ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart61g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor 40 0.002
2UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor 39 0.006
3UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein... 37 0.028

>UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor|
          Length = 287

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
 Frame = +1

Query: 154 SGVDAIGTYCAK---NGTSAET-QASIDQVLAALVPXXXXXXXXXXXXXXXXXXVWGLAQ 321
           S  D + T+C K   N TS  T   +++ +L+ L                    V G+  
Sbjct: 24  SDPDDMETFCMKSSRNTTSNTTYNKNLNTLLSTLSNQSSFANYYNLTTGLASDTVHGMFL 83

Query: 322 CRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLR 444
           C GDV R  C+ C+  A  E+A +C    +  ++   C++R
Sbjct: 84  CTGDVNRTTCNACVKNATIEIAKNCTNHREAIIYNVDCMVR 124



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>UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor|
          Length = 286

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 304 VWGLAQCRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLR 444
           V G+  C GDV R  C+ C+  A  E+A +C    +  ++Y  C++R
Sbjct: 79  VHGMFLCIGDVNRTTCNACVKNATIEIAKNCTNHREAIIYYFSCMVR 125



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>UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein 3 precursor|
          Length = 287

 Score = 36.6 bits (83), Expect = 0.028
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
 Frame = +1

Query: 154 SGVDAIGTYC---AKNGTSAET-QASIDQVLAALVPXXXXXXXXXXXXXXXXXXVWGLAQ 321
           S  D + T+C   ++N T   T   +++ +L+                      V+G+  
Sbjct: 28  SETDHMDTFCIDSSRNTTGNTTYNKNLNTMLSTFRNQSSIVNNYNLTTGLASDTVYGMFL 87

Query: 322 CRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLR 444
           C GDV    C+ C+  A  E+  +C    +  ++Y  C++R
Sbjct: 88  CTGDVNITTCNNCVKNATIEIVKNCTNHREAIIYYIDCMVR 128


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,733,178
Number of Sequences: 219361
Number of extensions: 292722
Number of successful extensions: 803
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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