ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart61g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192048.1| Oryza sativa (japonica cultivar-group), predic... 309 4e-81
2dbj|AK069379.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 4e-81
3dbj|AK060690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 4e-81
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 194 2e-46
5dbj|AP004363.3| Oryza sativa (japonica cultivar-group) genomic D... 194 2e-46
6dbj|AK119489.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
7ref|XM_475892.1| Oryza sativa (japonica cultivar-group), predic... 137 3e-29
8dbj|AK058980.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 3e-29
9gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome... 135 1e-28
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
11gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, comple... 46 0.096
12emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 46 0.096
13gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.5
14gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 1.5
15gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 1.5
16emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.5
17emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.5
18gb|AC099642.4| Mus musculus chromosome 15, clone RP24-346F18, co... 42 1.5
19gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.5
20gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 42 1.5
21dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
22gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.5
23emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.5
24gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 42 1.5
25gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 1.5
26gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
27emb|AL732377.4|CNS08C90 Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.5
28gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 5.9
29gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 5.9
30gb|AC136227.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
31gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
32gb|AC145325.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
33gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
34gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 5.9
35gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 5.9
36ref|XM_755172.1| Ustilago maydis 521 hypothetical protein (UM041... 40 5.9
37gb|AY372243.1| Psittacid herpesvirus 1 isolate 97-0001, complete... 40 5.9
38gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 5.9
39emb|X68650.1|OCRYARA O.cuniculus mRNA for ryanodine receptor 40 5.9
40emb|AL593853.11| Mouse DNA sequence from clone RP23-199A2 on chr... 40 5.9
41tpg|BK005078.1| TPA: TPA_inf: Oryza sativa (indica cultivar-grou... 40 5.9
42gb|AC104120.2| Homo sapiens chromosome 5 clone RP11-404L6, compl... 40 5.9
43gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 5.9
44gb|AC016564.6| Homo sapiens chromosome 5 clone CTC-538E9, comple... 40 5.9
45gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.9
46gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 5.9
47dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
48gb|AC136768.4| Homo sapiens chromosome 15, clone RP11-692H4, com... 40 5.9
49gb|AC104229.18| Homo sapiens chromosome 15, clone RP11-23A22, co... 40 5.9
50emb|AJ325712.1|HSA325712 Homo sapiens genomic sequence surroundi... 40 5.9
51ref|NM_208701.1| Eremothecium gossypii ACL056Cp (ACL056C), mRNA 40 5.9
52emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 5.9
53gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9 
>ref|NM_192048.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1119

 Score =  309 bits (156), Expect = 4e-81
 Identities = 234/260 (90%)
 Strand = Plus / Plus

                                                                       
Query: 180 gacggcgcagaccggcagctgcgacgacgcgctgccgcccgagctcgtcggcaactactc 239
           ||||||||||||   ||||||||||||||||||||| || | ||||| ||||||||||||
Sbjct: 72  gacggcgcagacatccagctgcgacgacgcgctgcccccggcgctcgccggcaactactc 131

                                                                       
Query: 240 cgggctggcctgcagccccgtctggaataacttcgtgctccggtacgcgcagggcgggga 299
           ||||||||||||| |||| |||||||| |||||||| |||||||||||||||||   |||
Sbjct: 132 cgggctggcctgccgcccggtctggaacaacttcgtcctccggtacgcgcaggggaagga 191

                                                                       
Query: 300 caacgtgctgcgggtggtgctctcggcgatgtacagctccgggtgggtggggatggcctt 359
           ||||||||||||||||||| ||||| ||||||||||| | ||||||||||||||||  ||
Sbjct: 192 caacgtgctgcgggtggtgatctcgtcgatgtacagcacggggtgggtggggatggggtt 251

                                                                       
Query: 360 ctccaaggacggcctcatggtgggctcgagcgccatggttgggtgggtcggcaagacggg 419
           ||||||||||||  | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 252 ctccaaggacgggatgatggtgggatcgagcgccatggttgggtgggtcggcaagacggg 311

                               
Query: 420 gcagccccacgtcaagcagt 439
           || | |||||||||||||||
Sbjct: 312 gctgtcccacgtcaagcagt 331
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>dbj|AK069379.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023015H09, full
           insert sequence
          Length = 1419

 Score =  309 bits (156), Expect = 4e-81
 Identities = 234/260 (90%)
 Strand = Plus / Plus

                                                                       
Query: 180 gacggcgcagaccggcagctgcgacgacgcgctgccgcccgagctcgtcggcaactactc 239
           ||||||||||||   ||||||||||||||||||||| || | ||||| ||||||||||||
Sbjct: 171 gacggcgcagacatccagctgcgacgacgcgctgcccccggcgctcgccggcaactactc 230

                                                                       
Query: 240 cgggctggcctgcagccccgtctggaataacttcgtgctccggtacgcgcagggcgggga 299
           ||||||||||||| |||| |||||||| |||||||| |||||||||||||||||   |||
Sbjct: 231 cgggctggcctgccgcccggtctggaacaacttcgtcctccggtacgcgcaggggaagga 290

                                                                       
Query: 300 caacgtgctgcgggtggtgctctcggcgatgtacagctccgggtgggtggggatggcctt 359
           ||||||||||||||||||| ||||| ||||||||||| | ||||||||||||||||  ||
Sbjct: 291 caacgtgctgcgggtggtgatctcgtcgatgtacagcacggggtgggtggggatggggtt 350

                                                                       
Query: 360 ctccaaggacggcctcatggtgggctcgagcgccatggttgggtgggtcggcaagacggg 419
           ||||||||||||  | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 351 ctccaaggacgggatgatggtgggatcgagcgccatggttgggtgggtcggcaagacggg 410

                               
Query: 420 gcagccccacgtcaagcagt 439
           || | |||||||||||||||
Sbjct: 411 gctgtcccacgtcaagcagt 430
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>dbj|AK060690.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-C01, full
           insert sequence
          Length = 1594

 Score =  309 bits (156), Expect = 4e-81
 Identities = 234/260 (90%)
 Strand = Plus / Plus

                                                                       
Query: 180 gacggcgcagaccggcagctgcgacgacgcgctgccgcccgagctcgtcggcaactactc 239
           ||||||||||||   ||||||||||||||||||||| || | ||||| ||||||||||||
Sbjct: 281 gacggcgcagacatccagctgcgacgacgcgctgcccccggcgctcgccggcaactactc 340

                                                                       
Query: 240 cgggctggcctgcagccccgtctggaataacttcgtgctccggtacgcgcagggcgggga 299
           ||||||||||||| |||| |||||||| |||||||| |||||||||||||||||   |||
Sbjct: 341 cgggctggcctgccgcccggtctggaacaacttcgtcctccggtacgcgcaggggaagga 400

                                                                       
Query: 300 caacgtgctgcgggtggtgctctcggcgatgtacagctccgggtgggtggggatggcctt 359
           ||||||||||||||||||| ||||| ||||||||||| | ||||||||||||||||  ||
Sbjct: 401 caacgtgctgcgggtggtgatctcgtcgatgtacagcacggggtgggtggggatggggtt 460

                                                                       
Query: 360 ctccaaggacggcctcatggtgggctcgagcgccatggttgggtgggtcggcaagacggg 419
           ||||||||||||  | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 461 ctccaaggacgggatgatggtgggatcgagcgccatggttgggtgggtcggcaagacggg 520

                               
Query: 420 gcagccccacgtcaagcagt 439
           || | |||||||||||||||
Sbjct: 521 gctgtcccacgtcaagcagt 540
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  194 bits (98), Expect = 2e-46
 Identities = 143/158 (90%)
 Strand = Plus / Minus

                                                                            
Query: 282      gtacgcgcagggcggggacaacgtgctgcgggtggtgctctcggcgatgtacagctccgg 341
                ||||||||||||   |||||||||||||||||||||| ||||| ||||||||||| | ||
Sbjct: 28024464 gtacgcgcaggggaaggacaacgtgctgcgggtggtgatctcgtcgatgtacagcacggg 28024405

                                                                            
Query: 342      gtgggtggggatggccttctccaaggacggcctcatggtgggctcgagcgccatggttgg 401
                ||||||||||||||  ||||||||||||||  | |||||||| |||||||||||||||||
Sbjct: 28024404 gtgggtggggatggggttctccaaggacgggatgatggtgggatcgagcgccatggttgg 28024345

                                                      
Query: 402      gtgggtcggcaagacggggcagccccacgtcaagcagt 439
                |||||||||||||||||||| | |||||||||||||||
Sbjct: 28024344 gtgggtcggcaagacggggctgtcccacgtcaagcagt 28024307



 Score =  117 bits (59), Expect = 3e-23
 Identities = 92/103 (89%)
 Strand = Plus / Minus

                                                                            
Query: 180      gacggcgcagaccggcagctgcgacgacgcgctgccgcccgagctcgtcggcaactactc 239
                ||||||||||||   ||||||||||||||||||||| || | ||||| ||||||||||||
Sbjct: 28024665 gacggcgcagacatccagctgcgacgacgcgctgcccccggcgctcgccggcaactactc 28024606

                                                           
Query: 240      cgggctggcctgcagccccgtctggaataacttcgtgctccgg 282
                ||||||||||||| |||| |||||||| |||||||| ||||||
Sbjct: 28024605 cgggctggcctgccgcccggtctggaacaacttcgtcctccgg 28024563
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>dbj|AP004363.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0019E03
          Length = 152092

 Score =  194 bits (98), Expect = 2e-46
 Identities = 143/158 (90%)
 Strand = Plus / Minus

                                                                         
Query: 282   gtacgcgcagggcggggacaacgtgctgcgggtggtgctctcggcgatgtacagctccgg 341
             ||||||||||||   |||||||||||||||||||||| ||||| ||||||||||| | ||
Sbjct: 39663 gtacgcgcaggggaaggacaacgtgctgcgggtggtgatctcgtcgatgtacagcacggg 39604

                                                                         
Query: 342   gtgggtggggatggccttctccaaggacggcctcatggtgggctcgagcgccatggttgg 401
             ||||||||||||||  ||||||||||||||  | |||||||| |||||||||||||||||
Sbjct: 39603 gtgggtggggatggggttctccaaggacgggatgatggtgggatcgagcgccatggttgg 39544

                                                   
Query: 402   gtgggtcggcaagacggggcagccccacgtcaagcagt 439
             |||||||||||||||||||| | |||||||||||||||
Sbjct: 39543 gtgggtcggcaagacggggctgtcccacgtcaagcagt 39506



 Score =  117 bits (59), Expect = 3e-23
 Identities = 92/103 (89%)
 Strand = Plus / Minus

                                                                         
Query: 180   gacggcgcagaccggcagctgcgacgacgcgctgccgcccgagctcgtcggcaactactc 239
             ||||||||||||   ||||||||||||||||||||| || | ||||| ||||||||||||
Sbjct: 39864 gacggcgcagacatccagctgcgacgacgcgctgcccccggcgctcgccggcaactactc 39805

                                                        
Query: 240   cgggctggcctgcagccccgtctggaataacttcgtgctccgg 282
             ||||||||||||| |||| |||||||| |||||||| ||||||
Sbjct: 39804 cgggctggcctgccgcccggtctggaacaacttcgtcctccgg 39762
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>dbj|AK119489.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-C11, full
           insert sequence
          Length = 1309

 Score =  194 bits (98), Expect = 2e-46
 Identities = 143/158 (90%)
 Strand = Plus / Minus

                                                                       
Query: 282 gtacgcgcagggcggggacaacgtgctgcgggtggtgctctcggcgatgtacagctccgg 341
           ||||||||||||   |||||||||||||||||||||| ||||| ||||||||||| | ||
Sbjct: 483 gtacgcgcaggggaaggacaacgtgctgcgggtggtgatctcgtcgatgtacagcacggg 424

                                                                       
Query: 342 gtgggtggggatggccttctccaaggacggcctcatggtgggctcgagcgccatggttgg 401
           ||||||||||||||  ||||||||||||||  | |||||||| |||||||||||||||||
Sbjct: 423 gtgggtggggatggggttctccaaggacgggatgatggtgggatcgagcgccatggttgg 364

                                                 
Query: 402 gtgggtcggcaagacggggcagccccacgtcaagcagt 439
           |||||||||||||||||||| | |||||||||||||||
Sbjct: 363 gtgggtcggcaagacggggctgtcccacgtcaagcagt 326



 Score =  117 bits (59), Expect = 3e-23
 Identities = 92/103 (89%)
 Strand = Plus / Minus

                                                                       
Query: 180 gacggcgcagaccggcagctgcgacgacgcgctgccgcccgagctcgtcggcaactactc 239
           ||||||||||||   ||||||||||||||||||||| || | ||||| ||||||||||||
Sbjct: 684 gacggcgcagacatccagctgcgacgacgcgctgcccccggcgctcgccggcaactactc 625

                                                      
Query: 240 cgggctggcctgcagccccgtctggaataacttcgtgctccgg 282
           ||||||||||||| |||| |||||||| |||||||| ||||||
Sbjct: 624 cgggctggcctgccgcccggtctggaacaacttcgtcctccgg 582
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>ref|XM_475892.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1110

 Score =  137 bits (69), Expect = 3e-29
 Identities = 159/189 (84%)
 Strand = Plus / Plus

                                                                       
Query: 222 gctcgtcggcaactactccgggctggcctgcagccccgtctggaataacttcgtgctccg 281
           ||||||||||||||||||||| |||   |||   || |||||||| || |||||||||||
Sbjct: 99  gctcgtcggcaactactccggcctgaattgccagccggtctggaacaatttcgtgctccg 158

                                                                       
Query: 282 gtacgcgcagggcggggacaacgtgctgcgggtggtgctctcggcgatgtacagctccgg 341
           |||    || | |  | ||||||||||| |||||||||| ||| ||||||||||| | ||
Sbjct: 159 gtatcaccaagacaagaacaacgtgctgagggtggtgctgtcgacgatgtacagcacggg 218

                                                                       
Query: 342 gtgggtggggatggccttctccaaggacggcctcatggtgggctcgagcgccatggttgg 401
           ||||||||||||||  ||||||  ||||||||||||||||||||||||||||||||| ||
Sbjct: 219 gtgggtggggatggggttctcccgggacggcctcatggtgggctcgagcgccatggtcgg 278

                    
Query: 402 gtgggtcgg 410
           |||| ||||
Sbjct: 279 gtggatcgg 287
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>dbj|AK058980.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D11, full
           insert sequence
          Length = 1462

 Score =  137 bits (69), Expect = 3e-29
 Identities = 159/189 (84%)
 Strand = Plus / Plus

                                                                       
Query: 222 gctcgtcggcaactactccgggctggcctgcagccccgtctggaataacttcgtgctccg 281
           ||||||||||||||||||||| |||   |||   || |||||||| || |||||||||||
Sbjct: 238 gctcgtcggcaactactccggcctgaattgccagccggtctggaacaatttcgtgctccg 297

                                                                       
Query: 282 gtacgcgcagggcggggacaacgtgctgcgggtggtgctctcggcgatgtacagctccgg 341
           |||    || | |  | ||||||||||| |||||||||| ||| ||||||||||| | ||
Sbjct: 298 gtatcaccaagacaagaacaacgtgctgagggtggtgctgtcgacgatgtacagcacggg 357

                                                                       
Query: 342 gtgggtggggatggccttctccaaggacggcctcatggtgggctcgagcgccatggttgg 401
           ||||||||||||||  ||||||  ||||||||||||||||||||||||||||||||| ||
Sbjct: 358 gtgggtggggatggggttctcccgggacggcctcatggtgggctcgagcgccatggtcgg 417

                    
Query: 402 gtgggtcgg 410
           |||| ||||
Sbjct: 418 gtggatcgg 426
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>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03,
             complete sequence
          Length = 144601

 Score =  135 bits (68), Expect = 1e-28
 Identities = 101/112 (90%)
 Strand = Plus / Plus

                                                                         
Query: 299   acaacgtgctgcgggtggtgctctcggcgatgtacagctccgggtgggtggggatggcct 358
             ||||||||||| |||||||||| ||| ||||||||||| | ||||||||||||||||  |
Sbjct: 42882 acaacgtgctgagggtggtgctgtcgacgatgtacagcacggggtgggtggggatggggt 42941

                                                                 
Query: 359   tctccaaggacggcctcatggtgggctcgagcgccatggttgggtgggtcgg 410
             |||||  ||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 42942 tctcccgggacggcctcatggtgggctcgagcgccatggtcgggtggatcgg 42993



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 222   gctcgtcggcaactactccgg 242
             |||||||||||||||||||||
Sbjct: 42366 gctcgtcggcaactactccgg 42386
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  135 bits (68), Expect = 1e-28
 Identities = 101/112 (90%)
 Strand = Plus / Plus

                                                                            
Query: 299      acaacgtgctgcgggtggtgctctcggcgatgtacagctccgggtgggtggggatggcct 358
                ||||||||||| |||||||||| ||| ||||||||||| | ||||||||||||||||  |
Sbjct: 27446752 acaacgtgctgagggtggtgctgtcgacgatgtacagcacggggtgggtggggatggggt 27446811

                                                                    
Query: 359      tctccaaggacggcctcatggtgggctcgagcgccatggttgggtgggtcgg 410
                |||||  ||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 27446812 tctcccgggacggcctcatggtgggctcgagcgccatggtcgggtggatcgg 27446863



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 222      gctcgtcggcaactactccgg 242
                |||||||||||||||||||||
Sbjct: 27446236 gctcgtcggcaactactccgg 27446256



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 134      tcgtcgtcgcgctcgccgcc 153
                ||||||||||||||||||||
Sbjct: 14815175 tcgtcgtcgcgctcgccgcc 14815194
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>gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, complete plasmid sequence
          Length = 184457

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 123   cgccgcgatgctcgtcgtcgcgctcgc 149
             |||||||||||||| ||||||||||||
Sbjct: 96347 cgccgcgatgctcgccgtcgcgctcgc 96373
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 176     gggtgacggcgcagaccggcagc 198
               |||||||||||||||||||||||
Sbjct: 4252953 gggtgacggcgcagaccggcagc 4252931
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 200    gcgacgacgcgctgccgcccg 220
              |||||||||||||||||||||
Sbjct: 374369 gcgacgacgcgctgccgcccg 374349



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 125     ccgcgatgctcgtcgtcgcgctcgccgc 152
               ||||||||| | ||||||||||||||||
Sbjct: 1180640 ccgcgatgcgcctcgtcgcgctcgccgc 1180667
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 119     tcggcgccgcgatgctcgtcgtcgcgctcgccg 151
               |||||| ||||||||||| || |||||||||||
Sbjct: 3085331 tcggcggcgcgatgctcggcggcgcgctcgccg 3085363
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 200     gcgacgacgcgctgccgcccg 220
               |||||||||||||||||||||
Sbjct: 1105050 gcgacgacgcgctgccgcccg 1105030



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 125     ccgcgatgctcgtcgtcgcgctcgccgc 152
               ||||||||| | ||||||||||||||||
Sbjct: 2334980 ccgcgatgcgcctcgtcgcgctcgccgc 2334953
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 119     tcggcgccgcgatgctcgtcgtcgcgctcgccg 151
               |||||| ||||||||||| || |||||||||||
Sbjct: 1264153 tcggcggcgcgatgctcggcggcgcgctcgccg 1264185
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 200    gcgacgacgcgctgccgcccg 220
              |||||||||||||||||||||
Sbjct: 986013 gcgacgacgcgctgccgcccg 985993



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 125     ccgcgatgctcgtcgtcgcgctcgccgc 152
               ||||||||| | ||||||||||||||||
Sbjct: 2049629 ccgcgatgcgcctcgtcgcgctcgccgc 2049656
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>gb|AC099642.4| Mus musculus chromosome 15, clone RP24-346F18, complete sequence
          Length = 138009

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 344   gggtggggatggccttctccaagga 368
             ||||||||||| |||||||||||||
Sbjct: 91289 gggtggggatgcccttctccaagga 91265
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 405     ggtcggcaagacggggcagccccac 429
               |||||||||||||||| ||||||||
Sbjct: 1390317 ggtcggcaagacgggggagccccac 1390341
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 119     tcggcgccgcgatgctcgtcgtcgcgctcgccg 151
               |||||| ||||||||||| || |||||||||||
Sbjct: 1371256 tcggcggcgcgatgctcggcggcgcgctcgccg 1371224
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 107      gcgcgtccggcgtcggcgccgcgatgctcgtcgtcgc 143
                |||||||| || ||||||| ||||| |||||||||||
Sbjct: 20832840 gcgcgtccagcctcggcgcggcgatcctcgtcgtcgc 20832804
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 101    tggcgcgcgcgtccggcgtcggcgccgcg 129
              ||||||||||| |||||| ||||||||||
Sbjct: 338859 tggcgcgcgcggccggcgacggcgccgcg 338831
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>emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb0046O08 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 101075

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 107   gcgcgtccggcgtcggcgccgcgatgctcgtcgtcgc 143
             |||||||| || ||||||| ||||| |||||||||||
Sbjct: 34571 gcgcgtccagcctcggcgcggcgatcctcgtcgtcgc 34535
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 123    cgccgcgatgctcgtcgtcgcgctcgccg 151
              ||||| |||||||||| ||||||||||||
Sbjct: 200762 cgccgtgatgctcgtcttcgcgctcgccg 200734



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 115     ggcgtcggcgccgcgatgct 134
               ||||||||||||||||||||
Sbjct: 2676560 ggcgtcggcgccgcgatgct 2676579
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 131     tgctcgtcgtcgcgctcgccg 151
               |||||||||||||||||||||
Sbjct: 1577277 tgctcgtcgtcgcgctcgccg 1577257
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 107      gcgcgtccggcgtcggcgccgcgatgctcgtcgtcgc 143
                |||||||| || ||||||| ||||| |||||||||||
Sbjct: 20759054 gcgcgtccagcctcggcgcggcgatcctcgtcgtcgc 20759018
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>emb|AL732377.4|CNS08C90 Oryza sativa chromosome 12, . BAC OSJNBa0036E08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 149022

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 107    gcgcgtccggcgtcggcgccgcgatgctcgtcgtcgc 143
              |||||||| || ||||||| ||||| |||||||||||
Sbjct: 130681 gcgcgtccagcctcggcgcggcgatcctcgtcgtcgc 130645
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 287     cgcagggcggggacaacgtgctgc 310
               |||||||||||| |||||||||||
Sbjct: 3622197 cgcagggcggggtcaacgtgctgc 3622220
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 124    gccgcgatgctcgtcgtcgcgctc 147
              ||||||||||||| ||||||||||
Sbjct: 681397 gccgcgatgctcgccgtcgcgctc 681374
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>gb|AC136227.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0109A13, complete sequence
          Length = 134258

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   tcgtcgtcgcgctcgccgcc 153
             ||||||||||||||||||||
Sbjct: 41517 tcgtcgtcgcgctcgccgcc 41536
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>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006B22,
              complete sequence
          Length = 166052

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    tcgtcgtcgcgctcgccgcc 153
              ||||||||||||||||||||
Sbjct: 150589 tcgtcgtcgcgctcgccgcc 150608
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>gb|AC145325.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0034E03 map near 50283S, complete sequence
          Length = 134074

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   gacgcgctgccgcccgagct 224
             ||||||||||||||||||||
Sbjct: 36856 gacgcgctgccgcccgagct 36837
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>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0041C22, complete sequence
          Length = 161172

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   gacgcgctgccgcccgagct 224
             ||||||||||||||||||||
Sbjct: 13739 gacgcgctgccgcccgagct 13758
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 167     tcgcgccgggggtgacggcg 186
               ||||||||||||||||||||
Sbjct: 2230837 tcgcgccgggggtgacggcg 2230856
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 175    ggggtgacggcgcag-accggcagctgc 201
              ||||||||||||||| ||||||||||||
Sbjct: 576004 ggggtgacggcgcagcaccggcagctgc 575977
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>ref|XM_755172.1| Ustilago maydis 521 hypothetical protein (UM04118.1) partial mRNA
          Length = 1665

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 129 gatgctcgtcgtcgcgctcg 148
           ||||||||||||||||||||
Sbjct: 157 gatgctcgtcgtcgcgctcg 138
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>gb|AY372243.1| Psittacid herpesvirus 1 isolate 97-0001, complete genome
          Length = 163025

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 62    cgaggcctttcacggcgtcggtgg 85
             |||||||||||||||| |||||||
Sbjct: 85994 cgaggcctttcacggcctcggtgg 85971
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 115     ggcgtcggcgccgcgatgct 134
               ||||||||||||||||||||
Sbjct: 2051347 ggcgtcggcgccgcgatgct 2051328
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>emb|X68650.1|OCRYARA O.cuniculus mRNA for ryanodine receptor
          Length = 15541

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 386  cgagcgccatggttgggtgg 405
            ||||||||||||||||||||
Sbjct: 4617 cgagcgccatggttgggtgg 4636
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>emb|AL593853.11| Mouse DNA sequence from clone RP23-199A2 on chromosome 11 Contains the 5'
              end of a novel gene, the Sfrs1 gene for
              arginine/serine-rich splicing factor 1 (ASF/SF2), the Vezf1
              gene for vascular endothelial zinc finger 1, a novel gene
              (2210416O15Rik), the gene for the likely ortholog of H.
              sapiens CUE domain containing 1 CUEDC1 (C330016O16Rik), the
              Mrps23 gene for mitochondrial ribosomal protein S23 and two
              CpG islands, complete sequence
          Length = 223276

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      gcttggctttccagctagta 24
              ||||||||||||||||||||
Sbjct: 197334 gcttggctttccagctagta 197353
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>tpg|BK005078.1| TPA: TPA_inf: Oryza sativa (indica cultivar-group) WRKY
           transcription factor 75 (WRKY75) gene, complete cds
          Length = 4697

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 134 tcgtcgtcgcgctcgccgcc 153
           ||||||||||||||||||||
Sbjct: 547 tcgtcgtcgcgctcgccgcc 566
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>gb|AC104120.2| Homo sapiens chromosome 5 clone RP11-404L6, complete sequence
          Length = 123372

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    gcccgagctcgtcggcaact 235
              ||||||||||||||||||||
Sbjct: 119228 gcccgagctcgtcggcaact 119209
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>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III,
              complete sequence
          Length = 907057

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    gctgccgcccgagctcgtcg 229
              ||||||||||||||||||||
Sbjct: 266876 gctgccgcccgagctcgtcg 266895
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>gb|AC016564.6| Homo sapiens chromosome 5 clone CTC-538E9, complete sequence
          Length = 132573

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    gcccgagctcgtcggcaact 235
              ||||||||||||||||||||
Sbjct: 111727 gcccgagctcgtcggcaact 111746
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 107     gcgcgtccggcgtcggcgccgcga 130
               ||||| ||||||||||||||||||
Sbjct: 4316366 gcgcggccggcgtcggcgccgcga 4316389
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 204     cgacgcgctgccgcccgagctcgt 227
               ||||||||||||| ||||||||||
Sbjct: 2784700 cgacgcgctgccggccgagctcgt 2784723
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 205      gacgcgctgccgcccgagct 224
                ||||||||||||||||||||
Sbjct: 14790204 gacgcgctgccgcccgagct 14790223
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>gb|AC136768.4| Homo sapiens chromosome 15, clone RP11-692H4, complete sequence
          Length = 54864

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 347  tggggatggccttctccaag 366
            ||||||||||||||||||||
Sbjct: 8143 tggggatggccttctccaag 8162
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>gb|AC104229.18| Homo sapiens chromosome 15, clone RP11-23A22, complete sequence
          Length = 168235

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    tggggatggccttctccaag 366
              ||||||||||||||||||||
Sbjct: 144703 tggggatggccttctccaag 144722
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>emb|AJ325712.1|HSA325712 Homo sapiens genomic sequence surrounding NotI site, clone NB1-178S
          Length = 1109

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 332  acagctccgggtgggtgggg 351
            ||||||||||||||||||||
Sbjct: 1080 acagctccgggtgggtgggg 1061
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>ref|NM_208701.1| Eremothecium gossypii ACL056Cp (ACL056C), mRNA
          Length = 678

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 gctgccgcccgagctcgtcg 229
           ||||||||||||||||||||
Sbjct: 433 gctgccgcccgagctcgtcg 414
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    gcgcgcgcgtccggcgtcgg 122
              ||||||||||||||||||||
Sbjct: 295403 gcgcgcgcgtccggcgtcgg 295422
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 205      gacgcgctgccgcccgagct 224
                ||||||||||||||||||||
Sbjct: 14870641 gacgcgctgccgcccgagct 14870660


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,557,735
Number of Sequences: 3902068
Number of extensions: 2557735
Number of successful extensions: 52828
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 48171
Number of HSP's gapped (non-prelim): 4669
length of query: 439
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 417
effective length of database: 17,147,199,772
effective search space: 7150382304924
effective search space used: 7150382304924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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