ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart61f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188014.1| Oryza sativa (japonica cultivar-group), Ozsa843... 109 7e-21
2dbj|AK101084.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 7e-21
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
4dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
5dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
6gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome... 66 9e-08
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
8dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 62 1e-06
9emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete ... 56 9e-05
10ref|NM_190711.1| Oryza sativa (japonica cultivar-group), predic... 42 1.4
11ref|XM_588802.2| PREDICTED: Bos taurus similar to oligodendrocyt... 42 1.4
12emb|AL133325.20| Human DNA sequence from clone RP5-984P4 on chro... 42 1.4
13emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.4
14emb|BX640422.1| Bordetella pertussis strain Tohama I, complete g... 42 1.4
15emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete ... 42 1.4
16dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
17dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
18gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 1.4
19gb|L10720.1|BPETOXOP Bordetella pertussis toxin liberation operon 42 1.4
20ref|XM_483662.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.4
21ref|XM_469762.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.4
22ref|XM_469760.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.4
23ref|XM_463717.1| Oryza sativa (japonica cultivar-group), predic... 40 5.4
24ref|XM_418084.1| PREDICTED: Gallus gallus similar to microtubule... 40 5.4
25gb|BC068049.1| Homo sapiens cDNA clone IMAGE:6340956, partial cds 40 5.4
26gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.4
27gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genom... 40 5.4
28gb|AY459336.1| Oryza sativa (japonica cultivar-group) clone CL03... 40 5.4
29emb|AL137247.14| Human DNA sequence from clone RP11-298P3 on chr... 40 5.4
30emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52),... 40 5.4
31gb|BC022188.2| Homo sapiens hypothetical gene CG018, mRNA (cDNA ... 40 5.4
32emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete ... 40 5.4
33emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete ... 40 5.4
34emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete ... 40 5.4
35gb|AE011704.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.4
36gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genom... 40 5.4
37gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 5.4
38gb|AF113009.1|AF113009 Homo sapiens PRO0297 mRNA, complete cds 40 5.4
39gb|DQ026301.1| Zea mays pyrroline 5-carboxylate reductase (p5cr)... 40 5.4
40dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
41dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
42dbj|AP003259.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
43dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.4
44dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
45dbj|AP006265.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
46dbj|AK070184.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
47gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 5.4
48dbj|AK061252.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
49gb|AC166753.3| Cavia porcellus, clone Cavia porcellus-25199257D4... 40 5.4 
>ref|NM_188014.1| Oryza sativa (japonica cultivar-group), Ozsa8434 predicted mRNA
          Length = 930

 Score =  109 bits (55), Expect = 7e-21
 Identities = 102/117 (87%), Gaps = 3/117 (2%)
 Strand = Plus / Plus

                                                                       
Query: 269 gccgacgccgccacgccgcggttccacctccgctggttcacccccgtcacggaggtcgcg 328
           ||||||||||||   |||||||||| |||||||||||||||||||||| | |||||    
Sbjct: 205 gccgacgccgcc---ccgcggttccgcctccgctggttcacccccgtcgccgaggtgaat 261

                                                                    
Query: 329 ctctgcgggcacgcgacgctggccaccgcccacttcctcttcacgtccgtcctcgcg 385
           |||||||| ||||||||||||||  |||||||||||||||||||  |||||||||||
Sbjct: 262 ctctgcggccacgcgacgctggcatccgcccacttcctcttcaccaccgtcctcgcg 318



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 124/149 (83%)
 Strand = Plus / Plus

                                                                       
Query: 89  atccagtatgtcgtggtggatgccttcacggcccagccgttcaagggcaacccggccgcg 148
           |||||||| | ||||||||| || ||| ||||| ||||||||||||||||||| ||||| 
Sbjct: 16  atccagtacgccgtggtggacgcgttcgcggccgagccgttcaagggcaaccccgccgcc 75

                                                                       
Query: 149 gtatgcttcctggtggacgacgcggccgcccccgcgggggacggacggtggatgcagtcc 208
           |||||| ||||||  |  || |  |||||  | |||| |||||  |||||||||||||||
Sbjct: 76  gtatgcctcctggaaggggaggatgccgcggcggcggcggacgagcggtggatgcagtcc 135

                                        
Query: 209 gtcgccgtcgagttcaacctctcccagac 237
           ||||| | |||||||||||||||| ||||
Sbjct: 136 gtcgcagccgagttcaacctctccgagac 164
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>dbj|AK101084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024I08, full
           insert sequence
          Length = 1161

 Score =  109 bits (55), Expect = 7e-21
 Identities = 102/117 (87%), Gaps = 3/117 (2%)
 Strand = Plus / Plus

                                                                       
Query: 269 gccgacgccgccacgccgcggttccacctccgctggttcacccccgtcacggaggtcgcg 328
           ||||||||||||   |||||||||| |||||||||||||||||||||| | |||||    
Sbjct: 287 gccgacgccgcc---ccgcggttccgcctccgctggttcacccccgtcgccgaggtgaat 343

                                                                    
Query: 329 ctctgcgggcacgcgacgctggccaccgcccacttcctcttcacgtccgtcctcgcg 385
           |||||||| ||||||||||||||  |||||||||||||||||||  |||||||||||
Sbjct: 344 ctctgcggccacgcgacgctggcatccgcccacttcctcttcaccaccgtcctcgcg 400



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 124/149 (83%)
 Strand = Plus / Plus

                                                                       
Query: 89  atccagtatgtcgtggtggatgccttcacggcccagccgttcaagggcaacccggccgcg 148
           |||||||| | ||||||||| || ||| ||||| ||||||||||||||||||| ||||| 
Sbjct: 98  atccagtacgccgtggtggacgcgttcgcggccgagccgttcaagggcaaccccgccgcc 157

                                                                       
Query: 149 gtatgcttcctggtggacgacgcggccgcccccgcgggggacggacggtggatgcagtcc 208
           |||||| ||||||  |  || |  |||||  | |||| |||||  |||||||||||||||
Sbjct: 158 gtatgcctcctggaaggggaggatgccgcggcggcggcggacgagcggtggatgcagtcc 217

                                        
Query: 209 gtcgccgtcgagttcaacctctcccagac 237
           ||||| | |||||||||||||||| ||||
Sbjct: 218 gtcgcagccgagttcaacctctccgagac 246
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 112/135 (82%)
 Strand = Plus / Minus

                                                                           
Query: 103     ggtggatgccttcacggcccagccgttcaagggcaacccggccgcggtatgcttcctggt 162
               |||||| || ||| ||||| ||||||||||||||||||| ||||| |||||| |||||| 
Sbjct: 9116217 ggtggacgcgttcgcggccgagccgttcaagggcaaccccgccgccgtatgcctcctgga 9116158

                                                                           
Query: 163     ggacgacgcggccgcccccgcgggggacggacggtggatgcagtccgtcgccgtcgagtt 222
                |  || |  |||||  | |||| |||||  |||||||||||||||||||| | ||||||
Sbjct: 9116157 aggggaggatgccgcggcggcggcggacgagcggtggatgcagtccgtcgcagccgagtt 9116098

                              
Query: 223     caacctctcccagac 237
               |||||||||| ||||
Sbjct: 9116097 caacctctccgagac 9116083



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                        
Query: 329     ctctgcgggcacgcgacgctggccaccgcccacttcctcttcacgtccgtcctcgcg 385
               |||||||| ||||||||||||||  |||||||||||||||||||  |||||||||||
Sbjct: 9115898 ctctgcggccacgcgacgctggcatccgcccacttcctcttcaccaccgtcctcgcg 9115842



 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 53/59 (89%), Gaps = 3/59 (5%)
 Strand = Plus / Minus

                                                                          
Query: 269     gccgacgccgccacgccgcggttccacctccgctggttcacccccgtcacggaggtcgc 327
               ||||||||||||   |||||||||| |||||||||||||||||||||| | ||||||||
Sbjct: 9116042 gccgacgccgcc---ccgcggttccgcctccgctggttcacccccgtcgccgaggtcgc 9115987



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 264      gcgcggccgacgccgccacgccgcg 288
                |||||| ||||||||||||||||||
Sbjct: 37295056 gcgcgggcgacgccgccacgccgcg 37295080



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 270      ccgacgccgccacgccgcgg 289
                ||||||||||||||||||||
Sbjct: 41713293 ccgacgccgccacgccgcgg 41713312
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>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0499C11
          Length = 151369

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 112/135 (82%)
 Strand = Plus / Minus

                                                                          
Query: 103    ggtggatgccttcacggcccagccgttcaagggcaacccggccgcggtatgcttcctggt 162
              |||||| || ||| ||||| ||||||||||||||||||| ||||| |||||| |||||| 
Sbjct: 145224 ggtggacgcgttcgcggccgagccgttcaagggcaaccccgccgccgtatgcctcctgga 145165

                                                                          
Query: 163    ggacgacgcggccgcccccgcgggggacggacggtggatgcagtccgtcgccgtcgagtt 222
               |  || |  |||||  | |||| |||||  |||||||||||||||||||| | ||||||
Sbjct: 145164 aggggaggatgccgcggcggcggcggacgagcggtggatgcagtccgtcgcagccgagtt 145105

                             
Query: 223    caacctctcccagac 237
              |||||||||| ||||
Sbjct: 145104 caacctctccgagac 145090



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                       
Query: 329    ctctgcgggcacgcgacgctggccaccgcccacttcctcttcacgtccgtcctcgcg 385
              |||||||| ||||||||||||||  |||||||||||||||||||  |||||||||||
Sbjct: 144905 ctctgcggccacgcgacgctggcatccgcccacttcctcttcaccaccgtcctcgcg 144849



 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 53/59 (89%), Gaps = 3/59 (5%)
 Strand = Plus / Minus

                                                                         
Query: 269    gccgacgccgccacgccgcggttccacctccgctggttcacccccgtcacggaggtcgc 327
              ||||||||||||   |||||||||| |||||||||||||||||||||| | ||||||||
Sbjct: 145049 gccgacgccgcc---ccgcggttccgcctccgctggttcacccccgtcgccgaggtcgc 144994
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>dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0011D01
          Length = 168655

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 112/135 (82%)
 Strand = Plus / Minus

                                                                         
Query: 103   ggtggatgccttcacggcccagccgttcaagggcaacccggccgcggtatgcttcctggt 162
             |||||| || ||| ||||| ||||||||||||||||||| ||||| |||||| |||||| 
Sbjct: 16599 ggtggacgcgttcgcggccgagccgttcaagggcaaccccgccgccgtatgcctcctgga 16540

                                                                         
Query: 163   ggacgacgcggccgcccccgcgggggacggacggtggatgcagtccgtcgccgtcgagtt 222
              |  || |  |||||  | |||| |||||  |||||||||||||||||||| | ||||||
Sbjct: 16539 aggggaggatgccgcggcggcggcggacgagcggtggatgcagtccgtcgcagccgagtt 16480

                            
Query: 223   caacctctcccagac 237
             |||||||||| ||||
Sbjct: 16479 caacctctccgagac 16465



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                      
Query: 329   ctctgcgggcacgcgacgctggccaccgcccacttcctcttcacgtccgtcctcgcg 385
             |||||||| ||||||||||||||  |||||||||||||||||||  |||||||||||
Sbjct: 16280 ctctgcggccacgcgacgctggcatccgcccacttcctcttcaccaccgtcctcgcg 16224



 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 53/59 (89%), Gaps = 3/59 (5%)
 Strand = Plus / Minus

                                                                        
Query: 269   gccgacgccgccacgccgcggttccacctccgctggttcacccccgtcacggaggtcgc 327
             ||||||||||||   |||||||||| |||||||||||||||||||||| | ||||||||
Sbjct: 16424 gccgacgccgcc---ccgcggttccgcctccgctggttcacccccgtcgccgaggtcgc 16369
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>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0099O15, complete sequence
          Length = 137357

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                  
Query: 329   ctctgcgggcacgcgacgctggccaccgcccacttcctcttcacgtccgtcct 381
             |||||||| ||||||||||||||  |||||||||||||||||||  |||||||
Sbjct: 43904 ctctgcggccacgcgacgctggcatccgcccacttcctcttcaccaccgtcct 43956



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   cctccgctggttcacccccg 314
             ||||||||||||||||||||
Sbjct: 43791 cctccgctggttcacccccg 43810
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                     
Query: 329      ctctgcgggcacgcgacgctggccaccgcccacttcctcttcacgtccgtcct 381
                |||||||| ||||||||||||||  |||||||||||||||||||  |||||||
Sbjct: 23653899 ctctgcggccacgcgacgctggcatccgcccacttcctcttcaccaccgtcct 23653951



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 295      cctccgctggttcacccccg 314
                ||||||||||||||||||||
Sbjct: 23653786 cctccgctggttcacccccg 23653805
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                          
Query: 299     cgctggttcacccccgtcacggaggtcgcgctctgcgggcacgcgacgctggccaccgc 357
               ||||||||||| |||| ||| ||||||||| | ||||| |||||||| |||||||||||
Sbjct: 8354997 cgctggttcacgcccgccaccgaggtcgcgatgtgcggtcacgcgaccctggccaccgc 8354939
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>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                          
Query: 299    cgctggttcacccccgtcacggaggtcgcgctctgcgggcacgcgacgctggccaccgcc 358
              ||||||||||| || | ||| ||||||||| | ||||| ||||| ||||| |||||||||
Sbjct: 245733 cgctggttcactccggccaccgaggtcgcgatgtgcggccacgccacgctcgccaccgcc 245792

                      
Query: 359    cacttcct 366
              ||| ||||
Sbjct: 245793 cacgtcct 245800
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>ref|NM_190711.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 636

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 264 gcgcggccgacgccgccacgccgcg 288
           |||||| ||||||||||||||||||
Sbjct: 334 gcgcgggcgacgccgccacgccgcg 310
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>ref|XM_588802.2| PREDICTED: Bos taurus similar to oligodendrocyte lineage
           transcription factor 2 (LOC539695), mRNA
          Length = 1077

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 154 cttcctggtggacgacgcggccgcc 178
           |||| ||||||||||||||||||||
Sbjct: 297 cttcttggtggacgacgcggccgcc 273
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>emb|AL133325.20| Human DNA sequence from clone RP5-984P4 on chromosome 20 Contains the
              NKX2-2 gene for NK2 transcription factor related locus 2
              (Drosophila), a hydroxysteroid (17-beta) dehydrogenase 12
              (HSD17B12) pseudogene, the GSTM3P gene for glutathione
              S-transferase M3 pseudogene, a novel gene and two CpG
              islands, complete sequence
          Length = 160013

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 261    cccgcgcggccgacgccgcca 281
              |||||||||||||||||||||
Sbjct: 101607 cccgcgcggccgacgccgcca 101627
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>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 337    gcacgcgacgctggccaccgc 357
              |||||||||||||||||||||
Sbjct: 332059 gcacgcgacgctggccaccgc 332079
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>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12
          Length = 257701

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 337    gcacgcgacgctggccaccgc 357
              |||||||||||||||||||||
Sbjct: 165237 gcacgcgacgctggccaccgc 165257
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>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 340    cgcgacgctggccaccgcccacttc 364
              |||| ||||||||||||||||||||
Sbjct: 291166 cgcgtcgctggccaccgcccacttc 291142
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>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0423B08
          Length = 151490

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 264  gcgcggccgacgccgccacgccgcg 288
            |||||| ||||||||||||||||||
Sbjct: 7090 gcgcgggcgacgccgccacgccgcg 7114
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>dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0679C12
          Length = 153666

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 264    gcgcggccgacgccgccacgccgcg 288
              |||||| ||||||||||||||||||
Sbjct: 132045 gcgcgggcgacgccgccacgccgcg 132069
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                                
Query: 320     gaggtcgcgctctgcgggcacgcgacgctggccaccgcccacttcctct 368
               ||||| || |||||||| ||||||||||| |||| ||| ||| ||||||
Sbjct: 2962041 gaggtggccctctgcggacacgcgacgctcgccagcgcacacgtcctct 2962089
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>gb|L10720.1|BPETOXOP Bordetella pertussis toxin liberation operon
          Length = 9342

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 337  gcacgcgacgctggccaccgc 357
            |||||||||||||||||||||
Sbjct: 2291 gcacgcgacgctggccaccgc 2311
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>ref|XM_483662.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1173

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 269 gccgacgccgccacgccgcg 288
           ||||||||||||||||||||
Sbjct: 361 gccgacgccgccacgccgcg 380
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>ref|XM_469762.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1051

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 334 cgggcacgcgacgctggccaccgc 357
           |||||||||||||| |||||||||
Sbjct: 323 cgggcacgcgacgcaggccaccgc 300
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>ref|XM_469760.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 575

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 334 cgggcacgcgacgctggccaccgc 357
           |||||||||||||| |||||||||
Sbjct: 300 cgggcacgcgacgcaggccaccgc 277
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>ref|XM_463717.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 855

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 270 ccgacgccgccacgccgcgg 289
           ||||||||||||||||||||
Sbjct: 121 ccgacgccgccacgccgcgg 102
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>ref|XM_418084.1| PREDICTED: Gallus gallus similar to microtubule-associated protein
            tau; Tau microtubule-associated protein (LOC419962), mRNA
          Length = 2282

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 46   tttggagctgctctgctctt 65
            ||||||||||||||||||||
Sbjct: 2242 tttggagctgctctgctctt 2223
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>gb|BC068049.1| Homo sapiens cDNA clone IMAGE:6340956, partial cds
          Length = 1576

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 cggccgcccccgcgggggac 190
           ||||||||||||||||||||
Sbjct: 171 cggccgcccccgcgggggac 190
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 334      cgggcacgcgacgctggccaccgc 357
                |||||||||||||| |||||||||
Sbjct: 30607931 cgggcacgcgacgcaggccaccgc 30607908
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>gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genomic sequence, complete
              sequence
          Length = 157970

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 334    cgggcacgcgacgctggccaccgc 357
              |||||||||||||| |||||||||
Sbjct: 154461 cgggcacgcgacgcaggccaccgc 154484
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>gb|AY459336.1| Oryza sativa (japonica cultivar-group) clone CL034244.2 R2R3-MYB gene
             region
          Length = 65993

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   gccgacgccgccacgccgcg 288
             ||||||||||||||||||||
Sbjct: 28393 gccgacgccgccacgccgcg 28412
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>emb|AL137247.14| Human DNA sequence from clone RP11-298P3 on chromosome 13 Contains the
             3' end of the BRCA2 gene for early onset breast cancer 2,
             the 3' end of a novel gene, part of an ATPase pseudogene
             and a CpG island, complete sequence
          Length = 79506

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   cggccgcccccgcgggggac 190
             ||||||||||||||||||||
Sbjct: 29635 cggccgcccccgcgggggac 29616
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>emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52), complete genome
          Length = 154746

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   cccgcgcggccgacgccgcc 280
             ||||||||||||||||||||
Sbjct: 38207 cccgcgcggccgacgccgcc 38188
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>gb|BC022188.2| Homo sapiens hypothetical gene CG018, mRNA (cDNA clone
           IMAGE:4813744), complete cds
          Length = 1983

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 cggccgcccccgcgggggac 190
           ||||||||||||||||||||
Sbjct: 121 cggccgcccccgcgggggac 140
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>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29
          Length = 293050

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    cccgcgcggccgacgccgcc 280
              ||||||||||||||||||||
Sbjct: 167574 cccgcgcggccgacgccgcc 167555
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>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    ggccgacgccgccacgccgc 287
              ||||||||||||||||||||
Sbjct: 250678 ggccgacgccgccacgccgc 250659
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>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29
          Length = 314100

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 320   gaggtcgcgctctgcgggcacgcgacgctggc 351
             ||||| ||| ||||||||||||||||| ||||
Sbjct: 42446 gaggtggcgttctgcgggcacgcgacggtggc 42477
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>gb|AE011704.1| Xanthomonas axonopodis pv. citri str. 306,  section 82 of 469 of
           the complete genome
          Length = 11626

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 330 tctgcgggcacgcgacgctggcca 353
           ||||||| ||||||||||||||||
Sbjct: 305 tctgcggtcacgcgacgctggcca 328
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>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete
              sequence
          Length = 139872

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 334    cgggcacgcgacgctggccaccgc 357
              |||||||||||||| |||||||||
Sbjct: 139504 cgggcacgcgacgcaggccaccgc 139481
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 110    gccttcacggcccagccgttcaag 133
              |||||||||||||||||| |||||
Sbjct: 748842 gccttcacggcccagccggtcaag 748819
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>gb|AF113009.1|AF113009 Homo sapiens PRO0297 mRNA, complete cds
          Length = 1423

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 171  cggccgcccccgcgggggac 190
            ||||||||||||||||||||
Sbjct: 1421 cggccgcccccgcgggggac 1402
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>gb|DQ026301.1| Zea mays pyrroline 5-carboxylate reductase (p5cr) mRNA, complete
           cds
          Length = 1178

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 270 ccgacgccgccacgccgcgg 289
           ||||||||||||||||||||
Sbjct: 215 ccgacgccgccacgccgcgg 196
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 269      gccgacgccgccacgccgcg 288
                ||||||||||||||||||||
Sbjct: 27523376 gccgacgccgccacgccgcg 27523395
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 334      cgggcacgcgacgctggccaccgc 357
                |||||||||||||| |||||||||
Sbjct: 30699353 cgggcacgcgacgcaggccaccgc 30699330
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>dbj|AP003259.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0466H10
          Length = 176530

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 270    ccgacgccgccacgccgcgg 289
              ||||||||||||||||||||
Sbjct: 128895 ccgacgccgccacgccgcgg 128914
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 289     gttccacctccgctggttcacccc 312
               ||||||||| ||||||||||||||
Sbjct: 1947402 gttccacctgcgctggttcacccc 1947425
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>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1479_B11
          Length = 105702

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 269  gccgacgccgccacgccgcg 288
            ||||||||||||||||||||
Sbjct: 5666 gccgacgccgccacgccgcg 5685
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>dbj|AP006265.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1112_E06
          Length = 95069

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   gccgacgccgccacgccgcg 288
             ||||||||||||||||||||
Sbjct: 86625 gccgacgccgccacgccgcg 86644
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>dbj|AK070184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044E03, full
           insert sequence
          Length = 1210

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 270 ccgacgccgccacgccgcgg 289
           ||||||||||||||||||||
Sbjct: 291 ccgacgccgccacgccgcgg 272
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 217     cgagttcaacctctcccagacggc 240
               |||||||||||||||| |||||||
Sbjct: 2475367 cgagttcaacctctccgagacggc 2475390
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>dbj|AK061252.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-G03, full
           insert sequence
          Length = 1051

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 334 cgggcacgcgacgctggccaccgc 357
           |||||||||||||| |||||||||
Sbjct: 323 cgggcacgcgacgcaggccaccgc 300
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>gb|AC166753.3| Cavia porcellus, clone Cavia porcellus-25199257D4, complete sequence
          Length = 42228

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ctagcagtagcaggcacaga 41
             ||||||||||||||||||||
Sbjct: 22050 ctagcagtagcaggcacaga 22069


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,392,439
Number of Sequences: 3902068
Number of extensions: 2392439
Number of successful extensions: 53977
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53058
Number of HSP's gapped (non-prelim): 917
length of query: 404
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 382
effective length of database: 17,147,199,772
effective search space: 6550230312904
effective search space used: 6550230312904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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