ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart61f10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
2dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
3dbj|AK065856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 7e-12
4dbj|AK061726.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 7e-12
5gb|AY105723.1| Zea mays PCO102084 mRNA sequence 74 4e-10
6gb|AY112292.1| Zea mays CL379_2 mRNA sequence 54 4e-04
7emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2 44 0.37
8emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genom... 44 0.37
9emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 44 0.37
10emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 1.5
11gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nippo... 42 1.5
12tpg|BK000092.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-gr... 42 1.5
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
14dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
16dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.5
17dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
18emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 1.5
19emb|AJ704003.1| Uncultured bacterium partial nosZ gene for nitro... 42 1.5
20emb|AJ704001.1| Uncultured bacterium partial nosZ gene for nitro... 42 1.5
21emb|AJ703953.1| Uncultured bacterium partial nosZ gene for nitro... 42 1.5
22emb|AJ703901.1| Uncultured bacterium partial nosZ gene for nitro... 42 1.5
23emb|AJ704206.1| Uncultured bacterium partial nosZ gene for nitro... 42 1.5
24gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
25ref|XM_464687.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
26gb|BT017054.1| Zea mays clone EL01N0355H08.c mRNA sequence 40 5.8
27ref|NM_193414.1| Oryza sativa (japonica cultivar-group), predic... 40 5.8
28ref|XM_469600.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
29gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 5.8
30gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.8
31gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genom... 40 5.8
32gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 5.8
33emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 5.8
34gb|CP000088.1| Thermobifida fusca YX, complete genome 40 5.8
35emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.8
36emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.8
37emb|BX640435.1| Bordetella parapertussis strain 12822, complete ... 40 5.8
38emb|BX640421.1| Bordetella pertussis strain Tohama I, complete g... 40 5.8
39emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.8
40emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete ... 40 5.8
41dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.8
42gb|AC011758.6|AC011758 Drosophila melanogaster, chromosome X, re... 40 5.8
43dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
44dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
45dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
46dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
47dbj|AP003933.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
48dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
49dbj|AP006268.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
50gb|AC107787.14| Mus musculus chromosome 1, clone RP23-432F10, co... 40 5.8
51dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
52dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
53dbj|AK107637.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
54dbj|AK099607.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
55emb|CR762056.2| Xenopus tropicalis finished cDNA, clone TEgg143l19 40 5.8
56gb|AE003571.4| Drosophila melanogaster chromosome X, section 68 ... 40 5.8
57gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 5.8
58gb|AC174596.2| Mus musculus BAC clone RP24-411K2 from chromosome... 40 5.8
59gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 5.8
60gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
61emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.8
62emb|CT485730.1| Xenopus tropicalis finished cDNA, clone TGas042c21 40 5.8
63gb|AC002070.1|HSAC002070 Human BAC clone 7E17 from 12q, complete... 40 5.8
64dbj|D16507.1|RICOSH1 Oryza sativa (japonica cultivar-group) OSH1... 40 5.8 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 240      aacccgctggacgccatgggcgccttcttctcggcgcagatgaaccggcgcaagctggtc 299
                ||||| ||||| ||||||||||||||||||||| ||||| ||||||| || |||||||||
Sbjct: 20761043 aaccctctggaagccatgggcgccttcttctcgtcgcaggtgaaccgccggaagctggtc 20760984

                    
Query: 300      acca 303
                ||||
Sbjct: 20760983 acca 20760980



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                            
Query: 340      gcggcgacgagttccccggctgcgcccaccgccccgccgaccgcaagacgtggatgtccg 399
                ||||||| | |||||||||| |||  ||||| || |||||||| |||||||||||| | |
Sbjct: 20760943 gcggcgaggcgttccccggcagcgagcaccggccggccgaccggaagacgtggatggcgg 20760884

                                                
Query: 400      agctcggccccgaccgcctgcgcctgcaccag 431
                ||||||| || || || |||||| ||||||||
Sbjct: 20760883 agctcgggccggagcggctgcgcgtgcaccag 20760852
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>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0569E11
          Length = 157319

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                         
Query: 240   aacccgctggacgccatgggcgccttcttctcggcgcagatgaaccggcgcaagctggtc 299
             ||||| ||||| ||||||||||||||||||||| ||||| ||||||| || |||||||||
Sbjct: 36072 aaccctctggaagccatgggcgccttcttctcgtcgcaggtgaaccgccggaagctggtc 36013

                 
Query: 300   acca 303
             ||||
Sbjct: 36012 acca 36009



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                         
Query: 340   gcggcgacgagttccccggctgcgcccaccgccccgccgaccgcaagacgtggatgtccg 399
             ||||||| | |||||||||| |||  ||||| || |||||||| |||||||||||| | |
Sbjct: 35972 gcggcgaggcgttccccggcagcgagcaccggccggccgaccggaagacgtggatggcgg 35913

                                             
Query: 400   agctcggccccgaccgcctgcgcctgcaccag 431
             ||||||| || || || |||||| ||||||||
Sbjct: 35912 agctcgggccggagcggctgcgcgtgcaccag 35881
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>dbj|AK065856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D02, full
           insert sequence
          Length = 1213

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                       
Query: 240 aacccgctggacgccatgggcgccttcttctcggcgcagatgaaccggcgcaagctggtc 299
           ||||| ||||| ||||||||||||||||||||| ||||| ||||||| || |||||||||
Sbjct: 33  aaccctctggaagccatgggcgccttcttctcgtcgcaggtgaaccgccggaagctggtc 92

               
Query: 300 acca 303
           ||||
Sbjct: 93  acca 96



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 340 gcggcgacgagttccccggctgcgcccaccgccccgccgaccgcaagacgtggatgtccg 399
           ||||||| | |||||||||| |||  ||||| || |||||||| |||||||||||| | |
Sbjct: 133 gcggcgaggcgttccccggcagcgagcaccggccggccgaccggaagacgtggatggcgg 192

                                           
Query: 400 agctcggccccgaccgcctgcgcctgcaccag 431
           ||||||| || || || |||||| ||||||||
Sbjct: 193 agctcgggccggagcggctgcgcgtgcaccag 224
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>dbj|AK061726.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B04, full
           insert sequence
          Length = 1477

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                       
Query: 240 aacccgctggacgccatgggcgccttcttctcggcgcagatgaaccggcgcaagctggtc 299
           ||||| ||||| ||||||||||||||||||||| ||||| ||||||| || |||||||||
Sbjct: 263 aaccctctggaagccatgggcgccttcttctcgtcgcaggtgaaccgccggaagctggtc 322

               
Query: 300 acca 303
           ||||
Sbjct: 323 acca 326



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 340 gcggcgacgagttccccggctgcgcccaccgccccgccgaccgcaagacgtggatgtccg 399
           ||||||| | |||||||||| |||  ||||| || |||||||| |||||||||||| | |
Sbjct: 363 gcggcgaggcgttccccggcagcgagcaccggccggccgaccggaagacgtggatggcgg 422

                                           
Query: 400 agctcggccccgaccgcctgcgcctgcaccag 431
           ||||||| || || || |||||| ||||||||
Sbjct: 423 agctcgggccggagcggctgcgcgtgcaccag 454
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>gb|AY105723.1| Zea mays PCO102084 mRNA sequence
          Length = 1551

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                       
Query: 240 aacccgctggacgccatgggcgccttcttctcggcgcagatgaaccggcgcaagctggtc 299
           ||||||||||| |||||||||||||||||||||  |||| || ||||||| |||||||| 
Sbjct: 348 aacccgctggaagccatgggcgccttcttctcgaagcaggtggaccggcggaagctggtg 407

                
Query: 300 accac 304
           |||||
Sbjct: 408 accac 412
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>gb|AY112292.1| Zea mays CL379_2 mRNA sequence
          Length = 1061

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 252 gccatgggcgccttcttctcggcgcagatgaaccggcgcaagctggt 298
           |||||||||||||||||||||  |||| || ||||||| ||||||||
Sbjct: 277 gccatgggcgccttcttctcgaagcaggtggaccggcggaagctggt 323
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>emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2
          Length = 223670

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 139   cggcgacgacgacgtcgcgcgc 160
             ||||||||||||||||||||||
Sbjct: 41836 cggcgacgacgacgtcgcgcgc 41815
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>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16
          Length = 349635

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 325    agcgctgcacctcctgcggcga 346
              ||||||||||||||||||||||
Sbjct: 115922 agcgctgcacctcctgcggcga 115901
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 362    cgcccaccgccccgccgaccgc 383
              ||||||||||||||||||||||
Sbjct: 295094 cgcccaccgccccgccgaccgc 295073
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 140   ggcgacgacgacgtcgcgcgcgcgt 164
             ||||||||||||| |||||||||||
Sbjct: 83679 ggcgacgacgacgacgcgcgcgcgt 83655
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>gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0060A14, from chromosome 10, complete sequence
          Length = 151343

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 143   gacgacgacgtcgcgcgcgcg 163
             |||||||||||||||||||||
Sbjct: 70174 gacgacgacgtcgcgcgcgcg 70154
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>tpg|BK000092.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) cellulose
             synthase-like A2 gene, complete cds
          Length = 10800

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 143   gacgacgacgtcgcgcgcgcg 163
             |||||||||||||||||||||
Sbjct: 10587 gacgacgacgtcgcgcgcgcg 10607
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 140      ggcgacgacgacgtcgcgcgcgcgt 164
                ||||||||||||| |||||||||||
Sbjct: 24963094 ggcgacgacgacgacgcgcgcgcgt 24963070
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 143      gacgacgacgtcgcgcgcgcg 163
                |||||||||||||||||||||
Sbjct: 13377797 gacgacgacgtcgcgcgcgcg 13377777
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 138      acggcgacgacgacgtcgcgc 158
                |||||||||||||||||||||
Sbjct: 21395115 acggcgacgacgacgtcgcgc 21395095



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 45      tccacagctagctagctagc 64
               ||||||||||||||||||||
Sbjct: 6705104 tccacagctagctagctagc 6705085
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 138     acggcgacgacgacgtcgcgc 158
               |||||||||||||||||||||
Sbjct: 4928097 acggcgacgacgacgtcgcgc 4928077
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>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1712_E04
          Length = 110098

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 138   acggcgacgacgacgtcgcgc 158
             |||||||||||||||||||||
Sbjct: 55068 acggcgacgacgacgtcgcgc 55048
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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 140   ggcgacgacgacgtcgcgcgcgcgt 164
             ||||||||||||| |||||||||||
Sbjct: 91314 ggcgacgacgacgacgcgcgcgcgt 91290
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>emb|AJ704003.1| Uncultured bacterium partial nosZ gene for nitrous-oxide reductase,
           clone C-B1
          Length = 398

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 139 cggcgacgacgacgtcgcgcg 159
           |||||||||||||||||||||
Sbjct: 90  cggcgacgacgacgtcgcgcg 70
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>emb|AJ704001.1| Uncultured bacterium partial nosZ gene for nitrous-oxide reductase,
           clone C-A3
          Length = 339

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 139 cggcgacgacgacgtcgcgcg 159
           |||||||||||||||||||||
Sbjct: 31  cggcgacgacgacgtcgcgcg 11
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>emb|AJ703953.1| Uncultured bacterium partial nosZ gene for nitrous-oxide reductase,
           clone B-C1
          Length = 848

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 139 cggcgacgacgacgtcgcgcg 159
           |||||||||||||||||||||
Sbjct: 538 cggcgacgacgacgtcgcgcg 518
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>emb|AJ703901.1| Uncultured bacterium partial nosZ gene for nitrous-oxide reductase,
           clone A4-1
          Length = 1125

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 139 cggcgacgacgacgtcgcgcg 159
           |||||||||||||||||||||
Sbjct: 817 cggcgacgacgacgtcgcgcg 797
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>emb|AJ704206.1| Uncultured bacterium partial nosZ gene for nitrous-oxide reductase,
           clone nZL-47
          Length = 1125

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 139 cggcgacgacgacgtcgcgcg 159
           |||||||||||||||||||||
Sbjct: 817 cggcgacgacgacgtcgcgcg 797
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 143      gacgacgacgtcgcgcgcgcg 163
                |||||||||||||||||||||
Sbjct: 13385137 gacgacgacgtcgcgcgcgcg 13385117
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>ref|XM_464687.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1249

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   tccacagctagctagctagc 64
            ||||||||||||||||||||
Sbjct: 1092 tccacagctagctagctagc 1111
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>gb|BT017054.1| Zea mays clone EL01N0355H08.c mRNA sequence
          Length = 955

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 143 gacgacgacgtcgcgcgcgc 162
           ||||||||||||||||||||
Sbjct: 147 gacgacgacgtcgcgcgcgc 128
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>ref|NM_193414.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1326

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 142 cgacgacgacgtcgcgcgcg 161
           ||||||||||||||||||||
Sbjct: 475 cgacgacgacgtcgcgcgcg 456
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>ref|XM_469600.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2604

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 51   gctagctagctagccgagcc 70
            ||||||||||||||||||||
Sbjct: 2159 gctagctagctagccgagcc 2140
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 141     gcgacgacgacgtcgcgcgc 160
               ||||||||||||||||||||
Sbjct: 2601079 gcgacgacgacgtcgcgcgc 2601098
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 51       gctagctagctagccgagcc 70
                ||||||||||||||||||||
Sbjct: 29303082 gctagctagctagccgagcc 29303101
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>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete
             sequence
          Length = 139788

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    gctagctagctagccgagcc 70
             ||||||||||||||||||||
Sbjct: 52918 gctagctagctagccgagcc 52899
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 352     tccccggctgcgcccaccgc 371
               ||||||||||||||||||||
Sbjct: 3438116 tccccggctgcgcccaccgc 3438135
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 344     cgacgagttccccggctgcg 363
               ||||||||||||||||||||
Sbjct: 1782167 cgacgagttccccggctgcg 1782148
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 365     ccaccgccccgccgaccgca 384
               ||||||||||||||||||||
Sbjct: 3600485 ccaccgccccgccgaccgca 3600466
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>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   ccgaccgcctgcgcctgcac 428
             ||||||||||||||||||||
Sbjct: 32466 ccgaccgcctgcgcctgcac 32447
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>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16
          Length = 346287

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    gcgctgcacctcctgcggcg 345
              ||||||||||||||||||||
Sbjct: 342243 gcgctgcacctcctgcggcg 342224
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>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14
          Length = 346259

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 409    ccgaccgcctgcgcctgcac 428
              ||||||||||||||||||||
Sbjct: 297389 ccgaccgcctgcgcctgcac 297370



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    gcgctgcacctcctgcggcg 345
              ||||||||||||||||||||
Sbjct: 261083 gcgctgcacctcctgcggcg 261064
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>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12
          Length = 349726

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 409   ccgaccgcctgcgcctgcac 428
             ||||||||||||||||||||
Sbjct: 27355 ccgaccgcctgcgcctgcac 27374
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    gcgacgacgacgtcgcgcgc 160
              ||||||||||||||||||||
Sbjct: 781121 gcgacgacgacgtcgcgcgc 781140
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>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29
          Length = 298450

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   cggcgacgacgacgtcgcgc 158
             ||||||||||||||||||||
Sbjct: 87609 cggcgacgacgacgtcgcgc 87590
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 403     tcggccccgaccgcctgcgc 422
               ||||||||||||||||||||
Sbjct: 3881707 tcggccccgaccgcctgcgc 3881726
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>gb|AC011758.6|AC011758 Drosophila melanogaster, chromosome X, region 19C-19E, BAC clone
             BACR25I22, complete sequence
          Length = 164942

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   gtcttcctcccccaatagca 222
             ||||||||||||||||||||
Sbjct: 79099 gtcttcctcccccaatagca 79118
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 136      tcacggcgacgacgacgtcgcgcgcgcg 163
                ||||||||||| ||||| ||||||||||
Sbjct: 13133202 tcacggcgacggcgacggcgcgcgcgcg 13133229
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 49       cagctagctagctagccgag 68
                ||||||||||||||||||||
Sbjct: 28439502 cagctagctagctagccgag 28439483
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 51       gctagctagctagccgagcc 70
                ||||||||||||||||||||
Sbjct: 29394504 gctagctagctagccgagcc 29394523
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 142      cgacgacgacgtcgcgcgcg 161
                ||||||||||||||||||||
Sbjct: 20702833 cgacgacgacgtcgcgcgcg 20702852
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>dbj|AP003933.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0066C06
          Length = 162304

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   cgacgacgacgtcgcgcgcg 161
             ||||||||||||||||||||
Sbjct: 45791 cgacgacgacgtcgcgcgcg 45810
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>dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0024F24
          Length = 172642

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    cgacgacgacgtcgcgcgcg 161
              ||||||||||||||||||||
Sbjct: 164809 cgacgacgacgtcgcgcgcg 164828
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>dbj|AP006268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0037D09
          Length = 140470

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 49   cagctagctagctagccgag 68
            ||||||||||||||||||||
Sbjct: 5254 cagctagctagctagccgag 5235
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>gb|AC107787.14| Mus musculus chromosome 1, clone RP23-432F10, complete sequence
          Length = 212943

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    tctggccatgtcttcctccc 213
              ||||||||||||||||||||
Sbjct: 143337 tctggccatgtcttcctccc 143356
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>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1131G07
          Length = 133992

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    tccacagctagctagctagc 64
             ||||||||||||||||||||
Sbjct: 26157 tccacagctagctagctagc 26138
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>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0027A02
          Length = 140402

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     tccacagctagctagctagc 64
              ||||||||||||||||||||
Sbjct: 139479 tccacagctagctagctagc 139460
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>dbj|AK107637.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-E10, full
            insert sequence
          Length = 1378

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 51   gctagctagctagccgagcc 70
            ||||||||||||||||||||
Sbjct: 1023 gctagctagctagccgagcc 1004
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>dbj|AK099607.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013048G01, full
            insert sequence
          Length = 1343

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   tccacagctagctagctagc 64
            ||||||||||||||||||||
Sbjct: 1092 tccacagctagctagctagc 1111
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>emb|CR762056.2| Xenopus tropicalis finished cDNA, clone TEgg143l19
          Length = 1049

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 80  tgatatttttgcgccattaatcga 103
           |||| |||||||||||||||||||
Sbjct: 721 tgatttttttgcgccattaatcga 744
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>gb|AE003571.4| Drosophila melanogaster chromosome X, section 68 of 74 of the complete
              sequence
          Length = 302538

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 203    gtcttcctcccccaatagca 222
              ||||||||||||||||||||
Sbjct: 181291 gtcttcctcccccaatagca 181310
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 141     gcgacgacgacgtcgcgcgc 160
               ||||||||||||||||||||
Sbjct: 2230190 gcgacgacgacgtcgcgcgc 2230171
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>gb|AC174596.2| Mus musculus BAC clone RP24-411K2 from chromosome 1, complete
            sequence
          Length = 154216

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  tctggccatgtcttcctccc 213
            ||||||||||||||||||||
Sbjct: 6773 tctggccatgtcttcctccc 6754
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    cgcccaccgccccgccgacc 381
              ||||||||||||||||||||
Sbjct: 892598 cgcccaccgccccgccgacc 892579
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 136      tcacggcgacgacgacgtcgcgcgcgcg 163
                ||||||||||| ||||| ||||||||||
Sbjct: 13087476 tcacggcgacggcgacggcgcgcgcgcg 13087503
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>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 178827

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 136    tcacggcgacgacgacgtcgcgcgcgcg 163
              ||||||||||| ||||| ||||||||||
Sbjct: 122405 tcacggcgacggcgacggcgcgcgcgcg 122432
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>emb|CT485730.1| Xenopus tropicalis finished cDNA, clone TGas042c21
          Length = 1151

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 80  tgatatttttgcgccattaatcga 103
           |||| |||||||||||||||||||
Sbjct: 835 tgatttttttgcgccattaatcga 858
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>gb|AC002070.1|HSAC002070 Human BAC clone 7E17 from 12q, complete sequence
          Length = 165197

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     ctccaacaaaatcaaccatg 38
              ||||||||||||||||||||
Sbjct: 144368 ctccaacaaaatcaaccatg 144387
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>dbj|D16507.1|RICOSH1 Oryza sativa (japonica cultivar-group) OSH1 gene for homeobox protein
          Length = 2598

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 51   gctagctagctagccgagcc 70
            ||||||||||||||||||||
Sbjct: 2159 gctagctagctagccgagcc 2140


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,946,812
Number of Sequences: 3902068
Number of extensions: 2946812
Number of successful extensions: 73653
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71632
Number of HSP's gapped (non-prelim): 2021
length of query: 434
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 412
effective length of database: 17,147,199,772
effective search space: 7064646306064
effective search space used: 7064646306064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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