ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart61f08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065885.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A06, full insert sequence Length = 3391 Score = 155 bits (78), Expect = 1e-34 Identities = 192/230 (83%) Strand = Plus / Plus Query: 199 ccccggcgctcgacagcaggcggcgcccgcagaacgtgtccggcgacttcttcgtcgatc 258 ||||||| ||||||||| | || |||||||||||||| ||||||||||||||||||||| Sbjct: 2248 ccccggcactcgacagcggccgccgcccgcagaacgtccccggcgacttcttcgtcgatc 2307 Query: 259 accggtgcatcgactgtgccacctgcaggtggatggctccggaggtgttcaagagagtcg 318 |||| ||||||||||| |||||| | |||||||| ||||||||||||||||| || | Sbjct: 2308 accgatgcatcgactgccagacctgccgctggatggcgccggaggtgttcaagagggtgg 2367 Query: 319 acggccagtccgccgtggcggcgcaacccacctccgaggaaaccaggaccaaggcactgc 378 |||| | |||||||||| ||||| |||| |||||| || |||||||||||| |||| Sbjct: 2368 acggaaaagccgccgtggccgcgcatcccatctccgacgaccacaggaccaaggccctgc 2427 Query: 379 aggccttgctctcttgccctacatcctctatccacaccgacaagcctgca 428 |||| ||||||| || ||||| |||| || |||||||| || |||||| Sbjct: 2428 aggctctgctctcctgtcctactgcctccattcacaccgagaaacctgca 2477
>ref|XM_507554.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1124_D06.11-2 mRNA Length = 1218 Score = 149 bits (75), Expect = 9e-33 Identities = 180/215 (83%) Strand = Plus / Plus Query: 222 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 281 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 164 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 223 Query: 282 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 341 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 224 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 283 Query: 342 caacccacctccgaggaaaccaggaccaaggcactgcaggccttgctctcttgccctaca 401 || |||| |||||| ||| |||||||||||| |||||||| ||||||| || ||||| Sbjct: 284 cagcccatctccgacgaacacaggaccaaggccctgcaggctctgctctcctgtcctact 343 Query: 402 tcctctatccacaccgacaagcctgcacaggacat 436 ||||| || |||||||| || |||||| ||||||| Sbjct: 344 tcctccattcacaccgagaaacctgcaaaggacat 378
>ref|XM_468525.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1218 Score = 149 bits (75), Expect = 9e-33 Identities = 180/215 (83%) Strand = Plus / Plus Query: 222 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 281 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 164 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 223 Query: 282 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 341 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 224 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 283 Query: 342 caacccacctccgaggaaaccaggaccaaggcactgcaggccttgctctcttgccctaca 401 || |||| |||||| ||| |||||||||||| |||||||| ||||||| || ||||| Sbjct: 284 cagcccatctccgacgaacacaggaccaaggccctgcaggctctgctctcctgtcctact 343 Query: 402 tcctctatccacaccgacaagcctgcacaggacat 436 ||||| || |||||||| || |||||| ||||||| Sbjct: 344 tcctccattcacaccgagaaacctgcaaaggacat 378
>ref|XM_507553.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1124_D06.11-2 mRNA Length = 1334 Score = 149 bits (75), Expect = 9e-33 Identities = 180/215 (83%) Strand = Plus / Plus Query: 222 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 281 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 163 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 222 Query: 282 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 341 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 223 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 282 Query: 342 caacccacctccgaggaaaccaggaccaaggcactgcaggccttgctctcttgccctaca 401 || |||| |||||| ||| |||||||||||| |||||||| ||||||| || ||||| Sbjct: 283 cagcccatctccgacgaacacaggaccaaggccctgcaggctctgctctcctgtcctact 342 Query: 402 tcctctatccacaccgacaagcctgcacaggacat 436 ||||| || |||||||| || |||||| ||||||| Sbjct: 343 tcctccattcacaccgagaaacctgcaaaggacat 377
>ref|XM_507067.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1124_D06.11-2 mRNA Length = 1381 Score = 149 bits (75), Expect = 9e-33 Identities = 180/215 (83%) Strand = Plus / Plus Query: 222 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 281 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 210 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 269 Query: 282 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 341 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 270 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 329 Query: 342 caacccacctccgaggaaaccaggaccaaggcactgcaggccttgctctcttgccctaca 401 || |||| |||||| ||| |||||||||||| |||||||| ||||||| || ||||| Sbjct: 330 cagcccatctccgacgaacacaggaccaaggccctgcaggctctgctctcctgtcctact 389 Query: 402 tcctctatccacaccgacaagcctgcacaggacat 436 ||||| || |||||||| || |||||| ||||||| Sbjct: 390 tcctccattcacaccgagaaacctgcaaaggacat 424
>dbj|AK122029.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112F11, full insert sequence Length = 1381 Score = 149 bits (75), Expect = 9e-33 Identities = 180/215 (83%) Strand = Plus / Plus Query: 222 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 281 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 210 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 269 Query: 282 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 341 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 270 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 329 Query: 342 caacccacctccgaggaaaccaggaccaaggcactgcaggccttgctctcttgccctaca 401 || |||| |||||| ||| |||||||||||| |||||||| ||||||| || ||||| Sbjct: 330 cagcccatctccgacgaacacaggaccaaggccctgcaggctctgctctcctgtcctact 389 Query: 402 tcctctatccacaccgacaagcctgcacaggacat 436 ||||| || |||||||| || |||||| ||||||| Sbjct: 390 tcctccattcacaccgagaaacctgcaaaggacat 424
>dbj|AK104532.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C07, full insert sequence Length = 1218 Score = 149 bits (75), Expect = 9e-33 Identities = 180/215 (83%) Strand = Plus / Plus Query: 222 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 281 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 164 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 223 Query: 282 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 341 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 224 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 283 Query: 342 caacccacctccgaggaaaccaggaccaaggcactgcaggccttgctctcttgccctaca 401 || |||| |||||| ||| |||||||||||| |||||||| ||||||| || ||||| Sbjct: 284 cagcccatctccgacgaacacaggaccaaggccctgcaggctctgctctcctgtcctact 343 Query: 402 tcctctatccacaccgacaagcctgcacaggacat 436 ||||| || |||||||| || |||||| ||||||| Sbjct: 344 tcctccattcacaccgagaaacctgcaaaggacat 378
>dbj|AK104364.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C11, full insert sequence Length = 1218 Score = 149 bits (75), Expect = 9e-33 Identities = 180/215 (83%) Strand = Plus / Plus Query: 222 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 281 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 164 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 223 Query: 282 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 341 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 224 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 283 Query: 342 caacccacctccgaggaaaccaggaccaaggcactgcaggccttgctctcttgccctaca 401 || |||| |||||| ||| |||||||||||| |||||||| ||||||| || ||||| Sbjct: 284 cagcccatctccgacgaacacaggaccaaggccctgcaggctctgctctcctgtcctact 343 Query: 402 tcctctatccacaccgacaagcctgcacaggacat 436 ||||| || |||||||| || |||||| ||||||| Sbjct: 344 tcctccattcacaccgagaaacctgcaaaggacat 378
>dbj|AK064830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F10, full insert sequence Length = 1335 Score = 149 bits (75), Expect = 9e-33 Identities = 180/215 (83%) Strand = Plus / Plus Query: 222 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 281 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 163 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 222 Query: 282 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 341 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 223 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 282 Query: 342 caacccacctccgaggaaaccaggaccaaggcactgcaggccttgctctcttgccctaca 401 || |||| |||||| ||| |||||||||||| |||||||| ||||||| || ||||| Sbjct: 283 cagcccatctccgacgaacacaggaccaaggccctgcaggctctgctctcctgtcctact 342 Query: 402 tcctctatccacaccgacaagcctgcacaggacat 436 ||||| || |||||||| || |||||| ||||||| Sbjct: 343 tcctccattcacaccgagaaacctgcaaaggacat 377
>ref|XM_468526.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1144 Score = 99.6 bits (50), Expect = 7e-18 Identities = 113/134 (84%) Strand = Plus / Plus Query: 222 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 281 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 159 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 218 Query: 282 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 341 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 219 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 278 Query: 342 caacccacctccga 355 || |||| |||||| Sbjct: 279 cagcccatctccga 292
>dbj|AK065244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I14, full insert sequence Length = 1142 Score = 99.6 bits (50), Expect = 7e-18 Identities = 113/134 (84%) Strand = Plus / Plus Query: 222 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 281 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 157 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 216 Query: 282 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 341 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 217 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 276 Query: 342 caacccacctccga 355 || |||| |||||| Sbjct: 277 cagcccatctccga 290
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 199 ccccggcgctcgacagcaggcggcgcccgcagaacgtgtccggcgacttcttcgtcg 255 ||||||| ||||||||| | || |||||||||||||| |||||||||||||||||| Sbjct: 35685914 ccccggcactcgacagcggccgccgcccgcagaacgtccccggcgacttcttcgtcg 35685858 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 299 ggaggtgttcaagagagtcgacggccagtccgccgtggcggcgcaacccacctccgagga 358 ||||||||||||||| || ||||| | |||||||||| ||||| |||| |||||| || Sbjct: 35685641 ggaggtgttcaagagggtggacggaaaagccgccgtggccgcgcatcccatctccgacga 35685582 Query: 359 aaccaggaccaaggcactgcagg 381 |||||||||||| ||||||| Sbjct: 35685581 ccacaggaccaaggccctgcagg 35685559 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 299 ggaggtgttcaagagagtcgacggccagtccgccgtggcggcgcaacccacctccgagga 358 ||||||||||||||| || ||||| | ||||||| || ||||| |||| |||||| || Sbjct: 35681623 ggaggtgttcaagagggtggacggaaaagccgccgtcgccgcgcagcccatctccgacga 35681564 Query: 359 aaccaggaccaaggcactgcagg 381 | |||||||||||| ||||||| Sbjct: 35681563 acacaggaccaaggccctgcagg 35681541 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 222 cgcccgcagaacgtgtccggcgacttcttcgtcg 255 |||||||||||||| |||||||||||||||||| Sbjct: 35681862 cgcccgcagaacgtccccggcgacttcttcgtcg 35681829
>dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_D06 Length = 102239 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 199 ccccggcgctcgacagcaggcggcgcccgcagaacgtgtccggcgacttcttcgtcg 255 ||||||| ||||||||| | || |||||||||||||| |||||||||||||||||| Sbjct: 46528 ccccggcactcgacagcggccgccgcccgcagaacgtccccggcgacttcttcgtcg 46472 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 299 ggaggtgttcaagagagtcgacggccagtccgccgtggcggcgcaacccacctccgagga 358 ||||||||||||||| || ||||| | |||||||||| ||||| |||| |||||| || Sbjct: 46255 ggaggtgttcaagagggtggacggaaaagccgccgtggccgcgcatcccatctccgacga 46196 Query: 359 aaccaggaccaaggcactgcagg 381 |||||||||||| ||||||| Sbjct: 46195 ccacaggaccaaggccctgcagg 46173 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 299 ggaggtgttcaagagagtcgacggccagtccgccgtggcggcgcaacccacctccgagga 358 ||||||||||||||| || ||||| | ||||||| || ||||| |||| |||||| || Sbjct: 42237 ggaggtgttcaagagggtggacggaaaagccgccgtcgccgcgcagcccatctccgacga 42178 Query: 359 aaccaggaccaaggcactgcagg 381 | |||||||||||| ||||||| Sbjct: 42177 acacaggaccaaggccctgcagg 42155 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 222 cgcccgcagaacgtgtccggcgacttcttcgtcg 255 |||||||||||||| |||||||||||||||||| Sbjct: 42476 cgcccgcagaacgtccccggcgacttcttcgtcg 42443
>tpg|BK002382.1| TPA: TPA_inf: Drosophila melanogaster HDC12377 (HDC12377) gene, complete cds Length = 1760 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 14 agctcagctcagctcgcctcggctca 39 |||||||||||||||| ||||||||| Sbjct: 785 agctcagctcagctcggctcggctca 760
>gb|AC008313.3|AC008313 Drosophila melanogaster, chromosome 3R, region 84D-84E, BAC clone BACR11D12, complete sequence Length = 189596 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 14 agctcagctcagctcgcctcggctca 39 |||||||||||||||| ||||||||| Sbjct: 153041 agctcagctcagctcggctcggctca 153016
>gb|AE003676.4| Drosophila melanogaster chromosome 3R, section 14 of 118 of the complete sequence Length = 267607 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 14 agctcagctcagctcgcctcggctca 39 |||||||||||||||| ||||||||| Sbjct: 229580 agctcagctcagctcggctcggctca 229555
>ref|XM_418230.1| PREDICTED: Gallus gallus similar to hypothetical gene MGC19595 (LOC420112), mRNA Length = 2262 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 14 agctcagctcagctcgcctcggctc 38 |||||||||||||||| |||||||| Sbjct: 132 agctcagctcagctcggctcggctc 108
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 ccctcgccgccccgccggctc 138 ||||||||||||||||||||| Sbjct: 1333823 ccctcgccgccccgccggctc 1333803
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 ttcttcgtcgatcaccggtgc 266 ||||||||||||||||||||| Sbjct: 1961780 ttcttcgtcgatcaccggtgc 1961760
>emb|CR354313.1| Gallus gallus finished cDNA, clone ChEST70d4 Length = 2304 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 14 agctcagctcagctcgcctcggctc 38 |||||||||||||||| |||||||| Sbjct: 137 agctcagctcagctcggctcggctc 113
>gb|AC159374.2| Gallus gallus BAC clone CH261-5A10 from chromosome unknown, complete sequence Length = 245547 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 agctcacaagctcagctcagc 26 ||||||||||||||||||||| Sbjct: 56689 agctcacaagctcagctcagc 56709
>gb|AC145978.3| Gallus gallus BAC clone CH261-10K7 from chromosome unknown, complete sequence Length = 216402 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 agctcagctcagctcgcctcggctc 38 |||||||||||||||| |||||||| Sbjct: 36893 agctcagctcagctcggctcggctc 36917
>gb|AC145947.3| Gallus gallus BAC clone CH261-24O5 from chromosome unknown, complete sequence Length = 233033 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 14 agctcagctcagctcgcctcggctc 38 |||||||||||||||| |||||||| Sbjct: 149809 agctcagctcagctcggctcggctc 149785
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 gtggatggctccggaggtgt 306 |||||||||||||||||||| Sbjct: 573686 gtggatggctccggaggtgt 573705
>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0035J16, complete sequence Length = 170233 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 tcacaagctcagctcagctc 28 |||||||||||||||||||| Sbjct: 68074 tcacaagctcagctcagctc 68055
>gb|AC104847.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0480H08, complete sequence Length = 156301 Score = 40.1 bits (20), Expect = 5.9 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 123 gccgccccgccggctca-cctgcgtccgcgcc 153 |||||||||||| |||| |||||||||||||| Sbjct: 82235 gccgccccgccgtctcaacctgcgtccgcgcc 82204
>ref|XM_843002.1| Leishmania major strain Friedlin protein kinase (LMJ_0398) partial mRNA Length = 4557 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 gtggatggctccggaggtgt 306 |||||||||||||||||||| Sbjct: 2091 gtggatggctccggaggtgt 2110
>ref|XM_533115.2| PREDICTED: Canis familiaris similar to tweety 2 isoform 1 (LOC475908), mRNA Length = 1632 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 gtcccctcccccggcgctcg 210 |||||||||||||||||||| Sbjct: 50 gtcccctcccccggcgctcg 31
>gb|AC123041.2| Mus musculus BAC clone RP24-545E4 from 3, complete sequence Length = 191533 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 cactgcaggccttgctctct 392 |||||||||||||||||||| Sbjct: 99579 cactgcaggccttgctctct 99560
>gb|AC113595.11| Mus musculus chromosome 15, clone RP23-373B5, complete sequence Length = 235814 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 aaggcactgcaggccttgct 388 |||||||||||||||||||| Sbjct: 138920 aaggcactgcaggccttgct 138901
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 acttcttcgtcgatcaccgg 263 |||||||||||||||||||| Sbjct: 302231 acttcttcgtcgatcaccgg 302212
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 316 tcgacggccagtccgccgtggcggcgca 343 |||||| ||||||||||| ||||||||| Sbjct: 191887 tcgacgaccagtccgccggggcggcgca 191914
>emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093O08, complete sequence Length = 148860 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 ccaccacatccctcgccgcc 128 |||||||||||||||||||| Sbjct: 85058 ccaccacatccctcgccgcc 85039
>dbj|AB158483.1| Cyanidioschyzon merolae genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, complete sequence, clone:BAC clone H1D17 Length = 98410 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 264 tgcatcgactgtgccacctgcaggtggatggc 295 ||||||||||||| |||||| |||||||||| Sbjct: 51397 tgcatcgactgtgatacctgccggtggatggc 51428
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 ccaccacatccctcgccgcc 128 |||||||||||||||||||| Sbjct: 31388250 ccaccacatccctcgccgcc 31388231
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.9 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 123 gccgccccgccggctca-cctgcgtccgcgcc 153 |||||||||||| |||| |||||||||||||| Sbjct: 21324763 gccgccccgccgtctcaacctgcgtccgcgcc 21324732
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 tcacaagctcagctcagctc 28 |||||||||||||||||||| Sbjct: 19364725 tcacaagctcagctcagctc 19364706
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 gctcagctcagctcgcctcggctc 38 ||||||||||||||| |||||||| Sbjct: 34285383 gctcagctcagctcggctcggctc 34285406
>dbj|AP003073.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702B09 Length = 172541 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 gctcagctcagctcgcctcggctc 38 ||||||||||||||| |||||||| Sbjct: 121069 gctcagctcagctcggctcggctc 121092
>dbj|AK109196.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-B09, full insert sequence Length = 627 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ccaccacatccctcgccgcc 128 |||||||||||||||||||| Sbjct: 75 ccaccacatccctcgccgcc 94
>dbj|AK072257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008H18, full insert sequence Length = 1804 Score = 40.1 bits (20), Expect = 5.9 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 123 gccgccccgccggctca-cctgcgtccgcgcc 153 |||||||||||| |||| |||||||||||||| Sbjct: 120 gccgccccgccgtctcaacctgcgtccgcgcc 151
>dbj|AK067179.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097F03, full insert sequence Length = 1272 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 tcacaagctcagctcagctc 28 |||||||||||||||||||| Sbjct: 28 tcacaagctcagctcagctc 47
>gb|AY105688.1| Zea mays PCO142867 mRNA sequence Length = 1374 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 acctgcaggtggatggctccggag 302 |||| ||||||||||||||||||| Sbjct: 1097 acctacaggtggatggctccggag 1120
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cggccagtccgccgtggcgg 339 |||||||||||||||||||| Sbjct: 336668 cggccagtccgccgtggcgg 336687
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.9 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 123 gccgccccgccggctca-cctgcgtccgcgcc 153 |||||||||||| |||| |||||||||||||| Sbjct: 21634962 gccgccccgccgtctcaacctgcgtccgcgcc 21634931 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,173,380 Number of Sequences: 3902068 Number of extensions: 3173380 Number of successful extensions: 64427 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 64081 Number of HSP's gapped (non-prelim): 355 length of query: 436 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 414 effective length of database: 17,147,199,772 effective search space: 7098940705608 effective search space used: 7098940705608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
