Clone Information

BLAST Search Result

Clone Name	bart61f05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	BSH_ARATH (P93045) Chromatin structure remodeling complex protei...	167	9e-42
2	SNF5_BRARE (Q5U379) SWI/SNF-related, matrix-associated, actin-de...	69	6e-12
3	SNF5_MOUSE (Q9Z0H3) SWI/SNF-related, matrix-associated, actin-de...	67	2e-11
4	SNF5_HUMAN (Q12824) SWI/SNF-related, matrix-associated, actin-de...	67	2e-11
5	SNF5_BOVIN (Q5BIN2) SWI/SNF-related, matrix-associated, actin-de...	67	2e-11
6	SNF5_CHICK (Q5ZK40) SWI/SNF-related, matrix-associated, actin-de...	67	2e-11
7	SNF5_XENTR (Q6DFM1) SWI/SNF-related, matrix-associated, actin-de...	67	3e-11
8	SNF5_XENLA (Q6GQ82) SWI/SNF-related, matrix-associated, actin-de...	67	3e-11
9	SNF5_TETFL (O42467) SWI/SNF-related, matrix-associated, actin-de...	65	9e-11
10	SFH1_YARLI (Q6C9N2) Chromatin structure remodeling complex prote...	48	1e-05
11	YA28_SCHPO (Q09699) Hypothetical protein C2F7.08c in chromosome I	42	6e-04
12	SNF5_YEAST (P18480) Transcription regulatory protein SNF5 (SWI/S...	41	0.002
13	SFH1_KLULA (Q6CSR7) Chromatin structure remodeling complex prote...	40	0.002
14	SFH1_YEAST (Q06168) Chromatin structure remodeling complex prote...	39	0.007
15	SFH1_SCHPO (Q9USM3) Chromatin structure remodeling complex prote...	37	0.019
16	SFH1_ASHGO (Q754R8) Chromatin structure remodeling complex prote...	37	0.033
17	FOXE3_HUMAN (Q13461) Forkhead box protein E3 (Forkhead-related p...	34	0.21
18	CSRA_DESVH (Q72EP8) Carbon storage regulator homolog	33	0.36
19	DPY7_CAEEL (P34688) Cuticle collagen dpy-7 precursor (Protein du...	33	0.36
20	SFH1_CANGA (Q6FTV3) Chromatin structure remodeling complex prote...	32	0.62
21	ENT2_YEAST (Q05785) Epsin-2	32	0.81
22	RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis prote...	32	0.81
23	ORN_PSESM (Q87VI6) Oligoribonuclease (EC 3.1.-.-)	32	1.1
24	CONG_BOVIN (P23805) Conglutinin precursor	32	1.1
25	EFTS_ONYPE (P61337) Elongation factor Ts (EF-Ts)	31	1.8
26	DPO3B_STRCO (P27903) DNA polymerase III beta subunit (EC 2.7.7.7)	31	1.8
27	LTBP3_HUMAN (Q9NS15) Latent transforming growth factor beta-bind...	30	2.3
28	CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor	30	2.3
29	COL19_CAEEL (P18835) Cuticle collagen 19 precursor	30	2.3
30	AGO2_DROME (Q9VUQ5) Argonaute 2 protein	30	3.1
31	RIBD_CHLMU (Q9PLJ6) Riboflavin biosynthesis protein ribD [Includ...	30	3.1
32	LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-bind...	30	3.1
33	PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regula...	30	4.0
34	PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9	30	4.0
35	SYQ_RALSO (Q8Y199) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu...	30	4.0
36	PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regu...	30	4.0
37	BCSA5_ACEXY (Q9WX75) Putative cellulose synthase 3 [Includes: Ce...	30	4.0
38	BCSA4_ACEXY (Q9RBJ2) Putative cellulose synthase 2 [Includes: Ce...	30	4.0
39	PAR4_RAT (Q920E0) Proteinase-activated receptor 4 precursor (PAR...	29	5.2
40	CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor	29	5.2
41	CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)	29	5.2
42	ATG2_PICPA (Q9HFR4) Autophagy-related protein 2 (Glucose-induced...	29	5.2
43	MSHM_SARGL (O63852) Mitochondrial MutS protein homolog	29	5.2
44	HIS1_HALSA (Q9HN53) ATP phosphoribosyltransferase (EC 2.4.2.17) ...	29	5.2
45	CSRA3_PSESM (Q87Z65) Carbon storage regulator homolog 3	29	5.2
46	IER2_HUMAN (Q9BTL4) Immediate early response gene 2 protein (Pro...	29	5.2
47	DNAA_STRCH (Q9ZH75) Chromosomal replication initiator protein dnaA	29	6.8
48	COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Co...	29	6.8
49	CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor	29	6.8
50	RL2_HALMA (P20276) 50S ribosomal protein L2P (Hmal2) (Hl4)	29	6.8
51	CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long...	29	6.8
52	SYQ_PSEPK (Q88IU5) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu...	28	8.9
53	CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor	28	8.9
54	C1QT5_HUMAN (Q9BXJ0) Complement C1q tumor necrosis factor-relate...	28	8.9
55	YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6	28	8.9
56	SSB_XANAC (Q8PIJ2) Single-stranded DNA-binding protein (SSB) (He...	28	8.9
57	PAC2_PSES3 (P15558) Penicillin acylase 2 precursor (EC 3.5.1.11)...	28	8.9

>BSH_ARATH (P93045) Chromatin structure remodeling complex protein BSH|
           (Protein bushy) (SNF5 homolog)
          Length = 240

 Score =  167 bits (424), Expect = 9e-42
 Identities = 74/112 (66%), Positives = 95/112 (84%)
 Frame = +3

Query: 129 VKFRMPTRDNLVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLPATFVPQ 308
           VKFRMPT +NLVPIR+DI+ +GQRY+DAFTWNP DPD+EV+  AKRT K+LKLP  FV Q
Sbjct: 13  VKFRMPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTVKDLKLPYAFVTQ 72

Query: 309 MLHSIQGQLAEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQFLWDIGNLE 464
           +  SIQ QL++FR+YEGQ+M   EKI+P+K+DLRVN+T+++DQFLWD+ N E
Sbjct: 73  IAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLWDLNNFE 124



 Score = 32.7 bits (73), Expect = 0.47
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +3

Query: 141 MPTRDNLVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLPATFV-PQMLH 317
           M T + ++PI++D+ V+    +D F W+  + +S+    A+   K+L +    V P +  
Sbjct: 92  MYTGEKIIPIKLDLRVNHTLIKDQFLWDLNNFESDPEEFARTLCKDLGVEDPEVGPAVAF 151

Query: 318 SIQGQLAE 341
           +I+ QL E
Sbjct: 152 AIREQLYE 159

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>SNF5_BRARE (Q5U379) SWI/SNF-related, matrix-associated, actin-dependent|
           regulator of chromatin subfamily B member 1
          Length = 373

 Score = 68.9 bits (167), Expect = 6e-12
 Identities = 37/103 (35%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
 Frame = +3

Query: 159 LVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKL-PATFVPQMLHSIQGQL 335
           LVPIR+D+E+DGQ+ RDAFTWN  +        A+    +L L P TFVP +  +I+ Q+
Sbjct: 174 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLSPLTFVPAIASAIRQQI 233

Query: 336 AEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQFLWDIGNLE 464
             + +    + Q+ ++++ +K+++ V N  + DQF WD+   E
Sbjct: 234 ESYPTDSILDEQMDQRVI-IKLNIHVGNISLVDQFEWDMSEKE 275



 Score = 36.2 bits (82), Expect = 0.043
 Identities = 26/96 (27%), Positives = 45/96 (46%)
 Frame = +3

Query: 153 DNLVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLPATFVPQMLHSIQGQ 332
           D  V I+++I V      D F W+  + ++     A +   EL L   FV  + +SI+GQ
Sbjct: 247 DQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQ 306

Query: 333 LAEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQF 440
           L    S+  +     E  +P  +++ + NT   DQ+
Sbjct: 307 L----SWHQRTYAFSENPLP-TVEIAIRNTGDADQW 337

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>SNF5_MOUSE (Q9Z0H3) SWI/SNF-related, matrix-associated, actin-dependent|
           regulator of chromatin subfamily B member 1 (Integrase
           interactor 1 protein) (mSNF5)
          Length = 385

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
 Frame = +3

Query: 159 LVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKL-PATFVPQMLHSIQGQL 335
           LVPIR+D+E+DGQ+ RDAFTWN  +        ++    +L L P TFVP +  +I+ Q+
Sbjct: 186 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 245

Query: 336 AEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQFLWDIGNLE 464
             + +    E Q  ++++ +K+++ V N  + DQF WD+   E
Sbjct: 246 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKE 287



 Score = 36.2 bits (82), Expect = 0.043
 Identities = 26/96 (27%), Positives = 45/96 (46%)
 Frame = +3

Query: 153 DNLVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLPATFVPQMLHSIQGQ 332
           D  V I+++I V      D F W+  + ++     A +   EL L   FV  + +SI+GQ
Sbjct: 259 DQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQ 318

Query: 333 LAEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQF 440
           L    S+  +     E  +P  +++ + NT   DQ+
Sbjct: 319 L----SWHQKTYAFSENPLP-TVEIAIRNTGDADQW 349

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>SNF5_HUMAN (Q12824) SWI/SNF-related, matrix-associated, actin-dependent|
           regulator of chromatin subfamily B member 1 (Integrase
           interactor 1 protein) (hSNF5) (BAF47)
          Length = 385

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
 Frame = +3

Query: 159 LVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKL-PATFVPQMLHSIQGQL 335
           LVPIR+D+E+DGQ+ RDAFTWN  +        ++    +L L P TFVP +  +I+ Q+
Sbjct: 186 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 245

Query: 336 AEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQFLWDIGNLE 464
             + +    E Q  ++++ +K+++ V N  + DQF WD+   E
Sbjct: 246 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKE 287



 Score = 36.2 bits (82), Expect = 0.043
 Identities = 26/96 (27%), Positives = 45/96 (46%)
 Frame = +3

Query: 153 DNLVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLPATFVPQMLHSIQGQ 332
           D  V I+++I V      D F W+  + ++     A +   EL L   FV  + +SI+GQ
Sbjct: 259 DQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQ 318

Query: 333 LAEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQF 440
           L    S+  +     E  +P  +++ + NT   DQ+
Sbjct: 319 L----SWHQKTYAFSENPLP-TVEIAIRNTGDADQW 349

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>SNF5_BOVIN (Q5BIN2) SWI/SNF-related, matrix-associated, actin-dependent|
           regulator of chromatin subfamily B member 1
          Length = 385

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
 Frame = +3

Query: 159 LVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKL-PATFVPQMLHSIQGQL 335
           LVPIR+D+E+DGQ+ RDAFTWN  +        ++    +L L P TFVP +  +I+ Q+
Sbjct: 186 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 245

Query: 336 AEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQFLWDIGNLE 464
             + +    E Q  ++++ +K+++ V N  + DQF WD+   E
Sbjct: 246 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKE 287



 Score = 36.2 bits (82), Expect = 0.043
 Identities = 26/96 (27%), Positives = 45/96 (46%)
 Frame = +3

Query: 153 DNLVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLPATFVPQMLHSIQGQ 332
           D  V I+++I V      D F W+  + ++     A +   EL L   FV  + +SI+GQ
Sbjct: 259 DQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQ 318

Query: 333 LAEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQF 440
           L    S+  +     E  +P  +++ + NT   DQ+
Sbjct: 319 L----SWHQKTYAFSENPLP-TVEIAIRNTGDADQW 349

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>SNF5_CHICK (Q5ZK40) SWI/SNF-related, matrix-associated, actin-dependent|
           regulator of chromatin subfamily B member 1
          Length = 386

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
 Frame = +3

Query: 159 LVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKL-PATFVPQMLHSIQGQL 335
           LVPIR+D+E+DGQ+ RDAFTWN  +        ++    +L L P TFVP +  +I+ Q+
Sbjct: 187 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 246

Query: 336 AEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQFLWDIGNLE 464
             + +    E Q  ++++ +K+++ V N  + DQF WD+   E
Sbjct: 247 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKE 288



 Score = 36.2 bits (82), Expect = 0.043
 Identities = 26/96 (27%), Positives = 45/96 (46%)
 Frame = +3

Query: 153 DNLVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLPATFVPQMLHSIQGQ 332
           D  V I+++I V      D F W+  + ++     A +   EL L   FV  + +SI+GQ
Sbjct: 260 DQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQ 319

Query: 333 LAEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQF 440
           L    S+  +     E  +P  +++ + NT   DQ+
Sbjct: 320 L----SWHQKTYAFSENPLP-TVEIAIRNTGDADQW 350

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>SNF5_XENTR (Q6DFM1) SWI/SNF-related, matrix-associated, actin-dependent|
           regulator of chromatin subfamily B member 1
          Length = 378

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 37/103 (35%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
 Frame = +3

Query: 159 LVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKL-PATFVPQMLHSIQGQL 335
           LVPIR+D+E+DGQ+ RDAFTWN  +        A+    +L L P  FVP +  +I+ Q+
Sbjct: 179 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQI 238

Query: 336 AEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQFLWDIGNLE 464
             + +    E Q  ++++ +K+++ V N  + DQF WD+   E
Sbjct: 239 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKE 280



 Score = 36.2 bits (82), Expect = 0.043
 Identities = 26/96 (27%), Positives = 45/96 (46%)
 Frame = +3

Query: 153 DNLVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLPATFVPQMLHSIQGQ 332
           D  V I+++I V      D F W+  + ++     A +   EL L   FV  + +SI+GQ
Sbjct: 252 DQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQ 311

Query: 333 LAEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQF 440
           L    S+  +     E  +P  +++ + NT   DQ+
Sbjct: 312 L----SWHQKTYAFSENPLP-TVEIAIRNTGDADQW 342

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>SNF5_XENLA (Q6GQ82) SWI/SNF-related, matrix-associated, actin-dependent|
           regulator of chromatin subfamily B member 1
          Length = 378

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 37/103 (35%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
 Frame = +3

Query: 159 LVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKL-PATFVPQMLHSIQGQL 335
           LVPIR+D+E+DGQ+ RDAFTWN  +        A+    +L L P  FVP +  +I+ Q+
Sbjct: 179 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQI 238

Query: 336 AEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQFLWDIGNLE 464
             + +    E Q  ++++ +K+++ V N  + DQF WD+   E
Sbjct: 239 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKE 280



 Score = 36.2 bits (82), Expect = 0.043
 Identities = 26/96 (27%), Positives = 45/96 (46%)
 Frame = +3

Query: 153 DNLVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLPATFVPQMLHSIQGQ 332
           D  V I+++I V      D F W+  + ++     A +   EL L   FV  + +SI+GQ
Sbjct: 252 DQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQ 311

Query: 333 LAEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQF 440
           L    S+  +     E  +P  +++ + NT   DQ+
Sbjct: 312 L----SWHQKTYAFSENPLP-TVEIAIRNTGDADQW 342

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>SNF5_TETFL (O42467) SWI/SNF-related, matrix-associated, actin-dependent|
           regulator of chromatin subfamily B member 1
          Length = 373

 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 36/103 (34%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
 Frame = +3

Query: 159 LVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKL-PATFVPQMLHSIQGQL 335
           LVPIR+D+E++GQ+ RDAFTWN  +        A+    +L L P  FVP +  +I+ Q+
Sbjct: 174 LVPIRLDMEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIPSAIRQQI 233

Query: 336 AEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQFLWDIGNLE 464
             + +    E Q  ++++ +K+++ V N  + DQF WD+   E
Sbjct: 234 ESYPTDAILEEQTDQRVI-IKLNIHVGNISLVDQFEWDMSEKE 275



 Score = 35.0 bits (79), Expect = 0.095
 Identities = 25/96 (26%), Positives = 44/96 (45%)
 Frame = +3

Query: 153 DNLVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLPATFVPQMLHSIQGQ 332
           D  V I+++I V      D F W+  + ++     A +   EL     FV  + +SI+GQ
Sbjct: 247 DQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGQGGEFVTTIAYSIRGQ 306

Query: 333 LAEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQF 440
           L    S+  +     E  +P  +++ + NT   DQ+
Sbjct: 307 L----SWHQKAYAFSENPLP-TVEIAIRNTGAADQW 337

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>SFH1_YARLI (Q6C9N2) Chromatin structure remodeling complex protein SFH1 (SNF5|
           homolog 1)
          Length = 441

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
 Frame = +3

Query: 159 LVPIRVDIE-VDGQRYRDAFTWNPRDPDSEVIT---LAKRTAKELKLPATFVPQMLHSIQ 326
           L+PIRV +E +D  R +D F W   D D +++T    A  T  +L +P  +  QM   I+
Sbjct: 205 LIPIRVAVENIDVFRVQDFFLW---DADEKILTPEQFATLTCADLDVPIGYSAQMSAQIK 261

Query: 327 GQLAEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQFLWDI 452
            QLAE+ +       V+  ++ +++ + V+  +  D+F WD+
Sbjct: 262 KQLAEYTAAPALPKDVEVHVI-VELAVTVDKIVYEDKFEWDL 302

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>YA28_SCHPO (Q09699) Hypothetical protein C2F7.08c in chromosome I|
          Length = 632

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
 Frame = +3

Query: 117 RSSTVKFRMPTRDNLVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLP-- 290
           RS+  + ++P   +LVPIR++I+ D  + RD+FTWN  D    +   A++   +  +P  
Sbjct: 129 RSNLAQSKLPV--DLVPIRLEIDADRYKLRDSFTWNLYDKCISLDQFAEQICIDYDIPLH 186

Query: 291 -ATFVPQMLHSIQGQLAEFRSYEGQ 362
               V  +  SIQ Q+ ++   + Q
Sbjct: 187 NVHIVQNISKSIQAQINDYEPRKAQ 211



 Score = 33.9 bits (76), Expect = 0.21
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 14/110 (12%)
 Frame = +3

Query: 132 KFRMPTRDN--LVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLPATFVP 305
           K ++PT  N   + I++DI +      D F WN   P+S     A     +L L   F  
Sbjct: 242 KQQIPTVQNDLRILIKLDITIGRLNLIDQFEWNLFAPESSAEEFATVMCLDLGLSGEFCT 301

Query: 306 QMLHSIQGQLAEFRSY--------EGQEMQVKEK----IMPLKIDLRVNN 419
            + HSI+ Q   +  Y        +G E++ +E     + PLK  LR ++
Sbjct: 302 AVAHSIREQCQMYIKYLSLIGYLFDGSEIEDEEVRSYILPPLKNTLRFSD 351

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>SNF5_YEAST (P18480) Transcription regulatory protein SNF5 (SWI/SNF complex|
           component SNF5) (Transcription factor TYE4)
          Length = 905

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
 Frame = +3

Query: 147 TRDNLVPIRVDIEVDGQRY--RDAFTWNPRDPDSEVITLAKRTAKELKLPAT----FVPQ 308
           T + LVPIR++ + D  R+  RD   WN  D   ++        ++ +         +  
Sbjct: 453 TSEQLVPIRLEFDQDRDRFFLRDTLLWNKNDKLIKIEDFVDDMLRDYRFEDATREQHIDT 512

Query: 309 MLHSIQGQLAEFRSYE----------GQEMQVKEKIMPLKIDLRVNNTIVRDQFLWDIGN 458
           +  SIQ Q+ EF+             G +++++     +K+D+ V    + DQF W+I N
Sbjct: 513 ICQSIQEQIQEFQGNPYIELNQDRLGGDDLRIR-----IKLDIVVGQNQLIDQFEWEISN 567



 Score = 37.0 bits (84), Expect = 0.025
 Identities = 23/76 (30%), Positives = 37/76 (48%)
 Frame = +3

Query: 108 GAPRSSTVKFRMPTRDNLVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKL 287
           G P     + R+   D  + I++DI V   +  D F W   + D+     A+   +EL+L
Sbjct: 526 GNPYIELNQDRLGGDDLRIRIKLDIVVGQNQLIDQFEWEISNSDNCPEEFAESMCQELEL 585

Query: 288 PATFVPQMLHSIQGQL 335
           P  FV  + HSI+ Q+
Sbjct: 586 PGEFVTAIAHSIREQV 601

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>SFH1_KLULA (Q6CSR7) Chromatin structure remodeling complex protein SFH1 (SNF5|
           homolog 1)
          Length = 442

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
 Frame = +3

Query: 159 LVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLPATFVP------QMLHS 320
           +VPIR+++E  G +  D F WN  D        A    ++L  P    P      Q++  
Sbjct: 210 MVPIRLNVEFSGHKLADFFMWNLNDHSMTPEQFATILCQDLDFPVLSNPNNSPYTQIISM 269

Query: 321 IQGQLAEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQFLWDIGN 458
           I  QL E+ +     +QV +  + + +   +++ +  D F W++ +
Sbjct: 270 INEQLQEYETL--ASLQVPDLHVIINLTANLDSKLYDDTFEWNLND 313



 Score = 33.5 bits (75), Expect = 0.28
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 162 VPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLPATFVPQMLHSIQGQLAE 341
           V I +   +D + Y D F WN  D        A+   ++L L   FVP + HS+   L +
Sbjct: 290 VIINLTANLDSKLYDDTFEWNLNDDSLCPEQFAELVVQDLGLQREFVPAIAHSLHESLLK 349

Query: 342 FR 347
            +
Sbjct: 350 VK 351

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>SFH1_YEAST (Q06168) Chromatin structure remodeling complex protein SFH1 (SNF5|
           homolog 1)
          Length = 426

 Score = 38.9 bits (89), Expect = 0.007
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
 Frame = +3

Query: 159 LVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKL-PATFVPQMLHSIQGQL 335
           ++PI +DIE  G   +D F WN  D        A    K+L +  AT   Q+ + I+ QL
Sbjct: 203 MIPITLDIEHMGHTIKDQFLWNYNDDSISPEEFASIYCKDLDMTSATLQTQIANIIKEQL 262

Query: 336 AEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQFLWDIGN 458
            +  +    E+     ++ + +   + +    D F W++ +
Sbjct: 263 KDLENIAATEIMSDLHVI-INLTCNLQDRFFEDNFQWNLND 302

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>SFH1_SCHPO (Q9USM3) Chromatin structure remodeling complex protein SFH1 (SNF5|
           homolog 1)
          Length = 418

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
 Frame = +3

Query: 150 RDNLVPIRVDIEV-DGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLPA-TFVPQMLHSI 323
           RD  +PIR+DIE+ +  R +D F WN  +        A+    +L L    +  Q+  SI
Sbjct: 114 RDVYIPIRLDIELPNNYRLKDTFLWNMNEQVMTPDVFAQILCADLDLSTNVYGTQISSSI 173

Query: 324 QGQLAEFRSYEGQEM-QVKEKIMPLKIDLRVNNTIVRDQFLWDI 452
           + Q+ E+       M + +E ++   I +++      DQ  W++
Sbjct: 174 RAQIEEYAPVAEVPMPKGQEMLVVFNIQVQLAQLSYNDQVEWNL 217

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>SFH1_ASHGO (Q754R8) Chromatin structure remodeling complex protein SFH1 (SNF5|
           homolog 1)
          Length = 383

 Score = 36.6 bits (83), Expect = 0.033
 Identities = 22/102 (21%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
 Frame = +3

Query: 159 LVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLP--ATFVPQMLHSIQGQ 332
           ++PIR+++E +G +  D FTWN  D    +   A+   ++L      +   Q++ +I  Q
Sbjct: 155 VIPIRLNLEHNGHKIIDFFTWNLNDHSLTLEQFAQIYCQDLDFAHNLSLQNQIVAAINDQ 214

Query: 333 LAEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQFLWDIGN 458
           L E+ +     + V +  + + +   +++ +  D F W++ +
Sbjct: 215 LQEYETL--ASVVVPDLHVIINLTCNLDSKLYEDNFEWNLND 254



 Score = 31.6 bits (70), Expect = 1.1
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +3

Query: 162 VPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLPATFVPQMLHSIQGQLAE 341
           V I +   +D + Y D F WN  D        A+   ++L L   F+P + H++   + +
Sbjct: 231 VIINLTCNLDSKLYEDNFEWNLNDQTLSPEQFAELVVQDLGLTREFMPAIAHALYESILK 290

Query: 342 FR 347
            +
Sbjct: 291 IK 292

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>FOXE3_HUMAN (Q13461) Forkhead box protein E3 (Forkhead-related protein FKHL12)|
           (Forkhead-related transcription factor 8) (FREAC-8)
          Length = 319

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 24/69 (34%), Positives = 28/69 (40%)
 Frame = +2

Query: 152 GQPGADTRRHRGGRPALQGRLHLEPPRSRLGGHHPRQEDGQGAQASGHLCPSDAPLHPGA 331
           G+   D      G PAL       PP S L G  P +E  + A   G   P+ AP  PG 
Sbjct: 3   GRSDMDPPAAFSGFPALPAVAPSGPPPSPLAGAEPGREPEEAAAGRGEAAPTPAP-GPGR 61

Query: 332 IGRVPFLRG 358
             R P  RG
Sbjct: 62  RRRRPLQRG 70

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>CSRA_DESVH (Q72EP8) Carbon storage regulator homolog|
          Length = 78

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 272 GRPLGEGDDLRVGIAGVPGEGVPVALAVHLDVDAYRHQVVPR 147
           G  L  GDD+R+ + G+ G+ V + + V  D+  YR +V  R
Sbjct: 9   GESLHLGDDIRITVLGIQGKQVKIGIEVPGDMVVYREEVYRR 50

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>DPY7_CAEEL (P34688) Cuticle collagen dpy-7 precursor (Protein dumpy-7)|
          Length = 318

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 34/95 (35%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
 Frame = +2

Query: 137 PHADEGQPGADTRRHRGGRPALQG-RLHLEP---------PRSRLGGHHPRQEDGQGAQA 286
           P    G+PG D    R G+P L G  + L+P         P    G   P+ E G+  Q 
Sbjct: 105 PPGVSGEPGMDGANGRPGKPGLDGLDVPLDPEPAFPCVICPAGPPGTRGPQGEVGRPGQT 164

Query: 287 --SGHLCPSDAPLHPGAIGRVPFLRGAGDAG-QGE 382
             SGH      P  PG  GRV      GDAG QGE
Sbjct: 165 GESGH---PGLPGRPGKPGRV------GDAGPQGE 190

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>SFH1_CANGA (Q6FTV3) Chromatin structure remodeling complex protein SFH1 (SNF5|
           homolog 1)
          Length = 403

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
 Frame = +3

Query: 159 LVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKL--PATFVPQMLHSIQGQ 332
           L+PI +++E       DAF WN  D    V         +L L    +   Q++ SI  Q
Sbjct: 177 LIPITLNVEHGNNTISDAFVWNVNDTSISVEDFVTTYCNDLGLYGNVSLHSQIVSSINEQ 236

Query: 333 LAEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQFLWDIGN 458
           + E  +     + + +  + + +   +      D F W++ +
Sbjct: 237 IQELENV--ASLVIPDLEVVVNLTCTIQGKFFEDYFQWNLSD 276

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>ENT2_YEAST (Q05785) Epsin-2|
          Length = 613

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 25/110 (22%), Positives = 45/110 (40%)
 Frame = +3

Query: 114 PRSSTVKFRMPTRDNLVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLPA 293
           P  S+  ++      L   R+  + D QR R+   ++  DPD +      +  +ELK   
Sbjct: 169 PHDSSPSYQDDLEKALEESRITAQEDEQRRRELAQYDDEDPDFQAALQLSKEEEELK--- 225

Query: 294 TFVPQMLHSIQGQLAEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQFL 443
               Q L  +Q Q      ++    Q + +  P   D+   N I +D++L
Sbjct: 226 --QLQELQRLQKQQQSLSQFQAPLQQQQPQQQPAYYDI-FGNPISQDEYL 272

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>RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis protein 1|
           (Rab3-interacting molecule 1) (RIM 1)
          Length = 1615

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
 Frame = +2

Query: 134 VPHADEGQPGADTRRHRGGRPALQ---------GRLHLEPPRSRLGGHHPRQEDGQGAQA 286
           V   D   PGA   R++G  P+ Q          R   EPPR R       +++G+G Q 
Sbjct: 250 VSSQDTATPGAPLHRNKGAEPSQQALGPEQKQASRSRSEPPRERKKAPGLSEQNGKGGQK 309

Query: 287 SGHLCPSDAPLHPG 328
           S       + + PG
Sbjct: 310 SERKRVPKSVVQPG 323

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>ORN_PSESM (Q87VI6) Oligoribonuclease (EC 3.1.-.-)|
          Length = 178

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
 Frame = +3

Query: 27  AKEDSRNPHPNGGDGRTARTAMKTVSLGAPRSST---VKFRMPTRDNLVPIRVDIEVDGQ 197
           AK D  N   +GG G T R    T+S+    + T   +K  +P R +  PI  +     +
Sbjct: 55  AKMDEWNTRQHGGSGLTQRVRESTISMADAEAQTLAFIKLWVPERSS--PICGNSICQDR 112

Query: 198 RY--------RDAFTWNPRDPDSEVITLAKRTAKELKLPATFVPQMLHSIQGQLAEFRSY 353
           R+         + F +   D  S +  LA R A ELK         L  I+  +AE R Y
Sbjct: 113 RFLYRHMPALENYFHYRNLDV-STLKELAARWAPELKFKKGSTHLALDDIRESIAELRFY 171

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>CONG_BOVIN (P23805) Conglutinin precursor|
          Length = 371

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = +2

Query: 131 EVPHADEGQPGADTRRHRGGRPALQGRLHLEPPRSRLGGHHPRQEDGQGAQASGHLCPSD 310
           E PH ++G PG+     R GRP   G +  +     +G   P+ + G          P  
Sbjct: 57  ECPHGEKGDPGSPGPAGRAGRPGWVGPIGPKGDNGFVGEPGPKGDTG----------PRG 106

Query: 311 APLHPGAIGR 340
            P  PG  GR
Sbjct: 107 PPGMPGPAGR 116

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>EFTS_ONYPE (P61337) Elongation factor Ts (EF-Ts)|
          Length = 274

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 255 LAKRTAKELK-LPATFVPQMLHSIQGQLAEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVR 431
           L K+TAKEL   PA  + +++ +  G++ +      Q   VK     +K  L+ NNT V 
Sbjct: 207 LHKQTAKELSDKPAQMIEKIVENRLGKMLKDMCLSEQPF-VKNADQKVKDYLKANNTDVV 265

Query: 432 DQFLWDIGN 458
               W++GN
Sbjct: 266 SYVRWEMGN 274

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>DPO3B_STRCO (P27903) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 376

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
 Frame = +3

Query: 69  GRTARTAMKTVSLGAPRSSTVKFRMPTRDNLVPIRVDIEVDG------QRYRDA---FTW 221
           G    +A++ V++ A R  T+         L  +R++IE D        RYR A   F W
Sbjct: 129 GEVFASAVQQVAIAAGRDDTLPV-------LTGVRIEIEGDSVTLASTDRYRFAVREFLW 181

Query: 222 NPRDPD-SEVITLAKRTAKELKLPATFVPQMLHSIQG 329
            P +PD S V  +  +T ++     T   Q++ ++ G
Sbjct: 182 KPENPDISAVALVPAKTLQDTAKALTSGDQVILALSG 218

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>LTBP3_HUMAN (Q9NS15) Latent transforming growth factor beta-binding protein 3|
           precursor (LTBP-3)
          Length = 1302

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +2

Query: 158 PGADTRRHRGGRPALQGRLHLEPPRSRLGGHHPRQEDGQGAQASGHLCPSDAPLHP 325
           PG  +   +   P +  R+H  PP + +  H     + + A  S HL P   P HP
Sbjct: 213 PGQISAEVQAPPPVVNVRVH-HPPEASVQVHRIESSNAESAAPSQHLLPHPKPSHP 267

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>CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor|
          Length = 3137

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 27/80 (33%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
 Frame = +2

Query: 137  PHADEGQPGADTRRHRGGRPALQGRLHLEPPRSRLGGHHPRQEDG-QGAQASGHLCPSDA 313
            P A  GQPGA   R R G    +G      PR   G   PR E G  G    G   P   
Sbjct: 2255 PRAGGGQPGAPGERGRIGPLGRKGEPGNPGPRGPNGQQGPRGEMGDDGRDGIGGPGPKGR 2314

Query: 314  PLHPGAIGRVPFLRGAGDAG 373
                G +G      G GD G
Sbjct: 2315 KGERGFVGYPGPKGGPGDRG 2334

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>COL19_CAEEL (P18835) Cuticle collagen 19 precursor|
          Length = 289

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
 Frame = +2

Query: 137 PHADEGQPGADTRRHRGGRPALQGRLHLEPPRSRLG-GHHPRQEDGQG-AQASGHLCPSD 310
           P    G+PG + +  + GRP  QG      PR   G   +P      G A  +G+     
Sbjct: 199 PAGPRGEPGTEYKPGQPGRPGPQG------PRGETGPAGNPGAPGNDGEAGKNGNAGRPG 252

Query: 311 APLHPGAIGRVPFLRGAGDAGQGED--YAP 394
            P HPG  G VP  +G  DA  G D  Y P
Sbjct: 253 PPGHPGKNG-VPGQKGE-DAAPGPDAGYCP 280

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>AGO2_DROME (Q9VUQ5) Argonaute 2 protein|
          Length = 1214

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 24/87 (27%), Positives = 32/87 (36%)
 Frame = +2

Query: 158 PGADTRRHRGGRPALQGRLHLEPPRSRLGGHHPRQEDGQGAQASGHLCPSDAPLHPGAIG 337
           PG     H+ GR   +G     PP  + GGH   Q+  QG +      PS         G
Sbjct: 138 PGQQQGGHQQGRQGQEGGYQQRPPGQQQGGH---QQGRQGQEGGYQQRPSGQQQGGHQQG 194

Query: 338 RVPFLRGAGDAGQGEDYAPQD*PPSEQ 418
           R           QG++   Q  PP +Q
Sbjct: 195 R-----------QGQEGGYQQRPPGQQ 210



 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 158 PGADTRRHRGGRPALQGRLHLEPPRSRLGGHHPRQEDGQGAQASGH 295
           PG     H+ GR   +G     PP  + GGH    E G+  Q  G+
Sbjct: 253 PGQQQGGHQQGRQGQEGGYQQRPPGQQQGGH----EQGRQGQEGGY 294

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>RIBD_CHLMU (Q9PLJ6) Riboflavin biosynthesis protein ribD [Includes:|
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (EC 3.5.4.26) (Riboflavin-specific deaminase);
           5-amino-6-(5-phosphoribosylamino)uracil reductase (EC
           1.1.1.193) (HTP reductase)]
          Length = 371

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 93  KTVSLGAPRSSTVKFRMPTRD--NLVPIRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKR 266
           +TV L  PR S    RMP+ D     P+RV ++  G    DA  WNP D  + ++   ++
Sbjct: 200 RTVCLDNPRLSA---RMPSGDLYERQPLRVVVDSRGSVPLDARVWNP-DSGNVLLATTEQ 255

Query: 267 TAKE 278
            +KE
Sbjct: 256 CSKE 259

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>LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-binding protein 3|
           precursor (LTBP-3)
          Length = 1268

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 158 PGADTRRHRGGRPALQGRLHLEPPRSRLGGHHPRQEDGQGAQASGHLCPSDAPLHP 325
           PG  +   +   P +  R+H  PP + +  H     + +G  +S HL P   P HP
Sbjct: 211 PGQISAEVQAPPPVVNVRVH-HPPEASVQVHRIEGPNAEGPASSQHLLPHPKPPHP 265

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>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
           (Protein FB19)
          Length = 925

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
 Frame = +2

Query: 152 GQPGADTRRHRGGRPALQG--RLHLEPPRSRLGG---HHPRQEDGQGAQASGHLCPSDAP 316
           G  G   R H G    + G  R H E P   +GG   H P +  G G  A G   P + P
Sbjct: 778 GGMGGGHRPHEGPGGGMGGGHRPH-EGPGGGMGGGSGHRPHEGPGGGMGAGGGHRPHEGP 836

Query: 317 LHPGAIGRVP 346
            H G  G  P
Sbjct: 837 GHGGPHGHRP 846

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>PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9|
          Length = 736

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 33/109 (30%), Positives = 38/109 (34%), Gaps = 1/109 (0%)
 Frame = +2

Query: 137 PHADEGQPGA-DTRRHRGGRPALQGRLHLEPPRSRLGGHHPRQEDGQGAQASGHLCPSDA 313
           P A+   PGA    R RG  P  +G     PP    GG+ P    G G   +G       
Sbjct: 307 PSAERMNPGARGGYRGRGYGPPGRGGYGYGPPPGSRGGYGPPGRGGYGPGPNGR------ 360

Query: 314 PLHPGAIGRVPFLRGAGDAGQGEDYAPQD*PPSEQYDS*RSVLVGYRQP 460
               G  G  P  RG    G G     +  PP  QYD   S    Y  P
Sbjct: 361 ----GGYGPPP--RG----GYGPPMRGRAPPPGYQYDRRGSPAEAYGPP 399

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>SYQ_RALSO (Q8Y199) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 580

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 288 PATFVPQMLHSIQGQLAEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQFLWDI 452
           P T  P    S++  LA FR     + Q  + ++  +ID+   N ++RD  L+ I
Sbjct: 161 PGTPSPFRDRSVEENLALFRDMRAGKYQDGQHVLRARIDMAAPNIVMRDPVLYRI 215

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>PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regulatory subunit 10|
            (MHC class I region proline-rich protein CAT53)
          Length = 940

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 31/104 (29%), Positives = 37/104 (35%), Gaps = 14/104 (13%)
 Frame = +2

Query: 137  PHADEGQP---GADTRRHRGGRPALQG----RLHLEPPRSRLG---GHHPRQEDGQGAQA 286
            PH   G     G   R H G    + G    R H E P   +G   GH P +  G     
Sbjct: 784  PHEGPGSSMGGGGGHRPHEGPGGGISGGSGHRPH-EGPGGGMGAGGGHRPHEGPGGSMGG 842

Query: 287  SGHLCPSDAPLHPGAIGR----VPFLRGAGDAGQGEDYAPQD*P 406
            SG   P + P H G  G     VP  RG    G   ++   D P
Sbjct: 843  SGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPHEHRGHDGP 886

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>BCSA5_ACEXY (Q9WX75) Putative cellulose synthase 3 [Includes: Cellulose synthase|
            catalytic subunit [UDP-forming] (EC 2.4.1.12); Cyclic
            di-GMP-binding domain (Cellulose synthase 3 regulatory
            subunit)]
          Length = 1518

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
 Frame = +3

Query: 105  LGAPRSSTVKFRMPTRDNLVPIRVDIEVDGQRYRDAFTW-----NPRDPDSEVITLAKRT 269
            L  P S+T+    P   N V + V++ VD +  R A        NP D    V+ +  RT
Sbjct: 998  LSFPVSTTI----PASGNAVEVGVNLPVDAEGGRPAGPMLAEVANPNDRWGTVLVVTGRT 1053

Query: 270  AKELKLPA---TFVPQMLHSIQGQLAEFRSYE 356
            A+E+++ A    F P  L  +  ++    S E
Sbjct: 1054 AQEVEVAARALVFSPDTLGGVASKVVSDVSLE 1085

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>BCSA4_ACEXY (Q9RBJ2) Putative cellulose synthase 2 [Includes: Cellulose synthase|
            catalytic subunit [UDP-forming] (EC 2.4.1.12); Cyclic
            di-GMP-binding domain (Cellulose synthase 2 regulatory
            subunit)]
          Length = 1518

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
 Frame = +3

Query: 105  LGAPRSSTVKFRMPTRDNLVPIRVDIEVDGQRYRDAFTW-----NPRDPDSEVITLAKRT 269
            L  P S+T+    P   N V + V++ VD +  R A        NP D    V+ +  RT
Sbjct: 998  LSFPVSTTI----PASGNAVEVGVNLPVDAEGGRPAGPMLAEVANPNDRWGTVLVVTGRT 1053

Query: 270  AKELKLPA---TFVPQMLHSIQGQLAEFRSYE 356
            A+E+++ A    F P  L  +  ++    S E
Sbjct: 1054 AQEVEVAARALVFSPDTLGGVASKVVSDVSLE 1085

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>PAR4_RAT (Q920E0) Proteinase-activated receptor 4 precursor (PAR-4)|
           (Thrombin receptor-like 3) (Coagulation factor II
           receptor-like 3)
          Length = 395

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
 Frame = +3

Query: 3   LAPSTAAQAKEDSRNPHPNGGDGRTARTAMKTVSLGAPRSSTVKFRMPTRDNLVP----- 167
           L P+      +    P+P G  G+       T+ L A   + +   +PTR  LVP     
Sbjct: 40  LRPTVELNESKSPDKPNPRGFPGKPCANNSDTLELPASSEALLLGWVPTR--LVPAIYGL 97

Query: 168 -IRVDIEVDGQRYRDAFTWNPRDPDSEVITLAKRTAKELKLPATFVPQMLHSIQGQ 332
            + V +  +G       T  PR P +  I L      +L L     P++++ ++GQ
Sbjct: 98  VVVVGLPANGLALWVLATRVPRLPST--ILLMNLAVADLLLALVLPPRLVYHLRGQ 151

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>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 28/84 (33%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
 Frame = +2

Query: 137 PHADEGQPGADTRRHRGGRPALQGRLHLE-PPRSRLGGHHPRQEDGQGAQASGHLCPSDA 313
           P  D G PGA   +   G P  +G   L   P  R G   P  E G+G  A+G   P  A
Sbjct: 661 PKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKG--AAGPPGPPGA 718

Query: 314 PLHPGAIGRVPFLRGAGDAGQGED 385
              PG  G      G G  G   D
Sbjct: 719 AGTPGLQGMPGERGGLGSPGPKGD 742

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>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)|
          Length = 1027

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +2

Query: 152 GQPGADTRRHRGGRPALQGRLHLEPPRSRLGGHHPRQEDG-QGAQ----ASGHLCPSDAP 316
           G PG+D R  + GRP ++G+   +  +   G   P+   G QG      A G    + AP
Sbjct: 373 GNPGSDGRPGKDGRPGIRGK---DGKQGEQGPQGPQGLAGLQGRAGPPGARGEPGKNGAP 429

Query: 317 LHPGAIGRVPFLRGAGDAGQ 376
             PGA G        GDAG+
Sbjct: 430 GEPGAHGE------QGDAGK 443

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>ATG2_PICPA (Q9HFR4) Autophagy-related protein 2 (Glucose-induced selective|
            autophagy protein 11) (Pexophagy zeocin-resistant mutant
            protein 7)
          Length = 1862

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 24   QAKEDSRNPHPNGGDGRTARTAMKTVSLGAPRSSTVKFRMPTRDNLV-PIRVDIEVDGQR 200
            + K DS+N HP G         M  +S+G   S +V F   +  +L+ P+ V++  D  R
Sbjct: 988  EIKLDSKNSHPLGNSFLLLLMDMGYISMGMLSSVSVSFETESSASLIAPVNVNVMCDTLR 1047

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>MSHM_SARGL (O63852) Mitochondrial MutS protein homolog|
          Length = 982

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = -2

Query: 344  ELCQLPLDGVEHLRDKGGRKLELLGRPLGEGDDLRVGIAGVPGEGVPVALAVHLDVDAYR 165
            E+C  P D V H++ K   K +L  R L    +L           VPV  + HLD+   +
Sbjct: 906  EICGAPADAVHHIKPKSEHK-KLCNRKLNRRSNL-----------VPVCSSCHLDIHRNK 953

Query: 164  HQVVPRRHAELH 129
              ++  +    H
Sbjct: 954  ISILGWKRTPKH 965

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>HIS1_HALSA (Q9HN53) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)|
           (ATP-PRT)
          Length = 282

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
 Frame = -2

Query: 302 DKGGRKLELLGRPLGEGDDLRVGIAGVPGEGVPVALAVHLDVDAYRHQVVPRRH-----A 138
           D  G++  +L  P    DD++   A +PG G P  L V        H VVP R      +
Sbjct: 206 DAHGKRYVMLNAPADRLDDVK---AVLPGLGGPTVLDVDEPGTVAVHAVVPERDVFEAIS 262

Query: 137 ELHSGGARGAEAHRLHR 87
           EL + GA G     + R
Sbjct: 263 ELKAVGASGILVTEIER 279

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>CSRA3_PSESM (Q87Z65) Carbon storage regulator homolog 3|
          Length = 62

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 275 LGRPLGEGDDLRVGIAGVPGEGVPVALAVHLDVDAYRHQVVPRRHAEL 132
           +G  +  GD++ V I GV G  V + +    +V  +R ++  R  AEL
Sbjct: 8   VGESINIGDEITVTILGVQGLQVRLGINAPKNVSVHREEIYKRIQAEL 55

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>IER2_HUMAN (Q9BTL4) Immediate early response gene 2 protein (Protein ETR101)|
          Length = 223

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 6   APSTAAQAKEDSRNPHPNGGDGRTARTAMKTVSLGAPRSSTV 131
           A STA  A  D  +P P   D + A TA +T +  APR + V
Sbjct: 77  AESTAETATPDGEHPFPEPMDTQEAPTAEETSACCAPRPAKV 118

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>DNAA_STRCH (Q9ZH75) Chromosomal replication initiator protein dnaA|
          Length = 624

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 24/80 (30%), Positives = 30/80 (37%)
 Frame = +2

Query: 152 GQPGADTRRHRGGRPALQGRLHLEPPRSRLGGHHPRQEDGQGAQASGHLCPSDAPLHPGA 331
           G+P      +R G P  QG     P R         Q+ GQG +  GH         PG 
Sbjct: 217 GRPQQPQHDYRSGPPEHQGYEQQRPDR---------QDQGQGPRQGGHGPGRTGGSVPGP 267

Query: 332 IGRVPFLRGAGDAGQGEDYA 391
           +G  P    A   G GE +A
Sbjct: 268 MGAQP----APAPGPGEPHA 283

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>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:|
           Endostatin]
          Length = 1516

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 27/87 (31%), Positives = 31/87 (35%)
 Frame = +2

Query: 146 DEGQPGADTRRHRGGRPALQGRLHLEPPRSRLGGHHPRQEDGQGAQASGHLCPSDAPLHP 325
           + G PG   R    G P L G   L  P S LG   P  +   G Q      P   P   
Sbjct: 524 EPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQG-----PPGPPGRD 578

Query: 326 GAIGRVPFLRGAGDAGQGEDYAPQD*P 406
           G  GR       G+ G+  D  PQ  P
Sbjct: 579 GTPGRDGEPGDPGEDGKPGDTGPQGFP 605

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>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 28/91 (30%), Positives = 32/91 (35%), Gaps = 1/91 (1%)
 Frame = +2

Query: 137  PHADEGQPGADTRRHRGGRPALQGRLHLEPPRSRL-GGHHPRQEDGQGAQASGHLCPSDA 313
            P    GQPG      R G P   G    +P R    GG   R E+G             A
Sbjct: 996  PQGLPGQPGTAGEPGRDGNPGSDG----QPGRDGSPGGKGDRGENGSPGAPG-------A 1044

Query: 314  PLHPGAIGRVPFLRGAGDAGQGEDYAPQD*P 406
            P HPG  G V     +GD G+     P   P
Sbjct: 1045 PGHPGPPGPVGPSGKSGDRGETGPAGPSGAP 1075

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>RL2_HALMA (P20276) 50S ribosomal protein L2P (Hmal2) (Hl4)|
          Length = 239

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 329 PLDGVEHLRDKGGRKLELLGRPLGEGDDLRVGIAG--VPGEGVPVA 198
           P+  VE   + G R+L L    +G GD+L+VG++    PG  +P+A
Sbjct: 54  PVAAVEF--EDGDRRLILAPEGVGVGDELQVGVSAEIAPGNTLPLA 97

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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
 Frame = +2

Query: 146  DEGQPGADTRRHRGGR---------PALQGRLHLEPPRSRLGGHHPRQEDGQGAQASGHL 298
            + G PGAD R    GR         P L+G   L  PR   G   PR   G+   A G +
Sbjct: 1297 ERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPG-APGQV 1355

Query: 299  CPSDAPLHPGAIG 337
               + P  PG  G
Sbjct: 1356 IGGEGPGLPGRKG 1368

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>SYQ_PSEPK (Q88IU5) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 567

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +3

Query: 258 AKRTAKELKLPATFVPQMLHSIQGQLAEFRSYEGQEMQVKEKIMPLKIDLRVNNTIVRDQ 437
           AK     LK P    P    S++  L  F   +  E +  E+++  KID+   N  +RD 
Sbjct: 143 AKEYRGNLKEPGKNSPFRERSVEENLDLFARMKAGEFKDGERVLRAKIDMASPNMNLRDP 202

Query: 438 FLWDI 452
            L+ I
Sbjct: 203 ILYRI 207

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>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor|
          Length = 1356

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 26/90 (28%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
 Frame = +2

Query: 149  EGQPGADTRRHRGGRPALQGRLHLEPPRSRLGGHHPRQEDGQGAQ-----------ASGH 295
            +G PG +      G   + G      PR   G H P  +DG+              + GH
Sbjct: 1023 QGMPGPNGPSGETGSAGITGPAG---PRGPAGPHGPPGKDGRAGGHGAIGPVGHRGSPGH 1079

Query: 296  LCPSDAPLHPGAIGRVPFLRGAGDAGQGED 385
            L P+  P  PG  G       AG AG G D
Sbjct: 1080 LGPAGPPGSPGLPG------PAGPAGGGYD 1103

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>C1QT5_HUMAN (Q9BXJ0) Complement C1q tumor necrosis factor-related protein 5|
           precursor
          Length = 243

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
 Frame = +2

Query: 149 EGQPGADTRRHRGGRPALQGRLHLEPPRSRLGGHHPRQEDGQ---------GAQASGHLC 301
           +G PGA   +  GGRP L G      PR   G   P    G+          A+ S    
Sbjct: 56  DGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPAGECSVPPRSAFSAKRSESRV 115

Query: 302 --PSDAPL 319
             PSDAPL
Sbjct: 116 PPPSDAPL 123

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>YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6|
          Length = 278

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 31/95 (32%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
 Frame = +2

Query: 131 EVPHADEGQPGADTRRHRGGRPALQGRLHLEPP--RSRLGGHHPRQEDGQ--GAQASGHL 298
           E P  D G PGA       G+P   G+     P      G   P   DGQ   A A G  
Sbjct: 172 EGPAGDAGAPGAPGAPGNDGQPGQNGQRSTGTPGAAGAPGPQGPVGSDGQPGSAGAPGAP 231

Query: 299 CPSDAP---LHPGAIGRVPFLRGAGDAGQGEDYAP 394
            P+ AP     PGA G     +   D  QG D  P
Sbjct: 232 GPAGAPGVDGQPGANG-----QPGPDGEQGHDGQP 261

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>SSB_XANAC (Q8PIJ2) Single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 180

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = +2

Query: 254 PRQEDGQGAQASGHLCPSDAPLHPGAIGRVPFLRGAGDAGQGEDYAPQD*PPSEQ 418
           PRQ+ G G Q  G                     G G  G G+DYAP+   P++Q
Sbjct: 129 PRQQGGGGGQGGGGY-------------------GGGGGGGGQDYAPRRQQPAQQ 164

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>PAC2_PSES3 (P15558) Penicillin acylase 2 precursor (EC 3.5.1.11) (Penicillin|
           acylase II) (Penicillin amidase II) (Cephalosporin
           acylase II) [Contains: Penicillin acylase 2 small
           subunit (Penicillin acylase II small subunit);
           Penicillin acylase 2 large su
          Length = 773

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 354 RRNGTLPIAPGWSGASEGQRW 292
           R NG LP+ PGWSG  E + W
Sbjct: 440 RENGWLPV-PGWSGEHEWRGW 459


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,402,383
Number of Sequences: 219361
Number of extensions: 1283877
Number of successful extensions: 5281
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 4803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5255
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result