ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart61f05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK105251.1| Oryza sativa (japonica cultivar-group) cDNA clon... 428 e-117
2ref|XM_467545.1| Oryza sativa (japonica cultivar-group), mRNA 396 e-107
3dbj|AK073256.1| Oryza sativa (japonica cultivar-group) cDNA clon... 396 e-107
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
5dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
6gb|AY658940.1| Synthetic construct Peudomonas aeruginosa clone F... 42 1.6
7gb|AC012399.40| Mus musculus strain 129S6/SvEvTac clone rp21-184... 42 1.6
8emb|X54201.1|PAGORG Pseudomonas aeruginosa gor gene for glutathi... 42 1.6
9gb|AC084822.36| Mus musculus strain C57BL/6J clone rp23-47o21 ma... 42 1.6
10gb|AE004865.1| Pseudomonas aeruginosa PAO1, section 426 of 529 o... 42 1.6
11gb|AE004629.1| Pseudomonas aeruginosa PAO1, section 190 of 529 o... 42 1.6
12gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ... 42 1.6
13gb|AF051690.1|AF051690 Pseudomonas aeruginosa iron-uptake factor... 42 1.6
14emb|AL929159.4| Mouse DNA sequence from clone RP23-424F12 on chr... 42 1.6
15gb|BC053232.1| Danio rerio WW domain binding protein 2, mRNA (cD... 40 6.3
16gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 6.3
17dbj|AB225646.1| Aspergillus oryzae cDNA, contig sequence: AoEST2501 40 6.3
18dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 6.3
19dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.3
20ref|NM_199710.1| Danio rerio WW domain binding protein 2 (wbp2),... 40 6.3
21gb|AC011743.9| Homo sapiens BAC clone RP11-299O14 from 2, comple... 40 6.3
22emb|AL772282.9| Mouse DNA sequence from clone RP23-328F3 on chro... 40 6.3 
>dbj|AK105251.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-C11, full
            insert sequence
          Length = 1965

 Score =  428 bits (216), Expect = e-117
 Identities = 333/372 (89%)
 Strand = Plus / Plus

                                                                        
Query: 89   gatgaagacggtgagcctcggcgccccgcgctcctccactgtgaagttccgcatgccgac 148
            ||||||||||||||||||||||||| |  |  | ||  |||| |||||||||||||||||
Sbjct: 920  gatgaagacggtgagcctcggcgccgccaggccttcgtctgtcaagttccgcatgccgac 979

                                                                        
Query: 149  gagggacaacctggtgccgatacgcgtcgacatcgaggtggacggccagcgctacaggga 208
            |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 980  gagggataacctggtgccgatacgcgtcgacgtcgaggtggacggccagcgctacaggga 1039

                                                                        
Query: 209  cgccttcacctggaacccccgcgatcccgactcggaggtcatcaccctcgccaagaggac 268
            ||||||||||||||||||  |||| |||||||||||| |||| | | |||| ||||||||
Sbjct: 1040 cgccttcacctggaacccatgcgaccccgactcggagatcataagcttcgcgaagaggac 1099

                                                                        
Query: 269  ggccaaggagctcaagcttccggccacctttgtccctcagatgctccactccatccaggg 328
            ||||||||| |||||||| ||||||| ||| ||||| |||||||||||||||||||||||
Sbjct: 1100 ggccaaggacctcaagctgccggccaacttcgtcccccagatgctccactccatccaggg 1159

                                                                        
Query: 329  gcaattggcagagttccgttcctacgaggggcaggagatgcaggtcaaggagaagattat 388
            |||| || | ||||||||||||||||||||  ||||||||||| ||| |||||||||| |
Sbjct: 1160 gcaactgaccgagttccgttcctacgagggagaggagatgcagatcagggagaagattgt 1219

                                                                        
Query: 389  gcccctcaagattgacctccgagtgaacaatacgatagttagagatcagttcttgtggga 448
            |||||||||||||||||||||  | ||||||||  || | ||||||||||||||||||||
Sbjct: 1220 gcccctcaagattgacctccggataaacaatactgtaatcagagatcagttcttgtggga 1279

                        
Query: 449  tataggcaacct 460
            ||||||||||||
Sbjct: 1280 tataggcaacct 1291
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>ref|XM_467545.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1103

 Score =  396 bits (200), Expect = e-107
 Identities = 293/324 (90%)
 Strand = Plus / Plus

                                                                       
Query: 137 ccgcatgccgacgagggacaacctggtgccgatacgcgtcgacatcgaggtggacggcca 196
           ||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 13  ccgcaggccgacgagggataacctggtgccgatacgcgtcgacgtcgaggtggacggcca 72

                                                                       
Query: 197 gcgctacagggacgccttcacctggaacccccgcgatcccgactcggaggtcatcaccct 256
           ||||||||||||||||||||||||||||||  |||| |||||||||||| |||| | | |
Sbjct: 73  gcgctacagggacgccttcacctggaacccatgcgaccccgactcggagatcataagctt 132

                                                                       
Query: 257 cgccaagaggacggccaaggagctcaagcttccggccacctttgtccctcagatgctcca 316
           ||| ||||||||||||||||| |||||||| ||||||| ||| ||||| |||||||||||
Sbjct: 133 cgcgaagaggacggccaaggacctcaagctgccggccaacttcgtcccccagatgctcca 192

                                                                       
Query: 317 ctccatccaggggcaattggcagagttccgttcctacgaggggcaggagatgcaggtcaa 376
           |||||||||||||||| || | ||||||||||||||||||||  ||||||||||| ||| 
Sbjct: 193 ctccatccaggggcaactgaccgagttccgttcctacgagggagaggagatgcagatcag 252

                                                                       
Query: 377 ggagaagattatgcccctcaagattgacctccgagtgaacaatacgatagttagagatca 436
           |||||||||| ||||||||||||||||||||||  | ||||||||  || | ||||||||
Sbjct: 253 ggagaagattgtgcccctcaagattgacctccggataaacaatactgtaatcagagatca 312

                                   
Query: 437 gttcttgtgggatataggcaacct 460
           ||||||||||||||||||||||||
Sbjct: 313 gttcttgtgggatataggcaacct 336
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>dbj|AK073256.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023H11, full
           insert sequence
          Length = 1103

 Score =  396 bits (200), Expect = e-107
 Identities = 293/324 (90%)
 Strand = Plus / Plus

                                                                       
Query: 137 ccgcatgccgacgagggacaacctggtgccgatacgcgtcgacatcgaggtggacggcca 196
           ||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 13  ccgcaggccgacgagggataacctggtgccgatacgcgtcgacgtcgaggtggacggcca 72

                                                                       
Query: 197 gcgctacagggacgccttcacctggaacccccgcgatcccgactcggaggtcatcaccct 256
           ||||||||||||||||||||||||||||||  |||| |||||||||||| |||| | | |
Sbjct: 73  gcgctacagggacgccttcacctggaacccatgcgaccccgactcggagatcataagctt 132

                                                                       
Query: 257 cgccaagaggacggccaaggagctcaagcttccggccacctttgtccctcagatgctcca 316
           ||| ||||||||||||||||| |||||||| ||||||| ||| ||||| |||||||||||
Sbjct: 133 cgcgaagaggacggccaaggacctcaagctgccggccaacttcgtcccccagatgctcca 192

                                                                       
Query: 317 ctccatccaggggcaattggcagagttccgttcctacgaggggcaggagatgcaggtcaa 376
           |||||||||||||||| || | ||||||||||||||||||||  ||||||||||| ||| 
Sbjct: 193 ctccatccaggggcaactgaccgagttccgttcctacgagggagaggagatgcagatcag 252

                                                                       
Query: 377 ggagaagattatgcccctcaagattgacctccgagtgaacaatacgatagttagagatca 436
           |||||||||| ||||||||||||||||||||||  | ||||||||  || | ||||||||
Sbjct: 253 ggagaagattgtgcccctcaagattgacctccggataaacaatactgtaatcagagatca 312

                                   
Query: 437 gttcttgtgggatataggcaacct 460
           ||||||||||||||||||||||||
Sbjct: 313 gttcttgtgggatataggcaacct 336
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  155 bits (78), Expect = 2e-34
 Identities = 87/90 (96%)
 Strand = Plus / Plus

                                                                            
Query: 137      ccgcatgccgacgagggacaacctggtgccgatacgcgtcgacatcgaggtggacggcca 196
                ||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 30090670 ccgcaggccgacgagggataacctggtgccgatacgcgtcgacgtcgaggtggacggcca 30090729

                                              
Query: 197      gcgctacagggacgccttcacctggaaccc 226
                ||||||||||||||||||||||||||||||
Sbjct: 30090730 gcgctacagggacgccttcacctggaaccc 30090759



 Score =  107 bits (54), Expect = 3e-20
 Identities = 84/94 (89%)
 Strand = Plus / Plus

                                                                            
Query: 234      cccgactcggaggtcatcaccctcgccaagaggacggccaaggagctcaagcttccggcc 293
                |||||||||||| |||| | | |||| ||||||||||||||||| |||||||| ||||||
Sbjct: 30090864 cccgactcggagatcataagcttcgcgaagaggacggccaaggacctcaagctgccggcc 30090923

                                                  
Query: 294      acctttgtccctcagatgctccactccatccagg 327
                | ||| ||||| ||||||||||||||||||||||
Sbjct: 30090924 aacttcgtcccccagatgctccactccatccagg 30090957



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 67/75 (89%)
 Strand = Plus / Plus

                                                                            
Query: 324      caggggcaattggcagagttccgttcctacgaggggcaggagatgcaggtcaaggagaag 383
                ||||||||| || | ||||||||||||||||||||  ||||||||||| ||| |||||||
Sbjct: 30091057 caggggcaactgaccgagttccgttcctacgagggagaggagatgcagatcagggagaag 30091116

                               
Query: 384      attatgcccctcaag 398
                ||| |||||||||||
Sbjct: 30091117 attgtgcccctcaag 30091131



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 89       gatgaagacggtgagcctcggcgcc 113
                |||||||||||||||||||||||||
Sbjct: 30090526 gatgaagacggtgagcctcggcgcc 30090550



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                   
Query: 397      agattgacctccgagtgaacaatacgatagttagagatcagttcttgtggg 447
                |||||||||||||  | ||||||||  || | |||||||||||||||||||
Sbjct: 30091213 agattgacctccggataaacaatactgtaatcagagatcagttcttgtggg 30091263
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>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0685G12
          Length = 149155

 Score =  155 bits (78), Expect = 2e-34
 Identities = 87/90 (96%)
 Strand = Plus / Plus

                                                                         
Query: 137   ccgcatgccgacgagggacaacctggtgccgatacgcgtcgacatcgaggtggacggcca 196
             ||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 70267 ccgcaggccgacgagggataacctggtgccgatacgcgtcgacgtcgaggtggacggcca 70326

                                           
Query: 197   gcgctacagggacgccttcacctggaaccc 226
             ||||||||||||||||||||||||||||||
Sbjct: 70327 gcgctacagggacgccttcacctggaaccc 70356



 Score =  107 bits (54), Expect = 3e-20
 Identities = 84/94 (89%)
 Strand = Plus / Plus

                                                                         
Query: 234   cccgactcggaggtcatcaccctcgccaagaggacggccaaggagctcaagcttccggcc 293
             |||||||||||| |||| | | |||| ||||||||||||||||| |||||||| ||||||
Sbjct: 70461 cccgactcggagatcataagcttcgcgaagaggacggccaaggacctcaagctgccggcc 70520

                                               
Query: 294   acctttgtccctcagatgctccactccatccagg 327
             | ||| ||||| ||||||||||||||||||||||
Sbjct: 70521 aacttcgtcccccagatgctccactccatccagg 70554



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 67/75 (89%)
 Strand = Plus / Plus

                                                                         
Query: 324   caggggcaattggcagagttccgttcctacgaggggcaggagatgcaggtcaaggagaag 383
             ||||||||| || | ||||||||||||||||||||  ||||||||||| ||| |||||||
Sbjct: 70654 caggggcaactgaccgagttccgttcctacgagggagaggagatgcagatcagggagaag 70713

                            
Query: 384   attatgcccctcaag 398
             ||| |||||||||||
Sbjct: 70714 attgtgcccctcaag 70728



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 89    gatgaagacggtgagcctcggcgcc 113
             |||||||||||||||||||||||||
Sbjct: 70123 gatgaagacggtgagcctcggcgcc 70147



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                
Query: 397   agattgacctccgagtgaacaatacgatagttagagatcagttcttgtggg 447
             |||||||||||||  | ||||||||  || | |||||||||||||||||||
Sbjct: 70810 agattgacctccggataaacaatactgtaatcagagatcagttcttgtggg 70860
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>gb|AY658940.1| Synthetic construct Peudomonas aeruginosa clone FLH046880.01F
           PA4512 gene, partial cds
          Length = 900

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 179 catcgaggtggacggccagcgctac 203
           |||||||||||||||| ||||||||
Sbjct: 534 catcgaggtggacggcgagcgctac 558
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>gb|AC012399.40| Mus musculus strain 129S6/SvEvTac clone rp21-184c17 map 16, complete
             sequence
          Length = 146040

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 290   ggccacctttgtccctcagatgctc 314
             |||||||||||||||||||| ||||
Sbjct: 72176 ggccacctttgtccctcagaggctc 72152
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>emb|X54201.1|PAGORG Pseudomonas aeruginosa gor gene for glutathione reductase and ORF1
           for hypothetical protein, strain PAO8
          Length = 1803

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 181 tcgaggtggacggccagcgct 201
           |||||||||||||||||||||
Sbjct: 594 tcgaggtggacggccagcgct 614
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>gb|AC084822.36| Mus musculus strain C57BL/6J clone rp23-47o21 map 16, complete sequence
          Length = 195335

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 290    ggccacctttgtccctcagatgctc 314
              |||||||||||||||||||| ||||
Sbjct: 180043 ggccacctttgtccctcagaggctc 180067
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>gb|AE004865.1| Pseudomonas aeruginosa PAO1, section 426 of 529 of the complete
           genome
          Length = 10413

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 179 catcgaggtggacggccagcgctac 203
           |||||||||||||||| ||||||||
Sbjct: 629 catcgaggtggacggcgagcgctac 653
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>gb|AE004629.1| Pseudomonas aeruginosa PAO1, section 190 of 529 of the complete
            genome
          Length = 10541

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 181  tcgaggtggacggccagcgct 201
            |||||||||||||||||||||
Sbjct: 1052 tcgaggtggacggccagcgct 1072
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>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 290    ggccacctttgtccctcagatgctc 314
              |||||||||||||||||||| ||||
Sbjct: 111431 ggccacctttgtccctcagaggctc 111407
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>gb|AF051690.1|AF051690 Pseudomonas aeruginosa iron-uptake factor (piuC), hydroxamate-type
            ferrisiderophore receptor (piuA), and iron-uptake factor
            (piuB) genes, complete cds
          Length = 7701

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 179  catcgaggtggacggccagcgctac 203
            |||||||||||||||| ||||||||
Sbjct: 7687 catcgaggtggacggcgagcgctac 7663
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>emb|AL929159.4| Mouse DNA sequence from clone RP23-424F12 on chromosome 2, complete
             sequence
          Length = 98465

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 359   gcaggagatgcaggtcaagga 379
             |||||||||||||||||||||
Sbjct: 89215 gcaggagatgcaggtcaagga 89235
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>gb|BC053232.1| Danio rerio WW domain binding protein 2, mRNA (cDNA clone MGC:64061
           IMAGE:6794142), complete cds
          Length = 1205

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 41  ccgaaacccccacccgaacggcgg 64
           |||||||| |||||||||||||||
Sbjct: 120 ccgaaaccaccacccgaacggcgg 143
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 175     tcgacatcgaggtggacggc 194
               ||||||||||||||||||||
Sbjct: 2878415 tcgacatcgaggtggacggc 2878434
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>dbj|AB225646.1| Aspergillus oryzae cDNA, contig sequence: AoEST2501
          Length = 949

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 73  ggaccgcccggacggcgatgaagacggt 100
           |||| |||| ||||||||||||||||||
Sbjct: 811 ggactgccccgacggcgatgaagacggt 784
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 73     ggaccgcccggacggcgatgaagacggt 100
              |||| |||| ||||||||||||||||||
Sbjct: 274103 ggactgccccgacggcgatgaagacggt 274076
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 85      cggcgatgaagacggtgagc 104
               ||||||||||||||||||||
Sbjct: 2054977 cggcgatgaagacggtgagc 2054958
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>ref|NM_199710.1| Danio rerio WW domain binding protein 2 (wbp2), mRNA
          Length = 1205

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 41  ccgaaacccccacccgaacggcgg 64
           |||||||| |||||||||||||||
Sbjct: 120 ccgaaaccaccacccgaacggcgg 143
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>gb|AC011743.9| Homo sapiens BAC clone RP11-299O14 from 2, complete sequence
          Length = 114495

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 433  atcagttcttgtgggatata 452
            ||||||||||||||||||||
Sbjct: 4750 atcagttcttgtgggatata 4769
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>emb|AL772282.9| Mouse DNA sequence from clone RP23-328F3 on chromosome 2, complete
             sequence
          Length = 188624

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   atgctccactccatccaggg 328
             ||||||||||||||||||||
Sbjct: 90599 atgctccactccatccaggg 90618


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,803,595
Number of Sequences: 3902068
Number of extensions: 2803595
Number of successful extensions: 54471
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54279
Number of HSP's gapped (non-prelim): 192
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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