ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart61f03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121520.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028J23, full insert sequence Length = 1624 Score = 392 bits (198), Expect = e-106 Identities = 346/394 (87%), Gaps = 6/394 (1%) Strand = Plus / Plus Query: 53 agatggtggagatcccggtgatcgacctgcggctcgccggcgca-----cggc-cggagg 106 |||||||||||||||||| ||||||||||||||| ||||||| |||| |||||| Sbjct: 421 agatggtggagatcccggcgatcgacctgcggctggccggcggcggcggcggcgcggagg 480 Query: 107 actcggcgcggctgcgggacgcgtgcgagcgcttgggctgcttccgcgtgtccggccacg 166 | ||||| ||||||| |||||||||| ||| ||||||||||||| ||||| || |||| Sbjct: 481 agacggcgaggctgcgcgacgcgtgcgcgcggctgggctgcttccgggtgtcggggcacg 540 Query: 167 gcgtgcccgcggcgctccaggcggagatgaaggcctccgtgcgcgcgctcttcgacctcc 226 ||||||| ||| ||||||||| |||||||||||| | |||||||||||||||||||||| Sbjct: 541 gcgtgccgccggggctccaggccgagatgaaggccgcggtgcgcgcgctcttcgacctcc 600 Query: 227 ccgacgaagccaagcgccgcaacacggacatcatcgccggcagcggctacgtcgcgccca 286 ||||||| ||||||||||||||| | ||||||||| | ||||||||||||||| ||||| Sbjct: 601 ccgacgacgccaagcgccgcaacgccgacatcatcccgggcagcggctacgtcccgcccg 660 Query: 287 gccccgccaacccgctctacgaggccttcggcctcctggacgccgccgtccccgccgacg 346 || | |||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct: 661 gcacagccaacccgctctacgaggccttcggcctctgcgacgccgccgcccccgccgacg 720 Query: 347 tcgacgccttctgcgcgcgcctcgacgcgccgcctcacgccagggagaccgtcaaggctt 406 |||||||||||||||| ||||||||||||||||| |||| |||||||||||| ||||| | Sbjct: 721 tcgacgccttctgcgcccgcctcgacgcgccgccccacgtcagggagaccgtgaaggcgt 780 Query: 407 acgccgaggcgatgcacgagctgatcgtggacgt 440 |||||||| ||||||| ||||||||||||||| Sbjct: 781 acgccgagaggatgcactcgctgatcgtggacgt 814
>dbj|AK105400.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C10, full insert sequence Length = 1608 Score = 392 bits (198), Expect = e-106 Identities = 346/394 (87%), Gaps = 6/394 (1%) Strand = Plus / Plus Query: 53 agatggtggagatcccggtgatcgacctgcggctcgccggcgca-----cggc-cggagg 106 |||||||||||||||||| ||||||||||||||| ||||||| |||| |||||| Sbjct: 419 agatggtggagatcccggcgatcgacctgcggctggccggcggcggcggcggcgcggagg 478 Query: 107 actcggcgcggctgcgggacgcgtgcgagcgcttgggctgcttccgcgtgtccggccacg 166 | ||||| ||||||| |||||||||| ||| ||||||||||||| ||||| || |||| Sbjct: 479 agacggcgaggctgcgcgacgcgtgcgcgcggctgggctgcttccgggtgtcggggcacg 538 Query: 167 gcgtgcccgcggcgctccaggcggagatgaaggcctccgtgcgcgcgctcttcgacctcc 226 ||||||| ||| ||||||||| |||||||||||| | |||||||||||||||||||||| Sbjct: 539 gcgtgccgccggggctccaggccgagatgaaggccgcggtgcgcgcgctcttcgacctcc 598 Query: 227 ccgacgaagccaagcgccgcaacacggacatcatcgccggcagcggctacgtcgcgccca 286 ||||||| ||||||||||||||| | ||||||||| | ||||||||||||||| ||||| Sbjct: 599 ccgacgacgccaagcgccgcaacgccgacatcatcccgggcagcggctacgtcccgcccg 658 Query: 287 gccccgccaacccgctctacgaggccttcggcctcctggacgccgccgtccccgccgacg 346 || | |||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct: 659 gcacagccaacccgctctacgaggccttcggcctctgcgacgccgccgcccccgccgacg 718 Query: 347 tcgacgccttctgcgcgcgcctcgacgcgccgcctcacgccagggagaccgtcaaggctt 406 |||||||||||||||| ||||||||||||||||| |||| |||||||||||| ||||| | Sbjct: 719 tcgacgccttctgcgcccgcctcgacgcgccgccccacgtcagggagaccgtgaaggcgt 778 Query: 407 acgccgaggcgatgcacgagctgatcgtggacgt 440 |||||||| ||||||| ||||||||||||||| Sbjct: 779 acgccgagaggatgcactcgctgatcgtggacgt 812
>ref|XM_472862.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 903 Score = 389 bits (196), Expect = e-105 Identities = 344/392 (87%), Gaps = 6/392 (1%) Strand = Plus / Plus Query: 55 atggtggagatcccggtgatcgacctgcggctcgccggcgca-----cggc-cggaggac 108 |||||||||||||||| ||||||||||||||| ||||||| |||| ||||||| Sbjct: 1 atggtggagatcccggcgatcgacctgcggctggccggcggcggcggcggcgcggaggag 60 Query: 109 tcggcgcggctgcgggacgcgtgcgagcgcttgggctgcttccgcgtgtccggccacggc 168 ||||| ||||||| |||||||||| ||| ||||||||||||| ||||| || |||||| Sbjct: 61 acggcgaggctgcgcgacgcgtgcgcgcggctgggctgcttccgggtgtcggggcacggc 120 Query: 169 gtgcccgcggcgctccaggcggagatgaaggcctccgtgcgcgcgctcttcgacctcccc 228 ||||| ||| ||||||||| |||||||||||| | |||||||||||||||||||||||| Sbjct: 121 gtgccgccggggctccaggccgagatgaaggccgcggtgcgcgcgctcttcgacctcccc 180 Query: 229 gacgaagccaagcgccgcaacacggacatcatcgccggcagcggctacgtcgcgcccagc 288 ||||| ||||||||||||||| | ||||||||| | ||||||||||||||| ||||| || Sbjct: 181 gacgacgccaagcgccgcaacgccgacatcatcccgggcagcggctacgtcccgcccggc 240 Query: 289 cccgccaacccgctctacgaggccttcggcctcctggacgccgccgtccccgccgacgtc 348 | |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct: 241 acagccaacccgctctacgaggccttcggcctctgcgacgccgccgcccccgccgacgtc 300 Query: 349 gacgccttctgcgcgcgcctcgacgcgccgcctcacgccagggagaccgtcaaggcttac 408 |||||||||||||| ||||||||||||||||| |||| |||||||||||| ||||| ||| Sbjct: 301 gacgccttctgcgcccgcctcgacgcgccgccccacgtcagggagaccgtgaaggcgtac 360 Query: 409 gccgaggcgatgcacgagctgatcgtggacgt 440 |||||| ||||||| ||||||||||||||| Sbjct: 361 gccgagaggatgcactcgctgatcgtggacgt 392
>emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21, complete sequence Length = 160155 Score = 341 bits (172), Expect = 1e-90 Identities = 302/344 (87%), Gaps = 6/344 (1%) Strand = Plus / Minus Query: 53 agatggtggagatcccggtgatcgacctgcggctcgccggcgca-----cggc-cggagg 106 |||||||||||||||||| ||||||||||||||| ||||||| |||| |||||| Sbjct: 93356 agatggtggagatcccggcgatcgacctgcggctggccggcggcggcggcggcgcggagg 93297 Query: 107 actcggcgcggctgcgggacgcgtgcgagcgcttgggctgcttccgcgtgtccggccacg 166 | ||||| ||||||| |||||||||| ||| ||||||||||||| ||||| || |||| Sbjct: 93296 agacggcgaggctgcgcgacgcgtgcgcgcggctgggctgcttccgggtgtcggggcacg 93237 Query: 167 gcgtgcccgcggcgctccaggcggagatgaaggcctccgtgcgcgcgctcttcgacctcc 226 ||||||| ||| ||||||||| |||||||||||| | |||||||||||||||||||||| Sbjct: 93236 gcgtgccgccggggctccaggccgagatgaaggccgcggtgcgcgcgctcttcgacctcc 93177 Query: 227 ccgacgaagccaagcgccgcaacacggacatcatcgccggcagcggctacgtcgcgccca 286 ||||||| ||||||||||||||| | ||||||||| | ||||||||||||||| ||||| Sbjct: 93176 ccgacgacgccaagcgccgcaacgccgacatcatcccgggcagcggctacgtcccgcccg 93117 Query: 287 gccccgccaacccgctctacgaggccttcggcctcctggacgccgccgtccccgccgacg 346 || | |||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct: 93116 gcacagccaacccgctctacgaggccttcggcctctgcgacgccgccgcccccgccgacg 93057 Query: 347 tcgacgccttctgcgcgcgcctcgacgcgccgcctcacgccagg 390 |||||||||||||||| ||||||||||||||||| |||| |||| Sbjct: 93056 tcgacgccttctgcgcccgcctcgacgcgccgccccacgtcagg 93013 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 387 cagggagaccgtcaaggcttacgccgaggcgatgcacgagctgatcgtggacgt 440 |||||||||||| ||||| ||||||||| ||||||| ||||||||||||||| Sbjct: 92917 cagggagaccgtgaaggcgtacgccgagaggatgcactcgctgatcgtggacgt 92864
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 341 bits (172), Expect = 1e-90 Identities = 302/344 (87%), Gaps = 6/344 (1%) Strand = Plus / Minus Query: 53 agatggtggagatcccggtgatcgacctgcggctcgccggcgca-----cggc-cggagg 106 |||||||||||||||||| ||||||||||||||| ||||||| |||| |||||| Sbjct: 23772444 agatggtggagatcccggcgatcgacctgcggctggccggcggcggcggcggcgcggagg 23772385 Query: 107 actcggcgcggctgcgggacgcgtgcgagcgcttgggctgcttccgcgtgtccggccacg 166 | ||||| ||||||| |||||||||| ||| ||||||||||||| ||||| || |||| Sbjct: 23772384 agacggcgaggctgcgcgacgcgtgcgcgcggctgggctgcttccgggtgtcggggcacg 23772325 Query: 167 gcgtgcccgcggcgctccaggcggagatgaaggcctccgtgcgcgcgctcttcgacctcc 226 ||||||| ||| ||||||||| |||||||||||| | |||||||||||||||||||||| Sbjct: 23772324 gcgtgccgccggggctccaggccgagatgaaggccgcggtgcgcgcgctcttcgacctcc 23772265 Query: 227 ccgacgaagccaagcgccgcaacacggacatcatcgccggcagcggctacgtcgcgccca 286 ||||||| ||||||||||||||| | ||||||||| | ||||||||||||||| ||||| Sbjct: 23772264 ccgacgacgccaagcgccgcaacgccgacatcatcccgggcagcggctacgtcccgcccg 23772205 Query: 287 gccccgccaacccgctctacgaggccttcggcctcctggacgccgccgtccccgccgacg 346 || | |||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct: 23772204 gcacagccaacccgctctacgaggccttcggcctctgcgacgccgccgcccccgccgacg 23772145 Query: 347 tcgacgccttctgcgcgcgcctcgacgcgccgcctcacgccagg 390 |||||||||||||||| ||||||||||||||||| |||| |||| Sbjct: 23772144 tcgacgccttctgcgcccgcctcgacgcgccgccccacgtcagg 23772101 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 387 cagggagaccgtcaaggcttacgccgaggcgatgcacgagctgatcgtggacgt 440 |||||||||||| ||||| ||||||||| ||||||| ||||||||||||||| Sbjct: 23772005 cagggagaccgtgaaggcgtacgccgagaggatgcactcgctgatcgtggacgt 23771952
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 234 bits (118), Expect = 2e-58 Identities = 279/330 (84%), Gaps = 2/330 (0%) Strand = Plus / Minus Query: 62 agatcccggtgatcgacctgcggctcgccggcgcacggccggaggactcggcgcggctgc 121 ||||||||||||||||||||||||||||||||| ||| | || | |||||||||| Sbjct: 22929896 agatcccggtgatcgacctgcggctcgccggcgaggcgcccggcgaggccgcgcggctgc 22929837 Query: 122 gggacgcgtgcg-agcgcttgggctgcttccgcgtgtccggccacggcgtgcccgcggcg 180 | |||||| ||| |||| ||||||||||||||||||| |||||||||||||| || | Sbjct: 22929836 gcgacgcg-gcgcggcgcctgggctgcttccgcgtgtcgggccacggcgtgccgcgggag 22929778 Query: 181 ctccaggcggagatgaaggcctccgtgcgcgcgctcttcgacctccccgacgaagccaag 240 |||||||| | |||| |||| |||||||||| || ||||||||||||| ||| |||||| Sbjct: 22929777 ctccaggccggcatgagggccgccgtgcgcgccctgttcgacctccccggcgacgccaag 22929718 Query: 241 cgccgcaacacggacatcatcgccggcagcggctacgtcgcgcccagccccgccaacccg 300 ||||||||| | ||| ||||| ||||||||||||| | ||||| ||| ||||||||||| Sbjct: 22929717 cgccgcaacgccgacgtcatccacggcagcggctacatggcgccgagcgccgccaacccg 22929658 Query: 301 ctctacgaggccttcggcctcctggacgccgccgtccccgccgacgtcgacgccttctgc 360 || |||||||| ||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 22929657 ctgtacgaggcgttcggcctctacgacgccgcgtcccccgccgacgtcgacgccttctgt 22929598 Query: 361 gcgcgcctcgacgcgccgcctcacgccagg 390 | |||||||||||||||| ||||||||| Sbjct: 22929597 tcctgcctcgacgcgccgccgcacgccagg 22929568
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016G10 Length = 143211 Score = 234 bits (118), Expect = 2e-58 Identities = 279/330 (84%), Gaps = 2/330 (0%) Strand = Plus / Minus Query: 62 agatcccggtgatcgacctgcggctcgccggcgcacggccggaggactcggcgcggctgc 121 ||||||||||||||||||||||||||||||||| ||| | || | |||||||||| Sbjct: 49698 agatcccggtgatcgacctgcggctcgccggcgaggcgcccggcgaggccgcgcggctgc 49639 Query: 122 gggacgcgtgcg-agcgcttgggctgcttccgcgtgtccggccacggcgtgcccgcggcg 180 | |||||| ||| |||| ||||||||||||||||||| |||||||||||||| || | Sbjct: 49638 gcgacgcg-gcgcggcgcctgggctgcttccgcgtgtcgggccacggcgtgccgcgggag 49580 Query: 181 ctccaggcggagatgaaggcctccgtgcgcgcgctcttcgacctccccgacgaagccaag 240 |||||||| | |||| |||| |||||||||| || ||||||||||||| ||| |||||| Sbjct: 49579 ctccaggccggcatgagggccgccgtgcgcgccctgttcgacctccccggcgacgccaag 49520 Query: 241 cgccgcaacacggacatcatcgccggcagcggctacgtcgcgcccagccccgccaacccg 300 ||||||||| | ||| ||||| ||||||||||||| | ||||| ||| ||||||||||| Sbjct: 49519 cgccgcaacgccgacgtcatccacggcagcggctacatggcgccgagcgccgccaacccg 49460 Query: 301 ctctacgaggccttcggcctcctggacgccgccgtccccgccgacgtcgacgccttctgc 360 || |||||||| ||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 49459 ctgtacgaggcgttcggcctctacgacgccgcgtcccccgccgacgtcgacgccttctgt 49400 Query: 361 gcgcgcctcgacgcgccgcctcacgccagg 390 | |||||||||||||||| ||||||||| Sbjct: 49399 tcctgcctcgacgcgccgccgcacgccagg 49370
>gb|AY110273.1| Zea mays CL5678_1 mRNA sequence Length = 763 Score = 54.0 bits (27), Expect = 4e-04 Identities = 65/75 (86%), Gaps = 2/75 (2%) Strand = Plus / Minus Query: 360 cgcgcgcctcgacgcgccgcctcacgccagggagaccgtcaaggcttacgccgaggcgat 419 |||||||||||| |||||||| || |||||||||||||||||| | ||||| ||| ||| Sbjct: 763 cgcgcgcctcga-gcgccgcc-caagccagggagaccgtcaagacctacgcggagaagat 706 Query: 420 gcacgagctgatcgt 434 |||||| ||||||| Sbjct: 705 gcacgacgtgatcgt 691
>ref|XM_475929.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1164 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 212 cgctcttcgacctccccgacgaagccaagcgccgcaac 249 ||||||||| ||||||| ||| ||||||||||||||| Sbjct: 200 cgctcttcgcgctccccgtcgacgccaagcgccgcaac 237
>gb|AF550679.1| Escherichia coli plasmid p1658/97, complete sequence Length = 125491 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 gtcgacgccttctgcgcgcgcctcga 371 |||||||| ||||||||||||||||| Sbjct: 50070 gtcgacgcgttctgcgcgcgcctcga 50095
>gb|AY378100.1| Klebsiella pneumoniae plasmid pLVPK, complete sequence Length = 219385 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 gtcgacgccttctgcgcgcgcctcga 371 |||||||| ||||||||||||||||| Sbjct: 54350 gtcgacgcgttctgcgcgcgcctcga 54375
>gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B10, complete sequence Length = 127304 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Minus Query: 212 cgctcttcgacctccccgacgaagccaagcgccgcaac 249 ||||||||| ||||||| ||| ||||||||||||||| Sbjct: 15691 cgctcttcgcgctccccgtcgacgccaagcgccgcaac 15654
>emb|CR728367.2|CNS0GOYD Tetraodon nigroviridis full-length cDNA Length = 1440 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 351 cgccttctgcgcgcgcctcgac 372 |||||||||||||||||||||| Sbjct: 449 cgccttctgcgcgcgcctcgac 428
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Minus Query: 212 cgctcttcgacctccccgacgaagccaagcgccgcaac 249 ||||||||| ||||||| ||| ||||||||||||||| Sbjct: 28487998 cgctcttcgcgctccccgtcgacgccaagcgccgcaac 28487961 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 325 gacgccgccgtccccgccgacgtcgacg 352 |||||||||||| ||||||||| ||||| Sbjct: 19640525 gacgccgccgtcgccgccgacgccgacg 19640552 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 293 ccaacccgctctacgaggccttcg 316 |||||||||||||| ||||||||| Sbjct: 11321263 ccaacccgctctacaaggccttcg 11321286
>dbj|AP006726.1| Klebsiella pneumoniae NTUH-K2044 plasmid pK2044 DNA, complete genome Length = 224152 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 gtcgacgccttctgcgcgcgcctcga 371 |||||||| ||||||||||||||||| Sbjct: 202757 gtcgacgcgttctgcgcgcgcctcga 202782
>gb|AY954696.1| Klebsiella sp. ZD112 VagD-like protein gene, complete cds Length = 756 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 346 gtcgacgccttctgcgcgcgcctcga 371 |||||||| ||||||||||||||||| Sbjct: 312 gtcgacgcgttctgcgcgcgcctcga 287
>dbj|AB097412.1| Triticum aestivum Wcor18 mRNA for cold regulated protein, complete cds Length = 784 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 318 cctcctggacgccgccgtccccgccg 343 ||||||||||||||||||| |||||| Sbjct: 389 cctcctggacgccgccgtcgccgccg 364
>emb|AJ421477.1|MDI421477 Methylobacterium dichloromethanicum mtdB gene, mchA gene, fae gene for Hypothetical protein, fae gene and ORF1-5, strain DM4 (DSM6343) Length = 7038 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 gatcccggtgatcgacctgcg 83 ||||||||||||||||||||| Sbjct: 6646 gatcccggtgatcgacctgcg 6626
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 349 gacgccttctgcgcgcgcctc 369 ||||||||||||||||||||| Sbjct: 4081419 gacgccttctgcgcgcgcctc 4081439
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 339 cgccgacgtcgacgccttctgcgcgcgcc 367 |||| ||||||||||| |||||||||||| Sbjct: 1808349 cgcccacgtcgacgccgtctgcgcgcgcc 1808321
>gb|AF032114.2| Methylobacterium extorquens mxbM gene, complete sequence; response regulator, sensor kinase (mxbD), formyltransferase/hydrolase complex Fhc subunit C (fhcC), formyltransferase/hydrolase complex Fhc subunit D (fhcD), formyltransferase/hydrolase complex Fhc subunit A (fhcA), formyltransferase/hydrolase complex Fhc subunit B (fhcB), methylene tetrahydromethanopterin dehydrogenase, methylene tetrahydromethanopterin cyclohydrolase (mch), and formaldehyde-activating enzyme (fae) genes, complete cds; and unknown genes Length = 16541 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 gatcccggtgatcgacctgcg 83 ||||||||||||||||||||| Sbjct: 15468 gatcccggtgatcgacctgcg 15448
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 tccccgccgacgtcgacgcct 355 ||||||||||||||||||||| Sbjct: 558930 tccccgccgacgtcgacgcct 558950
>gb|U27314.1|RLU27314 Rhizobium leguminosarum nitrogen fixation regulatory proteins FixL (fixL) and FixJ (fixJ) genes, complete cds Length = 2526 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 412 gaggcgatgcacgagctgatc 432 ||||||||||||||||||||| Sbjct: 1234 gaggcgatgcacgagctgatc 1254
>emb|AJ628421.2| Micromonospora olivasterospora fortimicin biosynthesis gene cluster, strain DSM 43868 Length = 47238 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 tgtccggccacggcgtgcccg 175 ||||||||||||||||||||| Sbjct: 13608 tgtccggccacggcgtgcccg 13628
>gb|AY549198.1| Streptomyces tubercidicus oxidoreductase (redLA1) gene, partial cds; and cytochrome P450 monooxygenase CYP107L3 (cypLA), O-methyltransferase (metLA1), O-methyltransferase (metLA2), and oxidoreductase (redLA2) genes, complete cds Length = 5427 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 gctcttcgacctccccgacg 232 |||||||||||||||||||| Sbjct: 2994 gctcttcgacctccccgacg 3013
>ref|XM_463586.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 325 gacgccgccgtccccgccgacgtcgacg 352 |||||||||| | ||||||||||||||| Sbjct: 28 gacgccgccgccgccgccgacgtcgacg 55
>gb|BT018872.1| Zea mays clone EL01N0563D01.d mRNA sequence Length = 1668 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 142 ggctgcttccgcgtgtccggccacggcg 169 ||||||||||||| ||||||| |||||| Sbjct: 232 ggctgcttccgcgcgtccggcgacggcg 259
>gb|AC149302.1| Solanum demissum chromosome 11 clone PGEC400L14 map MAP_LOC, complete sequence Length = 136874 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 cgcttgggctgcttccgcgt 155 |||||||||||||||||||| Sbjct: 35822 cgcttgggctgcttccgcgt 35803
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 cgcgcgcctcgacgcgccgc 379 |||||||||||||||||||| Sbjct: 102749 cgcgcgcctcgacgcgccgc 102768
>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11, complete sequence Length = 102567 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 325 gacgccgccgtccccgccgacgtcgacg 352 |||||||||||| ||||||||| ||||| Sbjct: 100424 gacgccgccgtcgccgccgacgccgacg 100451
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gacgcgccgcctcacgccag 389 |||||||||||||||||||| Sbjct: 809645 gacgcgccgcctcacgccag 809626
>gb|AC145273.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0055E23, complete sequence Length = 156572 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 293 ccaacccgctctacgaggccttcg 316 |||||||||||||| ||||||||| Sbjct: 46540 ccaacccgctctacaaggccttcg 46563
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 cgcgcgcctcgacgcgccgc 379 |||||||||||||||||||| Sbjct: 598572 cgcgcgcctcgacgcgccgc 598553
>gb|AC105319.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1657_H11, complete sequence Length = 98103 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 325 gacgccgccgtccccgccgacgtcgacg 352 |||||||||||| ||||||||| ||||| Sbjct: 5534 gacgccgccgtcgccgccgacgccgacg 5561
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atagacctgcggctcgccgt 20 |||||||||||||||||||| Sbjct: 66383 atagacctgcggctcgccgt 66402
>gb|AY337067.1| Uncultured sulfate-reducing bacterium clone M300255 dissimilatory sulfite reductase subunits alpha and beta (dsrAB) gene, partial sequence Length = 1304 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ccaggcggagatgaaggcct 202 |||||||||||||||||||| Sbjct: 21 ccaggcggagatgaaggcct 40
>gb|AY337054.1| Uncultured sulfate-reducing bacterium clone M306285 dissimilatory sulfite reductase subunits alpha and beta (dsrAB) gene, partial sequence Length = 1288 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ccaggcggagatgaaggcct 202 |||||||||||||||||||| Sbjct: 21 ccaggcggagatgaaggcct 40
>gb|DQ112205.1| Uncultured sulfate-reducing bacterium clone VHS040 dissimilatory sulfite reductase alpha subunit (dsrA) and dissimilatory sulfite reductase bata subunit (dsrB) genes, partial cds Length = 1838 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ccaggcggagatgaaggcct 202 |||||||||||||||||||| Sbjct: 552 ccaggcggagatgaaggcct 571
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 ctggacgccgccgtccccgc 341 |||||||||||||||||||| Sbjct: 4015680 ctggacgccgccgtccccgc 4015699 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 ctggacgccgccgtccccgc 341 |||||||||||||||||||| Sbjct: 274059 ctggacgccgccgtccccgc 274040
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 ggcgatgcacgagctgatcg 433 |||||||||||||||||||| Sbjct: 127896 ggcgatgcacgagctgatcg 127877
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 cgcgcgcctcgacgcgccgc 379 |||||||||||||||||||| Sbjct: 407097 cgcgcgcctcgacgcgccgc 407078
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 cgtccccgccgacgtcgacg 352 |||||||||||||||||||| Sbjct: 153570 cgtccccgccgacgtcgacg 153551
>emb|AJ505006.1|POL505006 Sorangium cellulosum spiG gene (partial), spiH gene, spiI gene, spiJ gene, spiK gene, spiL gene and spiZ gene Length = 48000 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 cgtccccgccgacgtcgacg 352 |||||||||||||||||||| Sbjct: 8531 cgtccccgccgacgtcgacg 8550
>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0497A05 Length = 130919 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 325 gacgccgccgtccccgccgacgtcgacg 352 |||||||||| | ||||||||||||||| Sbjct: 92087 gacgccgccgccgccgccgacgtcgacg 92114
>gb|AC150249.5| Uncultured bacterium zdt-14e13 clone zdt-14e13, complete sequence Length = 40893 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 356 tctgcgcgcgcctcgacgcgccgc 379 ||||||||||||| |||||||||| Sbjct: 24040 tctgcgcgcgcctggacgcgccgc 24017
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 gatcgacctgcggctcgccg 91 |||||||||||||||||||| Sbjct: 2716383 gatcgacctgcggctcgccg 2716402
>gb|AE011939.1| Xanthomonas axonopodis pv. citri str. 306, section 317 of 469 of the complete genome Length = 11203 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 atcccggtgatcgacctgcg 83 |||||||||||||||||||| Sbjct: 11027 atcccggtgatcgacctgcg 11008
>gb|AY885438.1| Uncultured sulfate-reducing bacterium clone FW-300-258 dissimilatory sulfite reductase subunits A and B (dsrAB) gene, partial sequence Length = 1276 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ccaggcggagatgaaggcct 202 |||||||||||||||||||| Sbjct: 18 ccaggcggagatgaaggcct 37
>gb|AY885436.1| Uncultured sulfate-reducing bacterium clone FW-005-008 dissimilatory sulfite reductase subunits A and B (dsrAB) gene, partial sequence Length = 1284 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ccaggcggagatgaaggcct 202 |||||||||||||||||||| Sbjct: 24 ccaggcggagatgaaggcct 43
>gb|AY885435.1| Uncultured sulfate-reducing bacterium clone FW-015-071 dissimilatory sulfite reductase subunits A and B (dsrAB) gene, partial sequence Length = 1274 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ccaggcggagatgaaggcct 202 |||||||||||||||||||| Sbjct: 21 ccaggcggagatgaaggcct 40
>gb|AY885434.1| Uncultured sulfate-reducing bacterium clone FW-005-220 dissimilatory sulfite reductase subunits A and B (dsrAB) gene, partial sequence Length = 1287 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ccaggcggagatgaaggcct 202 |||||||||||||||||||| Sbjct: 30 ccaggcggagatgaaggcct 49
>gb|AY885432.1| Uncultured sulfate-reducing bacterium clone FW-015-255 dissimilatory sulfite reductase subunits A and B (dsrAB) gene, partial sequence Length = 1250 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ccaggcggagatgaaggcct 202 |||||||||||||||||||| Sbjct: 36 ccaggcggagatgaaggcct 55
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 325 gacgccgccgtccccgccgacgtcgacg 352 |||||||||| | ||||||||||||||| Sbjct: 39537645 gacgccgccgccgccgccgacgtcgacg 39537672
>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456E05 Length = 173699 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 325 gacgccgccgtccccgccgacgtcgacg 352 |||||||||| | ||||||||||||||| Sbjct: 18601 gacgccgccgccgccgccgacgtcgacg 18628
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ggactcggcgcggctgcggg 124 |||||||||||||||||||| Sbjct: 7228191 ggactcggcgcggctgcggg 7228172
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cggccacggcgtgcccgcgg 178 |||||||||||||||||||| Sbjct: 4036281 cggccacggcgtgcccgcgg 4036300 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 atcccggtgatcgacctgcggctc 87 |||||||| ||||||||||||||| Sbjct: 1582736 atcccggtcatcgacctgcggctc 1582713 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 324 ggacgccgccgtccccgccgacgtcgac 351 ||||||||||| ||||||||||| |||| Sbjct: 819953 ggacgccgccgcccccgccgacgacgac 819926
>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1417F08 Length = 155536 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 325 gacgccgccgtccccgccgacgtcgacg 352 |||||||||| | ||||||||||||||| Sbjct: 112659 gacgccgccgccgccgccgacgtcgacg 112686
>dbj|AB112586.1| Streptomyces sp. WA46 genes for salicylate degradation related proteins, complete cds Length = 27521 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 aggactcggcgcggctgcgggacg 127 ||||| |||||||||||||||||| Sbjct: 8854 aggacccggcgcggctgcgggacg 8877
>dbj|AK067269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099J01, full insert sequence Length = 1446 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 325 gacgccgccgtccccgccgacgtcgacg 352 |||||||||| | ||||||||||||||| Sbjct: 152 gacgccgccgccgccgccgacgtcgacg 179
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 gacgccttctgcgcgcgcct 368 |||||||||||||||||||| Sbjct: 3331371 gacgccttctgcgcgcgcct 3331352
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 cgcgcgcctcgacgcgccgc 379 |||||||||||||||||||| Sbjct: 387714 cgcgcgcctcgacgcgccgc 387695
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 acgccttctgcgcgcgcctc 369 |||||||||||||||||||| Sbjct: 2235966 acgccttctgcgcgcgcctc 2235947 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,186,418 Number of Sequences: 3902068 Number of extensions: 2186418 Number of successful extensions: 54484 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51188 Number of HSP's gapped (non-prelim): 3296 length of query: 440 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 418 effective length of database: 17,147,199,772 effective search space: 7167529504696 effective search space used: 7167529504696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
