ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart61f01 |
|---|---|
| Clone Library Name | barley_pub |
>RPOA_MYCTU (P66701) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 347 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +3 Query: 114 IKINPAPKEAEHIAGFATP 170 I+I P+P EA+HIA FA P Sbjct: 232 IEIGPSPAEADHIASFALP 250
>RPOA_MYCPA (Q73S43) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 347 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +3 Query: 114 IKINPAPKEAEHIAGFATP 170 I+I P+P EA+HIA FA P Sbjct: 232 IEIGPSPAEADHIASFALP 250
>RPOA_MYCLE (Q9X798) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 347 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +3 Query: 114 IKINPAPKEAEHIAGFATP 170 I+I P+P EA+HIA FA P Sbjct: 232 IEIGPSPAEADHIASFALP 250
>RPOA_MYCBO (P66702) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 347 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +3 Query: 114 IKINPAPKEAEHIAGFATP 170 I+I P+P EA+HIA FA P Sbjct: 232 IEIGPSPAEADHIASFALP 250
>LPXB_XYLFT (Q87EI5) Lipid-A-disaccharide synthase (EC 2.4.1.182)| Length = 385 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +3 Query: 51 CFSSPTRIEPLATSFLLLRTQIKINPAPKEAEHIA 155 CF P ++ L +L L TQ++ N + + AE IA Sbjct: 345 CFKHPQKVTALQNRYLQLHTQLRRNASTRAAEAIA 379
>RL15_MYCGA (O52350) 50S ribosomal protein L15| Length = 147 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = -2 Query: 292 HVKRRRGRKKASALQRSIGRHTGGQANWKDQRGGRTNPGDDGVANP 155 H + GR S L ++ GR GQ K ++ GRT PG +G P Sbjct: 15 HKAKVVGRGHGSGLGKTSGR---GQKGQKARKSGRTRPGFEGGQTP 57
>SRBP1_HUMAN (P36956) Sterol regulatory element-binding protein 1 (SREBP-1)| (Sterol regulatory element-binding transcription factor 1) Length = 1147 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = +3 Query: 156 GFATPSSPGFVLPPL*SFQLAWPPVCRPIDRCKALAFFLPRRLFT 290 GF+T S PG PL LA PP P+ + +P++L T Sbjct: 171 GFSTGSPPGNTQQPLPGLPLASPPGVPPVSLHTQVQSVVPQQLLT 215
>RL15_VIBCH (Q9KP03) 50S ribosomal protein L15| Length = 144 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = -2 Query: 292 HVKRRRGRKKASALQRSIGRHTGGQANWKDQRGGRTNPGDDGVANP 155 H +R GR S L ++ GR GQ K + GG+ PG +G P Sbjct: 14 HAPKRLGRGVGSGLGKTGGRGHKGQ---KSRSGGKVRPGFEGGQMP 56
>ATL5C_ARATH (Q5EAE9) RING-H2 finger protein ATL5C precursor| Length = 407 Score = 28.9 bits (63), Expect = 3.1 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Frame = -2 Query: 292 HVKRRRGRKKASALQR-SIGRHTGGQANWKDQRGGRTNPGDDGVANPAMCSASFGA 128 H KRR G + QR +I R+ GG N GGR N G D ++ FGA Sbjct: 81 HCKRRNGSVYVNHPQRFAITRYGGGYYNGGGVVGGRKNSGIDRSVIESLPVFRFGA 136
>RPOA_NOCFA (Q5Z1K9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 352 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +3 Query: 114 IKINPAPKEAEHIAGFATP 170 I+I P+P EA+HIA F P Sbjct: 232 IEIGPSPAEADHIASFGLP 250
>RPOA_CORJK (Q4JTC2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 337 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/19 (52%), Positives = 16/19 (84%) Frame = +3 Query: 114 IKINPAPKEAEHIAGFATP 170 I+I P+P+E+EHIA ++ P Sbjct: 229 IEIGPSPQESEHIAAYSMP 247
>IF2_RALEJ (Q46ZP1) Translation initiation factor IF-2| Length = 966 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = -2 Query: 271 RKKASALQRSIGRHTGGQANWKDQ---RGGRTNPGDDGVAN 158 RKK S L ++ G +GG W+ RGGR DDG +N Sbjct: 334 RKKGSGL-KTRGDSSGGVGGWRGGPRGRGGRQQHADDGRSN 373
>RL15_VIBVY (Q7MPG9) 50S ribosomal protein L15| Length = 144 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = -2 Query: 292 HVKRRRGRKKASALQRSIGRHTGGQANWKDQRGGRTNPGDDGVANP 155 H +R GR S L ++ GR GQ K + GG+ PG +G P Sbjct: 14 HAPKRVGRGIGSGLGKTGGRGHKGQ---KSRSGGKVRPGFEGGQMP 56
>RL15_VIBVU (Q8DE59) 50S ribosomal protein L15| Length = 144 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = -2 Query: 292 HVKRRRGRKKASALQRSIGRHTGGQANWKDQRGGRTNPGDDGVANP 155 H +R GR S L ++ GR GQ K + GG+ PG +G P Sbjct: 14 HAPKRVGRGIGSGLGKTGGRGHKGQ---KSRSGGKVRPGFEGGQMP 56
>RL15_VIBPA (Q87SZ4) 50S ribosomal protein L15| Length = 144 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = -2 Query: 292 HVKRRRGRKKASALQRSIGRHTGGQANWKDQRGGRTNPGDDGVANP 155 H +R GR S L ++ GR GQ K + GG+ PG +G P Sbjct: 14 HAPKRVGRGIGSGLGKTGGRGHKGQ---KSRSGGKVRPGFEGGQMP 56
>IF2_RALSO (Q8XZV6) Translation initiation factor IF-2| Length = 964 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = -2 Query: 277 RGRKKASALQRSIGRHTGGQANWKDQRGGRTNPGDD 170 RG K+ R G GG W+ +GGR GDD Sbjct: 334 RGNKRGGLKTR--GDTGGGVDGWRGSKGGRNRHGDD 367
>ISCS_AZOVI (O31269) Cysteine desulfurase (EC 2.8.1.7) (NifS protein homolog)| Length = 403 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -2 Query: 181 PGDDGVANPAMCSASFGAGLILICVRRRRKEV 86 PG+DG+ PAM +A+ IL+ V E+ Sbjct: 125 PGEDGLITPAMVAAALREDTILVSVMHVNNEI 156
>YNR7_SCHPO (Q9USZ2) Hypothetical protein C11G11.07 in chromosome II| Length = 955 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 17/81 (20%) Frame = +3 Query: 99 LLRTQIKINPAPKEAEHIA----------GFATPSSPGFVLPPL*S-FQLAWPPVCRPID 245 +L Q+K+NP E E +A P SP L P+ FQ WP + R +D Sbjct: 603 ILLAQVKLNPTQAELEALADNIDIVTIFLSLVHPPSPAGELHPIVRLFQDIWPILSRTLD 662 Query: 246 R------CKALAFFLPRRLFT 290 C+ ++ L ++T Sbjct: 663 TFSDVLICERISKLLKNFIYT 683
>IF2B_PICTO (Q6L0E6) Translation initiation factor 2 beta subunit (eIF-2-beta)| (aIF2-beta) Length = 205 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/34 (29%), Positives = 20/34 (58%) Frame = +3 Query: 3 KTDINQNQGAHTICYYCFSSPTRIEPLATSFLLL 104 ++ +N+ + ICY C S T I+ + ++LL+ Sbjct: 90 QSKMNEYMATYVICYECKSPDTEIQKIGRTYLLV 123
>TWST1_PONPY (Q8MIB9) Twist-related protein 1| Length = 203 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/57 (31%), Positives = 22/57 (38%) Frame = -2 Query: 295 PHVKRRRGRKKASALQRSIGRHTGGQANWKDQRGGRTNPGDDGVANPAMCSASFGAG 125 P +R GRK+ S+ +RS G G GG PG SA G G Sbjct: 29 PPSGKRGGRKRRSSSRRSAGGGAGPGGAASGGVGGGDEPGSPAQGKRGKKSAGCGGG 85 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,991,669 Number of Sequences: 219361 Number of extensions: 962396 Number of successful extensions: 2833 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2763 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2833 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
