ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart61f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL138712.19| Human DNA sequence from clone RP11-502P18 on ch... 48 0.022
2gb|AC109614.9| Mus musculus chromosome 5, clone RP23-107M21, com... 48 0.022
3gb|AY751777.1| Scrophularia mottle virus putative movement prote... 42 1.4
4gb|AC084384.1| Mus musculus BAC clone RP23-24F24 from 15, comple... 42 1.4
5gb|AC020616.7| Mus musculus strain C57BL/6J clone RP23-3A24, com... 42 1.4
6emb|AL929421.7| Mouse DNA sequence from clone RP23-284N23 on chr... 42 1.4
7gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, ... 40 5.4
8gb|AY566580.1| Xanthomonas sp. PG-07 16S ribosomal RNA gene, par... 40 5.4
9gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 5.4
10ref|XM_463873.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.4
11gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 5.4
12gb|AY532552.1| Uncultured bacterium clone 1013-1-CG35 16S riboso... 40 5.4
13gb|AY510161.1| Bacterium D5 16S ribosomal RNA gene, partial sequ... 40 5.4
14gb|AC127525.8| Homo sapiens chromosome 17, clone RP13-551H18, co... 40 5.4
15ref|XM_663517.1| Cryptosporidium hominis TU502 serine/threonine ... 40 5.4
16gb|DQ106946.1| Uncultured bacterium clone RABC-B36 16S ribosomal... 40 5.4
17emb|AL031296.1|HS888M10 Human DNA sequence from clone RP5-888M10... 40 5.4
18gb|AC134407.6| Homo sapiens chromosome 17, clone RP11-855A2, com... 40 5.4
19emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete... 40 5.4
20emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 40 5.4
21emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, comple... 40 5.4
22emb|BX897696.12| Zebrafish DNA sequence from clone DKEY-111B14 i... 40 5.4
23gb|AF522929.1| Uncultured bacterium clone 7g9 16S ribosomal RNA ... 40 5.4
24gb|AF522927.1| Uncultured bacterium clone 7g5 16S ribosomal RNA ... 40 5.4
25emb|X95918.1|XARR494 X.albilineans 16S rRNA gene 40 5.4
26gb|AE005713.1| Caulobacter crescentus CB15 section 39 of 359 of ... 40 5.4
27gb|DQ413155.1| Thermomonas sp. EMB 79 16S ribosomal RNA gene, pa... 40 5.4
28dbj|AB184988.1| Uncultured bacterium gene for 16S rRNA, partial ... 40 5.4
29dbj|AK052729.1| Mus musculus 0 day neonate kidney cDNA, RIKEN fu... 40 5.4
30dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
31dbj|AB087755.1| Uncultured bacterium gene for 16S ribosomal RNA,... 40 5.4
32dbj|AB087753.1| Uncultured bacterium gene for 16S ribosomal RNA,... 40 5.4
33dbj|AB011557.1| Bacterium rN8 gene for 16S rRNA, partial sequence 40 5.4
34gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete ... 40 5.4
35dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
36dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
37emb|AJ619078.1| uncultured gamma proteobacterium partial 16S rRN... 40 5.4
38emb|AJ519986.1|TFU519986 Thermomonas fusca 16S rRNA gene, type s... 40 5.4
39emb|AJ519985.1|TFU519985 Thermomonas fusca 16S rRNA gene, strain... 40 5.4
40dbj|BS000201.1| Pan troglodytes chromosome 22 clone:PTB-047A24, ... 40 5.4
41dbj|AB101447.1| Xanthomonas axonopodis gene for 16S rRNA, comple... 40 5.4
42dbj|AB101446.1| Xanthomonas axonopodis gene for 16S rRNA, comple... 40 5.4
43dbj|AB101445.1| Xanthomonas axonopodis gene for 16S rRNA, comple... 40 5.4
44gb|AC104921.9| Mus musculus chromosome 7, clone RP23-474B13, com... 40 5.4
45dbj|AP001725.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.4
46gb|DQ211465.2| Uncultured gamma proteobacterium clone nsc115 16S... 40 5.4
47gb|DQ211458.2| Uncultured gamma proteobacterium clone nsc108 16S... 40 5.4
48gb|U51103.1|DFU51103 Denitrifying Fe-oxidizing bacteria 16S ... 40 5.4
49dbj|AP000689.1| Homo sapiens genomic DNA, chromosome 21q22.2, BA... 40 5.4
50dbj|AB003151.1| Homo sapiens DNA, chromosome 21q22.2, PAC clone ... 40 5.4 
>emb|AL138712.19| Human DNA sequence from clone RP11-502P18 on chromosome 13 Contains 3'
              end of novel gene similar to Drosophila CG11486,  and the
              3' end of the FLT1 gene for fms-related tyrosine kinase 1
              (vascular endothelial growth factor/vascular permeability
              factor receptor), complete sequence
          Length = 164519

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 189    cttcctcctctctgatccttccag 212
              ||||||||||||||||||||||||
Sbjct: 115680 cttcctcctctctgatccttccag 115703
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>gb|AC109614.9| Mus musculus chromosome 5, clone RP23-107M21, complete sequence
          Length = 194308

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 60    tccccaacacgaatcgaacctctc 83
             ||||||||||||||||||||||||
Sbjct: 56909 tccccaacacgaatcgaacctctc 56932
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>gb|AY751777.1| Scrophularia mottle virus putative movement protein, polyprotein, and
            coat protein genes, complete cds
          Length = 6206

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 191  tcctcctctctgatccttcca 211
            |||||||||||||||||||||
Sbjct: 3105 tcctcctctctgatccttcca 3125
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>gb|AC084384.1| Mus musculus BAC clone RP23-24F24 from 15, complete sequence
          Length = 208833

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 194   tcctctctgatccttccagtt 214
             |||||||||||||||||||||
Sbjct: 37654 tcctctctgatccttccagtt 37634
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>gb|AC020616.7| Mus musculus strain C57BL/6J clone RP23-3A24, complete sequence
          Length = 191243

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 39   atctgctactactgcttttcttccc 63
            ||||||||| |||||||||||||||
Sbjct: 5472 atctgctaccactgcttttcttccc 5496
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>emb|AL929421.7| Mouse DNA sequence from clone RP23-284N23 on chromosome 2, complete
             sequence
          Length = 102530

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 39    atctgctactactgcttttcttccc 63
             ||||||||| |||||||||||||||
Sbjct: 36054 atctgctaccactgcttttcttccc 36078
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>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence
          Length = 491611

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     atcagggggcgcacacgatc 41
              ||||||||||||||||||||
Sbjct: 118126 atcagggggcgcacacgatc 118145
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>gb|AY566580.1| Xanthomonas sp. PG-07 16S ribosomal RNA gene, partial sequence
          Length = 1409

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 405 actgcttttcttccccaaca 386
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    gccgccaccgcctcccatgc 316
              ||||||||||||||||||||
Sbjct: 844788 gccgccaccgcctcccatgc 844807
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>ref|XM_463873.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 345

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 gccgccaccgcctcccatgc 316
           ||||||||||||||||||||
Sbjct: 299 gccgccaccgcctcccatgc 280
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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    ttcgcgacgccatcatctcc 178
              ||||||||||||||||||||
Sbjct: 482726 ttcgcgacgccatcatctcc 482745
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>gb|AY532552.1| Uncultured bacterium clone 1013-1-CG35 16S ribosomal RNA gene,
           partial sequence
          Length = 1510

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 453 actgcttttcttccccaaca 434
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>gb|AY510161.1| Bacterium D5 16S ribosomal RNA gene, partial sequence
          Length = 717

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 49 actgcttttcttccccaaca 68
          ||||||||||||||||||||
Sbjct: 52 actgcttttcttccccaaca 33
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>gb|AC127525.8| Homo sapiens chromosome 17, clone RP13-551H18, complete sequence
          Length = 108860

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    aacttctttcctcctcctcc 105
             ||||||||||||||||||||
Sbjct: 10213 aacttctttcctcctcctcc 10232
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>ref|XM_663517.1| Cryptosporidium hominis TU502 serine/threonine protein kinase;
           possibly sporulation specific (Chro.70160) partial mRNA
          Length = 2451

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 86  aacttctttcctcctcctcc 105
           ||||||||||||||||||||
Sbjct: 701 aacttctttcctcctcctcc 682
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>gb|DQ106946.1| Uncultured bacterium clone RABC-B36 16S ribosomal RNA gene, partial
           sequence
          Length = 584

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 414 actgcttttcttccccaaca 395
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>emb|AL031296.1|HS888M10 Human DNA sequence from clone RP5-888M10 on chromosome 1p36.11-36.31
             Contains the 3' end of the VPS13D gene for vacuolar
             protein sorting 13D (yeast) and a novel gene, complete
             sequence
          Length = 124874

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    aacttctttcctcctcctcc 105
             ||||||||||||||||||||
Sbjct: 12720 aacttctttcctcctcctcc 12701
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>gb|AC134407.6| Homo sapiens chromosome 17, clone RP11-855A2, complete sequence
          Length = 199875

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     aacttctttcctcctcctcc 105
              ||||||||||||||||||||
Sbjct: 129193 aacttctttcctcctcctcc 129174
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>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 8       agacataaatcaaaatcagg 27
               ||||||||||||||||||||
Sbjct: 1383643 agacataaatcaaaatcagg 1383662
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>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 8       agacataaatcaaaatcagg 27
               ||||||||||||||||||||
Sbjct: 1370878 agacataaatcaaaatcagg 1370897
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>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 8       agacataaatcaaaatcagg 27
               ||||||||||||||||||||
Sbjct: 1405632 agacataaatcaaaatcagg 1405651
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>emb|BX897696.12| Zebrafish DNA sequence from clone DKEY-111B14 in linkage group 20,
             complete sequence
          Length = 175787

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   ggccgcccgtgtgccgaccg 239
             ||||||||||||||||||||
Sbjct: 28829 ggccgcccgtgtgccgaccg 28810
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>gb|AF522929.1| Uncultured bacterium clone 7g9 16S ribosomal RNA gene, partial
           sequence
          Length = 487

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 82  actgcttttcttccccaaca 101
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>gb|AF522927.1| Uncultured bacterium clone 7g5 16S ribosomal RNA gene, partial
           sequence
          Length = 493

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 423 actgcttttcttccccaaca 404
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>emb|X95918.1|XARR494 X.albilineans 16S rRNA gene
          Length = 1500

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 432 actgcttttcttccccaaca 413
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>gb|AE005713.1| Caulobacter crescentus CB15 section 39 of 359 of the complete genome
          Length = 10234

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 350  ccgtcccgtcacgcccgccgacgc 373
            |||||||| |||||||||||||||
Sbjct: 3073 ccgtcccgccacgcccgccgacgc 3096
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>gb|DQ413155.1| Thermomonas sp. EMB 79 16S ribosomal RNA gene, partial sequence
          Length = 1467

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 432 actgcttttcttccccaaca 413
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>dbj|AB184988.1| Uncultured bacterium gene for 16S rRNA, partial sequence,
           clone:TH-86
          Length = 920

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 452 actgcttttcttccccaaca 433
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>dbj|AK052729.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
            library, clone:D630037A06 product:hypothetical Homeobox
            domain containing protein, full insert sequence
          Length = 1773

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 86   aacttctttcctcctcctcc 105
            ||||||||||||||||||||
Sbjct: 1506 aacttctttcctcctcctcc 1487
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    gccgccaccgcctcccatgc 316
              ||||||||||||||||||||
Sbjct: 851607 gccgccaccgcctcccatgc 851626
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>dbj|AB087755.1| Uncultured bacterium gene for 16S ribosomal RNA, partial sequence,
           isolate:DGGE band R1-o
          Length = 194

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 119 actgcttttcttccccaaca 100
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>dbj|AB087753.1| Uncultured bacterium gene for 16S ribosomal RNA, partial sequence,
           isolate:DGGE band R1-m
          Length = 194

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 119 actgcttttcttccccaaca 100
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>dbj|AB011557.1| Bacterium rN8 gene for 16S rRNA, partial sequence
          Length = 194

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 119 actgcttttcttccccaaca 100
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>gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete sequence
          Length = 89352

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   tcctcctctctgatccttcc 210
             ||||||||||||||||||||
Sbjct: 83077 tcctcctctctgatccttcc 83058
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>dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1442_E05
          Length = 162407

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   gccgccaccgcctcccatgc 316
             ||||||||||||||||||||
Sbjct: 60815 gccgccaccgcctcccatgc 60834
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>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0036E06
          Length = 137926

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    gccgccaccgcctcccatgc 316
              ||||||||||||||||||||
Sbjct: 129738 gccgccaccgcctcccatgc 129757
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>emb|AJ619078.1| uncultured gamma proteobacterium partial 16S rRNA gene, clone
           MTBI36
          Length = 587

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 260 actgcttttcttccccaaca 241
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>emb|AJ519986.1|TFU519986 Thermomonas fusca 16S rRNA gene, type strain LMG 21737T
          Length = 1497

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 432 actgcttttcttccccaaca 413
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>emb|AJ519985.1|TFU519985 Thermomonas fusca 16S rRNA gene, strain LMG 21736
          Length = 1497

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 432 actgcttttcttccccaaca 413
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>dbj|BS000201.1| Pan troglodytes chromosome 22 clone:PTB-047A24, map 22, complete
              sequences
          Length = 165662

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 77     acctctcgcaacttctttcctcctcctc 104
              |||||||  |||||||||||||||||||
Sbjct: 155861 acctctctgaacttctttcctcctcctc 155834
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>dbj|AB101447.1| Xanthomonas axonopodis gene for 16S rRNA, complete sequence,
           strain:S53
          Length = 1540

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 455 actgcttttcttccccaaca 436
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>dbj|AB101446.1| Xanthomonas axonopodis gene for 16S rRNA, complete sequence,
           strain:S54
          Length = 1540

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 455 actgcttttcttccccaaca 436
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>dbj|AB101445.1| Xanthomonas axonopodis gene for 16S rRNA, complete sequence,
           strain:S11
          Length = 1501

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 451 actgcttttcttccccaaca 432
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>gb|AC104921.9| Mus musculus chromosome 7, clone RP23-474B13, complete sequence
          Length = 182487

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    caacttctttcctcctcctc 104
             ||||||||||||||||||||
Sbjct: 35780 caacttctttcctcctcctc 35761
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>dbj|AP001725.1| Homo sapiens genomic DNA, chromosome 21q, section 69/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 77    acctctcgcaacttctttcctcctcctc 104
             |||||||  |||||||||||||||||||
Sbjct: 59949 acctctctgaacttctttcctcctcctc 59922
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>gb|DQ211465.2| Uncultured gamma proteobacterium clone nsc115 16S ribosomal RNA
           gene, partial sequence
          Length = 813

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 466 actgcttttcttccccaaca 447
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>gb|DQ211458.2| Uncultured gamma proteobacterium clone nsc108 16S ribosomal RNA
           gene, partial sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 450 actgcttttcttccccaaca 431
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>gb|U51103.1|DFU51103 Denitrifying Fe-oxidizing bacteria 16S ribosomal RNA gene,
           complete sequence
          Length = 1480

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  actgcttttcttccccaaca 68
           ||||||||||||||||||||
Sbjct: 423 actgcttttcttccccaaca 404
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>dbj|AP000689.1| Homo sapiens genomic DNA, chromosome 21q22.2, BAC clone:KB795B7,
             CBR1-HLCS region
          Length = 126546

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 77    acctctcgcaacttctttcctcctcctc 104
             |||||||  |||||||||||||||||||
Sbjct: 70938 acctctctgaacttctttcctcctcctc 70911
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>dbj|AB003151.1| Homo sapiens DNA, chromosome 21q22.2, PAC clone 25P16 complete sequence,
              encoding carbonyl reductase and carbonyl reductase 3
              (complete cds)
          Length = 170529

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 77     acctctcgcaacttctttcctcctcctc 104
              |||||||  |||||||||||||||||||
Sbjct: 148961 acctctctgaacttctttcctcctcctc 148934


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,574,396
Number of Sequences: 3902068
Number of extensions: 4574396
Number of successful extensions: 96408
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96248
Number of HSP's gapped (non-prelim): 160
length of query: 401
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 379
effective length of database: 17,147,199,772
effective search space: 6498788713588
effective search space used: 6498788713588
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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