Clone Name | bart61e12 |
---|---|
Clone Library Name | barley_pub |
>gb|AY326952.1| Triticum aestivum putative plasma membrane Na+/H+ antiporter mRNA, complete cds Length = 3429 Score = 165 bits (83), Expect = 4e-38 Identities = 119/131 (90%) Strand = Plus / Plus Query: 1 cggcctcgagtacgggaccaagcttggcctcggcaagctcggagccggcatccgcatctg 60 |||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||||| Sbjct: 153 cggcctagagtacgggaccaagcatggcctgggcaagctcggagccggcatccgtatctg 212 Query: 61 ggccggcataaatcccgatctcctcctgggcggcttcctccccgcactcctcttcgagag 120 | | | ||||||||| |||||||| |||| || |||||||||||| |||||||||||||| Sbjct: 213 gtctgccataaatcctgatctccttctggccgtcttcctccccgccctcctcttcgagag 272 Query: 121 ctccttctcca 131 ||||||||||| Sbjct: 273 ctccttctcca 283
>gb|AY657495.1| Synthetic construct Peudomonas aeruginosa clone FLH040548.01F PA0655 gene, partial cds Length = 648 Score = 44.1 bits (22), Expect = 0.100 Identities = 25/26 (96%) Strand = Plus / Minus Query: 76 cgatctcctcctgggcggcttcctcc 101 |||||||||||| ||||||||||||| Sbjct: 286 cgatctcctcctcggcggcttcctcc 261
>gb|AE004500.1| Pseudomonas aeruginosa PAO1, section 61 of 529 of the complete genome Length = 11849 Score = 44.1 bits (22), Expect = 0.100 Identities = 25/26 (96%) Strand = Plus / Plus Query: 76 cgatctcctcctgggcggcttcctcc 101 |||||||||||| ||||||||||||| Sbjct: 7499 cgatctcctcctcggcggcttcctcc 7524
>ref|XM_745260.1| Aspergillus fumigatus Af293 AP-1 adaptor complex subunit gamma (Afu1g06030) partial mRNA Length = 2412 Score = 42.1 bits (21), Expect = 0.39 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 cggagccggcatccgcatctg 60 ||||||||||||||||||||| Sbjct: 1991 cggagccggcatccgcatctg 2011
>gb|AY328087.1| Oryza sativa (japonica cultivar-group) putative Na+/H+ antiporter (NHA1) mRNA, complete cds Length = 3736 Score = 40.1 bits (20), Expect = 1.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 32 ggcaagctcggagccggcatccgcatctgggc 63 ||||| |||||||||||||| || |||||||| Sbjct: 322 ggcaaactcggagccggcattcgtatctgggc 353
>gb|AE012041.1| Xanthomonas axonopodis pv. citri str. 306, section 419 of 469 of the complete genome Length = 12145 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 gcttggcctcggcaagctcg 41 |||||||||||||||||||| Sbjct: 3546 gcttggcctcggcaagctcg 3527
>gb|AY785147.1| Oryza sativa (japonica cultivar-group) Na+/H+ antiporter (SOS1) mRNA, complete cds Length = 3660 Score = 40.1 bits (20), Expect = 1.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 32 ggcaagctcggagccggcatccgcatctgggc 63 ||||| |||||||||||||| || |||||||| Sbjct: 180 ggcaaactcggagccggcattcgtatctgggc 211
>ref|NM_192914.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3006 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 cctcctgggcggcttcctc 100 ||||||||||||||||||| Sbjct: 1348 cctcctgggcggcttcctc 1330
>gb|AC134053.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0005H02, complete sequence Length = 144882 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 cctcctgggcggcttcctc 100 ||||||||||||||||||| Sbjct: 36952 cctcctgggcggcttcctc 36970
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 cctcctgggcggcttcctc 100 ||||||||||||||||||| Sbjct: 263675 cctcctgggcggcttcctc 263693
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 gatctcctcctgggcggct 95 ||||||||||||||||||| Sbjct: 1655178 gatctcctcctgggcggct 1655196
>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0080O10, from chromosome 3, complete sequence Length = 127917 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 cctcctgggcggcttcctc 100 ||||||||||||||||||| Sbjct: 100742 cctcctgggcggcttcctc 100760
>gb|AE012147.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 55 of 460 of the complete genome Length = 12236 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 ggcatccgcatctgggccg 65 ||||||||||||||||||| Sbjct: 8039 ggcatccgcatctgggccg 8021
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 ggcatccgcatctgggccg 65 ||||||||||||||||||| Sbjct: 607857 ggcatccgcatctgggccg 607839
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 cctcctgggcggcttcctc 100 ||||||||||||||||||| Sbjct: 19462303 cctcctgggcggcttcctc 19462321
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 cctcctgggcggcttcctc 100 ||||||||||||||||||| Sbjct: 263675 cctcctgggcggcttcctc 263693
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 cctcctgggcggcttcctc 100 ||||||||||||||||||| Sbjct: 25105395 cctcctgggcggcttcctc 25105413
>dbj|AP002839.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0688A04 Length = 143969 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 cctcctgggcggcttcctc 100 ||||||||||||||||||| Sbjct: 105003 cctcctgggcggcttcctc 105021
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 cctcctgggcggcttcctc 100 ||||||||||||||||||| Sbjct: 19621849 cctcctgggcggcttcctc 19621867 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 709,255 Number of Sequences: 3902068 Number of extensions: 709255 Number of successful extensions: 49128 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48898 Number of HSP's gapped (non-prelim): 230 length of query: 131 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 110 effective length of database: 17,151,101,840 effective search space: 1886621202400 effective search space used: 1886621202400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)