ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart61e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY326952.1| Triticum aestivum putative plasma membrane Na+/H+... 165 4e-38
2gb|AY657495.1| Synthetic construct Peudomonas aeruginosa clone F... 44 0.100
3gb|AE004500.1| Pseudomonas aeruginosa PAO1, section 61 of 529 of... 44 0.100
4ref|XM_745260.1| Aspergillus fumigatus Af293 AP-1 adaptor comple... 42 0.39
5gb|AY328087.1| Oryza sativa (japonica cultivar-group) putative N... 40 1.6
6gb|AE012041.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 1.6
7gb|AY785147.1| Oryza sativa (japonica cultivar-group) Na+/H+ ant... 40 1.6
8ref|NM_192914.1| Oryza sativa (japonica cultivar-group), predic... 38 6.2
9gb|AC134053.4| Oryza sativa (japonica cultivar-group) chromosome... 38 6.2
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 6.2
11gb|CP000088.1| Thermobifida fusca YX, complete genome 38 6.2
12gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare str... 38 6.2
13gb|AE012147.1| Xanthomonas campestris pv. campestris str. ATCC 3... 38 6.2
14gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 38 6.2
15dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
18dbj|AP002839.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 6.2

>gb|AY326952.1| Triticum aestivum putative plasma membrane Na+/H+ antiporter mRNA,
           complete cds
          Length = 3429

 Score =  165 bits (83), Expect = 4e-38
 Identities = 119/131 (90%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggcctcgagtacgggaccaagcttggcctcggcaagctcggagccggcatccgcatctg 60
           |||||| |||||||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 153 cggcctagagtacgggaccaagcatggcctgggcaagctcggagccggcatccgtatctg 212

                                                                       
Query: 61  ggccggcataaatcccgatctcctcctgggcggcttcctccccgcactcctcttcgagag 120
           | | | ||||||||| |||||||| |||| || |||||||||||| ||||||||||||||
Sbjct: 213 gtctgccataaatcctgatctccttctggccgtcttcctccccgccctcctcttcgagag 272

                      
Query: 121 ctccttctcca 131
           |||||||||||
Sbjct: 273 ctccttctcca 283



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>gb|AY657495.1| Synthetic construct Peudomonas aeruginosa clone FLH040548.01F
           PA0655 gene, partial cds
          Length = 648

 Score = 44.1 bits (22), Expect = 0.100
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 76  cgatctcctcctgggcggcttcctcc 101
           |||||||||||| |||||||||||||
Sbjct: 286 cgatctcctcctcggcggcttcctcc 261



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>gb|AE004500.1| Pseudomonas aeruginosa PAO1, section 61 of 529 of the complete genome
          Length = 11849

 Score = 44.1 bits (22), Expect = 0.100
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 76   cgatctcctcctgggcggcttcctcc 101
            |||||||||||| |||||||||||||
Sbjct: 7499 cgatctcctcctcggcggcttcctcc 7524



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>ref|XM_745260.1| Aspergillus fumigatus Af293 AP-1 adaptor complex subunit gamma
            (Afu1g06030) partial mRNA
          Length = 2412

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 40   cggagccggcatccgcatctg 60
            |||||||||||||||||||||
Sbjct: 1991 cggagccggcatccgcatctg 2011



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>gb|AY328087.1| Oryza sativa (japonica cultivar-group) putative Na+/H+ antiporter
           (NHA1) mRNA, complete cds
          Length = 3736

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 32  ggcaagctcggagccggcatccgcatctgggc 63
           ||||| |||||||||||||| || ||||||||
Sbjct: 322 ggcaaactcggagccggcattcgtatctgggc 353



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>gb|AE012041.1| Xanthomonas axonopodis pv. citri str. 306,  section 419 of 469 of the
            complete genome
          Length = 12145

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 22   gcttggcctcggcaagctcg 41
            ||||||||||||||||||||
Sbjct: 3546 gcttggcctcggcaagctcg 3527



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>gb|AY785147.1| Oryza sativa (japonica cultivar-group) Na+/H+ antiporter (SOS1)
           mRNA, complete cds
          Length = 3660

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 32  ggcaagctcggagccggcatccgcatctgggc 63
           ||||| |||||||||||||| || ||||||||
Sbjct: 180 ggcaaactcggagccggcattcgtatctgggc 211



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>ref|NM_192914.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3006

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 82   cctcctgggcggcttcctc 100
            |||||||||||||||||||
Sbjct: 1348 cctcctgggcggcttcctc 1330



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>gb|AC134053.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0005H02, complete sequence
          Length = 144882

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 82    cctcctgggcggcttcctc 100
             |||||||||||||||||||
Sbjct: 36952 cctcctgggcggcttcctc 36970



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 82     cctcctgggcggcttcctc 100
              |||||||||||||||||||
Sbjct: 263675 cctcctgggcggcttcctc 263693



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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 77      gatctcctcctgggcggct 95
               |||||||||||||||||||
Sbjct: 1655178 gatctcctcctgggcggct 1655196



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>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0080O10, from chromosome 3, complete sequence
          Length = 127917

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 82     cctcctgggcggcttcctc 100
              |||||||||||||||||||
Sbjct: 100742 cctcctgggcggcttcctc 100760



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>gb|AE012147.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 55 of
            460 of the complete genome
          Length = 12236

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 47   ggcatccgcatctgggccg 65
            |||||||||||||||||||
Sbjct: 8039 ggcatccgcatctgggccg 8021



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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     ggcatccgcatctgggccg 65
              |||||||||||||||||||
Sbjct: 607857 ggcatccgcatctgggccg 607839



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 82       cctcctgggcggcttcctc 100
                |||||||||||||||||||
Sbjct: 19462303 cctcctgggcggcttcctc 19462321



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 82     cctcctgggcggcttcctc 100
              |||||||||||||||||||
Sbjct: 263675 cctcctgggcggcttcctc 263693



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 82       cctcctgggcggcttcctc 100
                |||||||||||||||||||
Sbjct: 25105395 cctcctgggcggcttcctc 25105413



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>dbj|AP002839.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0688A04
          Length = 143969

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 82     cctcctgggcggcttcctc 100
              |||||||||||||||||||
Sbjct: 105003 cctcctgggcggcttcctc 105021



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 82       cctcctgggcggcttcctc 100
                |||||||||||||||||||
Sbjct: 19621849 cctcctgggcggcttcctc 19621867


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 709,255
Number of Sequences: 3902068
Number of extensions: 709255
Number of successful extensions: 49128
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48898
Number of HSP's gapped (non-prelim): 230
length of query: 131
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 110
effective length of database: 17,151,101,840
effective search space: 1886621202400
effective search space used: 1886621202400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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