ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart61e05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463235.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1482 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 395 gtgaaggaggacgggcacgtgtactcgctcgccgcggccggggac 439 ||||||||||||||||||||||||||||| || ||||| |||||| Sbjct: 310 gtgaaggaggacgggcacgtgtactcgctggcggcggcgggggac 354
>gb|AC091246.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0002I03 map E1419S, complete sequence Length = 150945 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 395 gtgaaggaggacgggcacgtgtactcgctcgccgcggccggggac 439 ||||||||||||||||||||||||||||| || ||||| |||||| Sbjct: 37176 gtgaaggaggacgggcacgtgtactcgctggcggcggcgggggac 37220
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 395 gtgaaggaggacgggcacgtgtactcgctcgccgcggccggggac 439 ||||||||||||||||||||||||||||| || ||||| |||||| Sbjct: 23589093 gtgaaggaggacgggcacgtgtactcgctggcggcggcgggggac 23589137 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 ccggcggtggcggcggccaa 219 |||||||||||||||||||| Sbjct: 21509581 ccggcggtggcggcggccaa 21509600
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 395 gtgaaggaggacgggcacgtgtactcgctcgccgcggccggggac 439 ||||||||||||||||||||||||||||| || ||||| |||||| Sbjct: 23582121 gtgaaggaggacgggcacgtgtactcgctggcggcggcgggggac 23582165 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 ccggcggtggcggcggccaa 219 |||||||||||||||||||| Sbjct: 21502610 ccggcggtggcggcggccaa 21502629
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 373 gacggggctccttgggtcgttcgtgaaggaggacgggcacgtgtactcgctcgccgcggc 432 ||||||| | || |||||| | ||||||||||||||||| || |||||||| |||||||| Sbjct: 24949382 gacggggttgctcgggtcgctggtgaaggaggacgggcatgtctactcgctagccgcggc 24949441 Query: 433 cgggga 438 ||||| Sbjct: 24949442 ggggga 24949447 Score = 60.0 bits (30), Expect = 6e-06 Identities = 56/64 (87%), Gaps = 3/64 (4%) Strand = Plus / Plus Query: 156 gcatgaggaaccacaagaagttgctgcagtttctgcggc---cggacccggcggtggcgg 212 ||||| |||| |||||||||||||||||||||||| ||| ||||| |||| ||||||| Sbjct: 24949135 gcatggggaatcacaagaagttgctgcagtttctgaggcccgcggacacggccgtggcgg 24949194 Query: 213 cggc 216 |||| Sbjct: 24949195 cggc 24949198 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 acccggcggtggcggcggcc 217 |||||||||||||||||||| Sbjct: 6656466 acccggcggtggcggcggcc 6656485
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 373 gacggggctccttgggtcgttcgtgaaggaggacgggcacgtgtactcgctcgccgcggc 432 ||||||| | || |||||| | ||||||||||||||||| || |||||||| |||||||| Sbjct: 24877588 gacggggttgctcgggtcgctggtgaaggaggacgggcatgtctactcgctagccgcggc 24877647 Query: 433 cgggga 438 ||||| Sbjct: 24877648 ggggga 24877653 Score = 60.0 bits (30), Expect = 6e-06 Identities = 56/64 (87%), Gaps = 3/64 (4%) Strand = Plus / Plus Query: 156 gcatgaggaaccacaagaagttgctgcagtttctgcggc---cggacccggcggtggcgg 212 ||||| |||| |||||||||||||||||||||||| ||| ||||| |||| ||||||| Sbjct: 24877341 gcatggggaatcacaagaagttgctgcagtttctgaggcccgcggacacggccgtggcgg 24877400 Query: 213 cggc 216 |||| Sbjct: 24877401 cggc 24877404 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 acccggcggtggcggcggcc 217 |||||||||||||||||||| Sbjct: 6656341 acccggcggtggcggcggcc 6656360
>emb|AL831797.4|CNS08CAA Oryza sativa chromosome 12, . BAC OSJNBa0010M16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132741 Score = 60.0 bits (30), Expect = 6e-06 Identities = 56/64 (87%), Gaps = 3/64 (4%) Strand = Plus / Minus Query: 156 gcatgaggaaccacaagaagttgctgcagtttctgcggc---cggacccggcggtggcgg 212 ||||| |||| |||||||||||||||||||||||| ||| ||||| |||| ||||||| Sbjct: 15733 gcatggggaatcacaagaagttgctgcagtttctgaggcccgcggacacggccgtggcgg 15674 Query: 213 cggc 216 |||| Sbjct: 15673 cggc 15670 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 373 gacggggctccttgggtcgttcgtgaaggaggacgggcacgtgtactcgctcgccgcggc 432 ||||||| | || |||||| | ||||||||||||||||| || |||||||| |||||||| Sbjct: 15486 gacggggttgctcgggtcgctggtgaaggaggacgggcatgtctactcgctagccgcggc 15427 Query: 433 cgggga 438 ||||| Sbjct: 15426 ggggga 15421
>gb|DQ013294.1| Polyangium cellulosum strain So ce12 disorazole biosynthesis gene cluster, complete sequence Length = 84868 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Minus Query: 334 cggcgccggggcggcgctgtcggccggcgcggcg 367 ||||||||| || |||||| |||||||||||||| Sbjct: 28909 cggcgccggcgccgcgctggcggccggcgcggcg 28876
>ref|XM_987859.1| PREDICTED: Mus musculus hypothetical protein LOC671576 (LOC671576), mRNA Length = 579 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 195 cggacccggcggtggcggcggc 216 |||||||||||||||||||||| Sbjct: 467 cggacccggcggtggcggcggc 488
>ref|XM_127051.7| PREDICTED: Mus musculus Son of sevenless homolog 2 (Drosophila) (Sos2), mRNA Length = 6198 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 195 cggacccggcggtggcggcggc 216 |||||||||||||||||||||| Sbjct: 467 cggacccggcggtggcggcggc 488
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 334 cggcgccggggcggcgctgtcggccg 359 ||||||||||||||| |||||||||| Sbjct: 174158 cggcgccggggcggcactgtcggccg 174133
>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14 Length = 347894 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 334 cggcgccggggcggcgctgtcggccg 359 ||||||||||||||| |||||||||| Sbjct: 119153 cggcgccggggcggcactgtcggccg 119178
>emb|AJ874112.1| Polyangium cellulosum disA gene, disB gene, disC gene, disD gene, ORF1, ORF2, ORF3, ORF4, ORF5, ORF6, ORF7, ORF8, ORF9, ORF10, ORF11, ORF12, ORF13, ORF14, ORF15, ORF16, ORF17, ORF18 and ORF19 Length = 86080 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Minus Query: 334 cggcgccggggcggcgctgtcggccggcgcggcg 367 ||||||||| || |||||| |||||||||||||| Sbjct: 28827 cggcgccggcgccgcgctggcggccggcgcggcg 28794
>gb|AC141560.4| Mus musculus BAC clone RP23-425A5 from 12, complete sequence Length = 196665 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 195 cggacccggcggtggcggcggc 216 |||||||||||||||||||||| Sbjct: 40657 cggacccggcggtggcggcggc 40636
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 343 ggcggcgctgtcggccggcgc 363 ||||||||||||||||||||| Sbjct: 1425492 ggcggcgctgtcggccggcgc 1425472
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 354 cggccggcgcggcggatgagacggg 378 ||||||||| ||||||||||||||| Sbjct: 1374366 cggccggcgaggcggatgagacggg 1374342 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 354 cggccggcgcggcggatgagacggg 378 ||||||||| ||||||||||||||| Sbjct: 1373952 cggccggcgaggcggatgagacggg 1373928
>gb|AE012276.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 184 of 460 of the complete genome Length = 11910 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 202 ggcggtggcggcggccaacga 222 ||||||||||||||||||||| Sbjct: 10312 ggcggtggcggcggccaacga 10332
>ref|XM_940609.1| PREDICTED: Homo sapiens similar to CG4502-PA (FLJ25076), mRNA Length = 4199 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 192 ggccggacccggcggtggcggcggc 216 |||||| |||||||||||||||||| Sbjct: 68 ggccgggcccggcggtggcggcggc 92
>ref|XM_059689.5| PREDICTED: Homo sapiens similar to CG4502-PA (FLJ25076), mRNA Length = 4406 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 192 ggccggacccggcggtggcggcggc 216 |||||| |||||||||||||||||| Sbjct: 275 ggccgggcccggcggtggcggcggc 299
>gb|AC093307.5| Homo sapiens chromosome 5 clone RP11-810C16, complete sequence Length = 176199 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 192 ggccggacccggcggtggcggcggc 216 |||||| |||||||||||||||||| Sbjct: 120406 ggccgggcccggcggtggcggcggc 120430
>dbj|AB188494.1| Homo sapiens mRNA, clone: TH049G03 Length = 2373 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 192 ggccggacccggcggtggcggcggc 216 |||||| |||||||||||||||||| Sbjct: 553 ggccgggcccggcggtggcggcggc 577
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 gttcgtgaaggaggacgggca 411 ||||||||||||||||||||| Sbjct: 3248091 gttcgtgaaggaggacgggca 3248111
>gb|M92914.1|DROMASTM Drosophila virilis mastermind gene, complete cds Length = 5650 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 ggacccggcggtggcggcggc 216 ||||||||||||||||||||| Sbjct: 4792 ggacccggcggtggcggcggc 4812
>emb|AL358788.17| Human DNA sequence from clone RP11-466J21 on chromosome 1 Contains the 5' UTR of a novel gene (KIAA0478), complete sequence Length = 76982 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 40 cactctcggttccttccttctcccc 64 ||||||||||| ||||||||||||| Sbjct: 7359 cactctcggtttcttccttctcccc 7335
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 201 cggcggtggcggcggccaacg 221 ||||||||||||||||||||| Sbjct: 6674546 cggcggtggcggcggccaacg 6674526
>gb|M69036.1|AFAPHBHI Alcaligenes eutrophus protein H (phbH) and protein I (phbI) genes, complete cds Length = 4501 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 337 cgccggggcggcgctgtcggccggcgcgg 365 |||||| ||||||||| |||||||||||| Sbjct: 2246 cgccggcgcggcgctggcggccggcgcgg 2274
>ref|NM_127967.3| Arabidopsis thaliana RNA binding AT2G24050 mRNA, complete cds Length = 2701 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gacccggcggtggcggcggc 216 |||||||||||||||||||| Sbjct: 220 gacccggcggtggcggcggc 239
>ref|XM_481776.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2727 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 gaagttgctgcagtttctgc 191 |||||||||||||||||||| Sbjct: 1437 gaagttgctgcagtttctgc 1456
>ref|XM_481775.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2766 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 gaagttgctgcagtttctgc 191 |||||||||||||||||||| Sbjct: 1387 gaagttgctgcagtttctgc 1406
>ref|XM_481652.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1734 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 201 cggcggtggcggcggccaacgacg 224 |||||| ||||||||||||||||| Sbjct: 118 cggcggcggcggcggccaacgacg 95
>gb|DQ214652.1| Taeniopygia guttata clone 0063P0007C03 nucleotide-binding protein 1 (NBP 1) variant 2-like mRNA, complete sequence Length = 1180 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 ggccggacccggcggtggcggcgg 215 ||||||||||||||| |||||||| Sbjct: 199 ggccggacccggcggaggcggcgg 222
>gb|DQ214651.1| Taeniopygia guttata clone 0058P0051A05 nucleotide-binding protein 1 (NBP 1) variant 1-like mRNA, complete sequence Length = 1099 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 ggccggacccggcggtggcggcgg 215 ||||||||||||||| |||||||| Sbjct: 126 ggccggacccggcggaggcggcgg 149
>gb|AC135502.4| Oryza sativa chromosome 3 BAC OSJNBb0085A04 genomic sequence, complete sequence Length = 132292 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 ccggcggtggcggcggccaa 219 |||||||||||||||||||| Sbjct: 14475 ccggcggtggcggcggccaa 14494
>ref|XM_366865.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG02941.4) partial mRNA Length = 1572 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gacccggcggtggcggcggc 216 |||||||||||||||||||| Sbjct: 1348 gacccggcggtggcggcggc 1367
>ref|XM_960427.1| Neurospora crassa OR74A hypothetical protein (NCU01889.1) partial mRNA Length = 1074 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 gccggacccggcggtggcggcggc 216 ||||| |||||||||||||||||| Sbjct: 57 gccgggcccggcggtggcggcggc 34
>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence Length = 204120 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 cccggcggtggcggcggcca 218 |||||||||||||||||||| Sbjct: 66018 cccggcggtggcggcggcca 66037
>ref|XM_329078.1| Neurospora crassa OR74A hypothetical protein (NCU01889.1) partial mRNA Length = 1074 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 gccggacccggcggtggcggcggc 216 ||||| |||||||||||||||||| Sbjct: 57 gccgggcccggcggtggcggcggc 34
>gb|AC156577.3| Ornithorhynchus anatinus BAC clone OABb-470C16 from chromosome unknown, complete sequence Length = 153725 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 gccggggcggcgctgtcggccggc 361 ||||||||||||||| |||||||| Sbjct: 21204 gccggggcggcgctgccggccggc 21227
>gb|AY837846.1| Bifidobacterium animalis subsp. animalis ATCC 25527 ctA, ClpB (clpB), and FaaH (faaH) genes, complete cds Length = 5198 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 266 gcgagcacgtcggccacggcgtcc 289 |||||||||||| ||||||||||| Sbjct: 987 gcgagcacgtcgtccacggcgtcc 964
>ref|XM_983182.1| PREDICTED: Mus musculus hypothetical LOC625734 (LOC625734), mRNA Length = 708 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gctgcagtttctgcggccgg 197 |||||||||||||||||||| Sbjct: 508 gctgcagtttctgcggccgg 489
>ref|XM_531679.2| PREDICTED: Canis familiaris hypothetical LOC474449 (LOC474449), mRNA Length = 5982 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 341 ggggcggcgctgtcggccggcgcggcgg 368 |||||||||||||||| ||| ||||||| Sbjct: 202 ggggcggcgctgtcgggcggggcggcgg 229
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 cgcgagcacgtcggccacgg 284 |||||||||||||||||||| Sbjct: 888829 cgcgagcacgtcggccacgg 888848
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 tgccttctcccacgaccagc 259 |||||||||||||||||||| Sbjct: 492547 tgccttctcccacgaccagc 492528
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 ggcgctgtcggccggcgcgg 365 |||||||||||||||||||| Sbjct: 3538852 ggcgctgtcggccggcgcgg 3538871 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 cgctgtcggccggcgcggcg 367 |||||||||||||||||||| Sbjct: 642385 cgctgtcggccggcgcggcg 642404
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 ggcggcgctgtcggccggcg 362 |||||||||||||||||||| Sbjct: 134093 ggcggcgctgtcggccggcg 134074
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 cacggcgtccccgtcgccct 299 |||||||||||||||||||| Sbjct: 216897 cacggcgtccccgtcgccct 216916
>emb|AL669999.1|NCB21D9 Neurospora crassa DNA linkage group II BAC clone B21D9 Length = 71024 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 cgccgtgggtgagcctcccg 328 |||||||||||||||||||| Sbjct: 48358 cgccgtgggtgagcctcccg 48377
>gb|AF537129.1| Penicillium marneffei catalase/peroxidase (CPE1) mRNA, complete cds Length = 2490 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cggcggtggcggcggccaac 220 |||||||||||||||||||| Sbjct: 395 cggcggtggcggcggccaac 414
>gb|AC154716.3| Mus musculus BAC clone RP24-362G2 from chromosome 16, complete sequence Length = 178456 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 tgaaaacctttcttcttccacgaa 27 ||||||| |||||||||||||||| Sbjct: 177259 tgaaaacttttcttcttccacgaa 177236
>gb|AC158143.6| Mus musculus chromosome 5, clone RP23-409I5, complete sequence Length = 191873 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gctgcagtttctgcggccgg 197 |||||||||||||||||||| Sbjct: 61210 gctgcagtttctgcggccgg 61191
>dbj|AB243405.1| Streptomyces albulus chloramphenicol resistance protein, putative membrane protein, putative D-amino acid oxidase (dao), putative carboxypeptidase, putative X-Pro dipeptidyl-peptidase, epsilon-poly-L-lysine-degrading enzyme (pld), hypothetical protein, hypothetical protein, hypothetical protein genes, partial and complete cds Length = 11723 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gccggacccggcggtggcgg 212 |||||||||||||||||||| Sbjct: 3748 gccggacccggcggtggcgg 3767
>gb|AC005170.3| Arabidopsis thaliana chromosome 2 clone T29E15 map CIC06C07, complete sequence Length = 108056 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 gacccggcggtggcggcggc 216 |||||||||||||||||||| Sbjct: 91511 gacccggcggtggcggcggc 91492
>gb|AY062494.1| Arabidopsis thaliana putative eukaryotic initiation factor 4, eIF4 (At2g24050; T29E15.25) mRNA, complete cds Length = 2701 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gacccggcggtggcggcggc 216 |||||||||||||||||||| Sbjct: 221 gacccggcggtggcggcggc 240
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 gaagttgctgcagtttctgc 191 |||||||||||||||||||| Sbjct: 15438308 gaagttgctgcagtttctgc 15438289 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 cggcggtggcggcggccaacgacg 224 |||||| ||||||||||||||||| Sbjct: 14482126 cggcggcggcggcggccaacgacg 14482149
>gb|AC073592.11| Homo sapiens 12 BAC RP11-83B20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161127 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 ttctccccaggtcccctcct 76 |||||||||||||||||||| Sbjct: 50425 ttctccccaggtcccctcct 50444
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 cggcgctgtcggccggcgcggcgg 368 |||||||| ||||||||||||||| Sbjct: 3373553 cggcgctgccggccggcgcggcgg 3373576
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 cccggcggtggcggcggcca 218 |||||||||||||||||||| Sbjct: 3189265 cccggcggtggcggcggcca 3189246 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 cgagcacgtcggccacggcg 286 |||||||||||||||||||| Sbjct: 773550 cgagcacgtcggccacggcg 773531
>dbj|AP005490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0049I01 Length = 140261 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 cggcggtggcggcggccaacgacg 224 |||||| ||||||||||||||||| Sbjct: 76994 cggcggcggcggcggccaacgacg 77017
>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0670E08 Length = 133106 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 cggcggtggcggcggccaacgacg 224 |||||| ||||||||||||||||| Sbjct: 126409 cggcggcggcggcggccaacgacg 126432
>dbj|AP004553.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1790_D02 Length = 162928 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 gaagttgctgcagtttctgc 191 |||||||||||||||||||| Sbjct: 123884 gaagttgctgcagtttctgc 123865
>dbj|AK073790.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067A07, full insert sequence Length = 2472 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 gaagttgctgcagtttctgc 191 |||||||||||||||||||| Sbjct: 913 gaagttgctgcagtttctgc 932
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 agcgcgagcacgtcggccac 282 |||||||||||||||||||| Sbjct: 1251002 agcgcgagcacgtcggccac 1250983
>dbj|AK066783.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075O09, full insert sequence Length = 2726 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 gaagttgctgcagtttctgc 191 |||||||||||||||||||| Sbjct: 1436 gaagttgctgcagtttctgc 1455
>gb|BT002087.1| Arabidopsis thaliana putative eukaryotic initiation factor 4, eIF4 (At2g24050) mRNA, complete cds Length = 2418 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gacccggcggtggcggcggc 216 |||||||||||||||||||| Sbjct: 38 gacccggcggtggcggcggc 57
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 gcggcgctgtcggccggcgcggcg 367 |||||| ||||||||||||||||| Sbjct: 1822192 gcggcggtgtcggccggcgcggcg 1822169
>emb|AL713939.6|CNS07YPL Oryza sativa chromosome 12, . BAC OJ1722_D03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 171861 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 acccggcggtggcggcggcc 217 |||||||||||||||||||| Sbjct: 74471 acccggcggtggcggcggcc 74490
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ctgaaaacctttcttcttcc 22 |||||||||||||||||||| Sbjct: 314611 ctgaaaacctttcttcttcc 314630 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,070,067 Number of Sequences: 3902068 Number of extensions: 4070067 Number of successful extensions: 98549 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96493 Number of HSP's gapped (non-prelim): 2053 length of query: 440 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 418 effective length of database: 17,147,199,772 effective search space: 7167529504696 effective search space used: 7167529504696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
