ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart61d12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY111881.1| Zea mays CL1968_1 mRNA sequence Length = 1450 Score = 50.1 bits (25), Expect = 5e-04 Identities = 25/25 (100%) Strand = Plus / Plus Query: 11 gatgcgccaagggctgtcttcccca 35 ||||||||||||||||||||||||| Sbjct: 149 gatgcgccaagggctgtcttcccca 173
>gb|U68462.1|SAU68462 Striga asiatica actin (SA-ACT2) gene, complete cds Length = 2030 Score = 50.1 bits (25), Expect = 5e-04 Identities = 41/45 (91%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttccccaagtatcgttgggcgccc 52 |||||||| |||||||||||||||||| |||||||| || ||||| Sbjct: 353 gatgatgctccaagggctgtcttcccc-agtatcgtgggccgccc 396
>ref|XM_469569.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1540 Score = 48.1 bits (24), Expect = 0.002 Identities = 27/28 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 ||||||||||| |||||||||||||||| Sbjct: 168 gatgatgcgcccagggctgtcttcccca 195
>gb|BT016731.1| Zea mays clone Contig564 mRNA sequence Length = 1589 Score = 48.1 bits (24), Expect = 0.002 Identities = 27/28 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 |||||||||||||| ||||||||||||| Sbjct: 162 gatgatgcgccaagagctgtcttcccca 189
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.002 Identities = 27/28 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 ||||||||||| |||||||||||||||| Sbjct: 28780634 gatgatgcgcccagggctgtcttcccca 28780661
>gb|AY134752.1| Phalaenopsis hybrid cultivar actin (PACT4) mRNA, complete cds Length = 1574 Score = 48.1 bits (24), Expect = 0.002 Identities = 27/28 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 |||||||| ||||||||||||||||||| Sbjct: 156 gatgatgctccaagggctgtcttcccca 183
>emb|X15865.1|OSRAC1D O.sativa RAc1 gene for actin Length = 1550 Score = 48.1 bits (24), Expect = 0.002 Identities = 27/28 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 ||||||||||| |||||||||||||||| Sbjct: 159 gatgatgcgcccagggctgtcttcccca 186
>emb|X16280.1|OSRAC1 Oryza sativa RAc1 mRNA for actin Length = 1460 Score = 48.1 bits (24), Expect = 0.002 Identities = 27/28 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 ||||||||||| |||||||||||||||| Sbjct: 163 gatgatgcgcccagggctgtcttcccca 190
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.002 Identities = 27/28 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 ||||||||||| |||||||||||||||| Sbjct: 28871958 gatgatgcgcccagggctgtcttcccca 28871985
>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence Length = 147344 Score = 48.1 bits (24), Expect = 0.002 Identities = 27/28 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 ||||||||||| |||||||||||||||| Sbjct: 87615 gatgatgcgcccagggctgtcttcccca 87642
>gb|AF288226.1|AF288226 Setaria italica actin mRNA, complete cds Length = 1134 Score = 48.1 bits (24), Expect = 0.002 Identities = 27/28 (96%) Strand = Plus / Plus Query: 6 gggatgatgcgccaagggctgtcttccc 33 ||||||||||||| |||||||||||||| Sbjct: 74 gggatgatgcgccgagggctgtcttccc 101
>gb|AF246714.1|AF246714 Phalaenopsis sp. 'True Lady' actin-like protein (ACT1) mRNA, complete cds Length = 1607 Score = 48.1 bits (24), Expect = 0.002 Identities = 27/28 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 |||||||| ||||||||||||||||||| Sbjct: 189 gatgatgctccaagggctgtcttcccca 216
>dbj|AK100267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065A19, full insert sequence Length = 1546 Score = 48.1 bits (24), Expect = 0.002 Identities = 27/28 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 ||||||||||| |||||||||||||||| Sbjct: 182 gatgatgcgcccagggctgtcttcccca 209
>dbj|AK072433.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092J24, full insert sequence Length = 2503 Score = 48.1 bits (24), Expect = 0.002 Identities = 27/28 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 ||||||||||| |||||||||||||||| Sbjct: 177 gatgatgcgcccagggctgtcttcccca 204
>dbj|AK058421.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-D09, full insert sequence Length = 1508 Score = 48.1 bits (24), Expect = 0.002 Identities = 27/28 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 ||||||||||| |||||||||||||||| Sbjct: 176 gatgatgcgcccagggctgtcttcccca 203
>gb|AY104722.1| Zea mays PCO080070 mRNA sequence Length = 1688 Score = 48.1 bits (24), Expect = 0.002 Identities = 27/28 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 |||||||||||||| ||||||||||||| Sbjct: 253 gatgatgcgccaagagctgtcttcccca 280
>dbj|AB047313.1| Oryza sativa (japonica cultivar-group) OsRAc1 mRNA for actin, complete cds Length = 1556 Score = 48.1 bits (24), Expect = 0.002 Identities = 27/28 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 ||||||||||| |||||||||||||||| Sbjct: 168 gatgatgcgcccagggctgtcttcccca 195
>gb|J01238.1|MZEACT1G Maize actin 1 gene (MAc1), complete cds Length = 2424 Score = 48.1 bits (24), Expect = 0.002 Identities = 27/28 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 |||||||||||||| ||||||||||||| Sbjct: 377 gatgatgcgccaagagctgtcttcccca 404
>gb|M26689.1|MUSGAAC Mus musculus smooth muscle gamma actin mRNA, complete cds Length = 1242 Score = 46.1 bits (23), Expect = 0.008 Identities = 26/27 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccc 34 ||||||||||| ||||||||||||||| Sbjct: 110 gatgatgcgcccagggctgtcttcccc 136
>gb|AC120533.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence Length = 148220 Score = 44.1 bits (22), Expect = 0.033 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 6 gggatgatgcgccaagggctgtcttccccaagtatcgttgggcgcccccg 55 |||| |||||||| |||||||| ||||| | ||||||| ||||||||||| Sbjct: 65190 gggacgatgcgcccagggctgttttcccta-gtatcgtggggcgcccccg 65238
>gb|AY212324.1| Oryza sativa (japonica cultivar-group) actin (Act) mRNA, complete cds Length = 1134 Score = 44.1 bits (22), Expect = 0.033 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 6 gggatgatgcgccaagggctgtcttccccaagtatcgttgggcgcccccg 55 |||| |||||||| |||||||| ||||| | ||||||| ||||||||||| Sbjct: 74 gggacgatgcgcccagggctgttttcccta-gtatcgtggggcgcccccg 122
>gb|AY742219.1| Saccharum officinarum actin mRNA, complete cds Length = 1134 Score = 44.1 bits (22), Expect = 0.033 Identities = 25/26 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttccc 33 |||||||| ||||||||||||||||| Sbjct: 76 gatgatgcaccaagggctgtcttccc 101
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.033 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 6 gggatgatgcgccaagggctgtcttccccaagtatcgttgggcgcccccg 55 |||| |||||||| |||||||| ||||| | ||||||| ||||||||||| Sbjct: 3059820 gggacgatgcgcccagggctgttttcccta-gtatcgtggggcgcccccg 3059868
>dbj|AK071450.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023098M18, full insert sequence Length = 1651 Score = 44.1 bits (22), Expect = 0.033 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 6 gggatgatgcgccaagggctgtcttccccaagtatcgttgggcgcccccg 55 |||| |||||||| |||||||| ||||| | ||||||| ||||||||||| Sbjct: 220 gggacgatgcgcccagggctgttttcccta-gtatcgtggggcgcccccg 268
>dbj|AK060893.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C05, full insert sequence Length = 1426 Score = 44.1 bits (22), Expect = 0.033 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 6 gggatgatgcgccaagggctgtcttccccaagtatcgttgggcgcccccg 55 |||| |||||||| |||||||| ||||| | ||||||| ||||||||||| Sbjct: 218 gggacgatgcgcccagggctgttttcccta-gtatcgtggggcgcccccg 266
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.033 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 6 gggatgatgcgccaagggctgtcttccccaagtatcgttgggcgcccccg 55 |||| |||||||| |||||||| ||||| | ||||||| ||||||||||| Sbjct: 3068851 gggacgatgcgcccagggctgttttcccta-gtatcgtggggcgcccccg 3068899
>gb|U60485.1|STU60485 Solanum tuberosum actin (Pot66) gene, partial cds Length = 1580 Score = 44.1 bits (22), Expect = 0.033 Identities = 25/26 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttccc 33 |||||||| ||||||||||||||||| Sbjct: 123 gatgatgctccaagggctgtcttccc 148
>gb|U60484.1|STU60484 Solanum tuberosum actin (Pot79) gene, partial cds Length = 1580 Score = 44.1 bits (22), Expect = 0.033 Identities = 25/26 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttccc 33 |||||||| ||||||||||||||||| Sbjct: 125 gatgatgctccaagggctgtcttccc 150
>gb|U60482.1|SLU60482 Solanum lycopersicum actin (Tom52) gene, partial cds Length = 1503 Score = 44.1 bits (22), Expect = 0.033 Identities = 25/26 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttccc 33 |||||||| ||||||||||||||||| Sbjct: 17 gatgatgctccaagggctgtcttccc 42
>gb|AY145451.1| Hordeum vulgare actin mRNA, complete cds Length = 1421 Score = 44.1 bits (22), Expect = 0.033 Identities = 25/26 (96%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttccc 33 |||||||||||||||||||| ||||| Sbjct: 95 gatgatgcgccaagggctgttttccc 120
>ref|XM_387670.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07494.1) partial mRNA Length = 1230 Score = 40.1 bits (20), Expect = 0.51 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tggcagggatgatgcgccaa 20 |||||||||||||||||||| Sbjct: 339 tggcagggatgatgcgccaa 358
>gb|U68463.1|SAU68463 Striga asiatica actin (SA-ACT3) pseudogene, complete cds Length = 2038 Score = 40.1 bits (20), Expect = 0.51 Identities = 26/28 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 |||||||| || |||||||||||||||| Sbjct: 757 gatgatgctcctagggctgtcttcccca 784
>gb|U68461.1|SAU68461 Striga asiatica actin (SA-ACT1) gene, complete cds Length = 2139 Score = 40.1 bits (20), Expect = 0.51 Identities = 26/28 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 |||||||| || |||||||||||||||| Sbjct: 421 gatgatgctcctagggctgtcttcccca 448
>gb|AF002687.1|AF002687 Cycas revoluta Cyc4 pseudogene, partial sequence Length = 1544 Score = 40.1 bits (20), Expect = 0.51 Identities = 26/28 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccca 35 ||||||||||||||||| || ||||||| Sbjct: 235 gatgatgcgccaagggcagtgttcccca 262
>gb|DQ229162.1| Strongylocentrotus intermedius actin 1 mRNA, partial cds Length = 456 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 gatgcgccaagggctgtcttccc 33 ||||| ||||||||||||||||| Sbjct: 17 gatgccccaagggctgtcttccc 39
>gb|AY618350.1| Strongylocentrotus droebachiensis actin-like gene, partial sequence Length = 1498 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 gatgcgccaagggctgtcttccc 33 ||||| ||||||||||||||||| Sbjct: 55 gatgccccaagggctgtcttccc 77
>gb|DQ187949.1| Strongylocentrotus nudus actin-1 mRNA, partial cds Length = 456 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 gatgcgccaagggctgtcttccc 33 ||||| ||||||||||||||||| Sbjct: 17 gatgccccaagggctgtcttccc 39
>gb|AC138342.11| Mus musculus chromosome 12, clone RP23-37C23, complete sequence Length = 208939 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 gccaagggctgtcttcccc 34 ||||||||||||||||||| Sbjct: 175525 gccaagggctgtcttcccc 175543
>gb|BC049611.1| Mus musculus actin, gamma 2, smooth muscle, enteric, mRNA (cDNA clone MGC:58296 IMAGE:6773765), complete cds Length = 1324 Score = 38.2 bits (19), Expect = 2.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccc 34 |||||||| || ||||||||||||||| Sbjct: 213 gatgatgcccccagggctgtcttcccc 239
>gb|BC002042.1| Mus musculus actin, gamma 2, smooth muscle, enteric, mRNA (cDNA clone MGC:6022 IMAGE:3591323), complete cds Length = 1319 Score = 38.2 bits (19), Expect = 2.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccc 34 |||||||| || ||||||||||||||| Sbjct: 162 gatgatgcccccagggctgtcttcccc 188
>emb|X03076.1|SFACT15B Strongylocentrotus franciscanus actin gene Sfa 15B Length = 1876 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 gatgcgccaagggctgtcttccc 33 ||||| ||||||||||||||||| Sbjct: 256 gatgccccaagggctgtcttccc 278
>emb|X03075.1|SFACT15A Strongylocentrotus franciscanus actin gene Sfa 15A Length = 1956 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 gatgcgccaagggctgtcttccc 33 ||||| ||||||||||||||||| Sbjct: 343 gatgccccaagggctgtcttccc 365
>gb|AC163651.2| Mus musculus BAC clone RP24-358K11 from chromosome 12, complete sequence Length = 186790 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 16 gccaagggctgtcttcccc 34 ||||||||||||||||||| Sbjct: 155005 gccaagggctgtcttcccc 154987
>dbj|AK146631.1| Mus musculus 17 days embryo stomach cDNA, RIKEN full-length enriched library, clone:I920036L04 product:actin, gamma 2, smooth muscle, enteric, full insert sequence Length = 1287 Score = 38.2 bits (19), Expect = 2.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccc 34 |||||||| || ||||||||||||||| Sbjct: 154 gatgatgcccccagggctgtcttcccc 180
>dbj|AK168649.1| Mus musculus 17 days embryo stomach cDNA, RIKEN full-length enriched library, clone:I920041F08 product:actin, gamma 2, smooth muscle, enteric, full insert sequence Length = 1287 Score = 38.2 bits (19), Expect = 2.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccc 34 |||||||| || ||||||||||||||| Sbjct: 154 gatgatgcccccagggctgtcttcccc 180
>gb|AC090649.4| Genomic sequence for Mus musculus, clone RP23-361O12, complete sequence Length = 211611 Score = 38.2 bits (19), Expect = 2.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccc 34 |||||||| || ||||||||||||||| Sbjct: 132838 gatgatgcccccagggctgtcttcccc 132864
>gb|S74059.1| Tg616=CyI actin [Tripneustes gratilla=sea urchins, embryos, Genomic, 5275 nt] Length = 5277 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 gatgcgccaagggctgtcttccc 33 ||||| ||||||||||||||||| Sbjct: 2536 gatgccccaagggctgtcttccc 2558
>gb|AY260165.1| Lactuca sativa actin mRNA, partial cds Length = 386 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 gggatgatgcgccaagggc 24 ||||||||||||||||||| Sbjct: 8 gggatgatgcgccaagggc 26
>gb|BC094877.1| Homo sapiens actin, gamma 2, smooth muscle, enteric, mRNA (cDNA clone MGC:104923 IMAGE:6728431), complete cds Length = 1304 Score = 38.2 bits (19), Expect = 2.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccc 34 |||||||| || ||||||||||||||| Sbjct: 142 gatgatgcccccagggctgtcttcccc 168
>ref|NM_214528.1| Strongylocentrotus purpuratus cytoskeletal actin CyIIb (CyIIb), mRNA Length = 1131 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 gatgcgccaagggctgtcttccc 33 ||||| ||||||||||||||||| Sbjct: 76 gatgccccaagggctgtcttccc 98
>gb|AY104628.1| Zea mays PCO095216 mRNA sequence Length = 1671 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 gatgcgccaagggctgtcttccc 33 ||||||||||||||||| ||||| Sbjct: 200 gatgcgccaagggctgttttccc 222
>gb|U20365.1|MMSMGAS2 Mus musculus smooth muscle gamma-actin gene, complete cds Length = 19420 Score = 38.2 bits (19), Expect = 2.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccc 34 |||||||| || ||||||||||||||| Sbjct: 3984 gatgatgcccccagggctgtcttcccc 4010
>ref|NM_009610.1| Mus musculus actin, gamma 2, smooth muscle, enteric (Actg2), mRNA Length = 1242 Score = 38.2 bits (19), Expect = 2.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttcccc 34 |||||||| || ||||||||||||||| Sbjct: 119 gatgatgcccccagggctgtcttcccc 145
>emb|AM168448.1| Capsicum chinense partial mRNA for actin (act gene) Length = 873 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtctt 30 |||||||| |||||||||||||| Sbjct: 76 gatgatgccccaagggctgtctt 98
>gb|U82662.1|HEACTCYII1 Heliocidaris erythrogramma cytoplasmic actin CyII (HeCyII) gene, exons 2 and 3 Length = 748 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 gatgcgccaagggctgtcttccc 33 ||||| ||||||||||||||||| Sbjct: 33 gatgccccaagggctgtcttccc 55
>gb|U82660.1|HECYTACT1 Heliocidaris erythrogramma cytoplasmic actin CyII (HeCyII) gene, exons 2 and 3 Length = 749 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 gatgcgccaagggctgtcttccc 33 ||||| ||||||||||||||||| Sbjct: 33 gatgccccaagggctgtcttccc 55
>gb|U82542.1|LVC4ACT01 Lytechinus variegatus cytoplasmic actin (LvC4) gene, exon 2, partial cds Length = 476 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 gatgcgccaagggctgtcttccc 33 ||||| ||||||||||||||||| Sbjct: 35 gatgccccaagggctgtcttccc 57
>gb|U22507.1|HTU22507 Heliocidaris tuberculata cytoplasmic actin type III (htcyIII) mRNA, complete cds Length = 1854 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 gatgcgccaagggctgtcttccc 33 ||||| ||||||||||||||||| Sbjct: 162 gatgccccaagggctgtcttccc 184
>gb|U60511.1|ZMU60511 Zea mays actin (Maz81) gene, partial cds Length = 1289 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 gatgcgccaagggctgtcttccc 33 ||||||||||||||||| ||||| Sbjct: 101 gatgcgccaagggctgttttccc 123
>gb|U60510.1|ZMU60510 Zea mays actin (Maz83) gene, partial cds Length = 1272 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 gatgcgccaagggctgtcttccc 33 ||||||||||||||||| ||||| Sbjct: 96 gatgcgccaagggctgttttccc 118
>gb|U09651.1|LPU09651 Lytechinus pictus cytoskeletal actin mRNA, complete cds Length = 1875 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 gatgcgccaagggctgtcttccc 33 ||||| ||||||||||||||||| Sbjct: 139 gatgccccaagggctgtcttccc 161
>gb|M35323.1|SUSCYIIBA S.purpuratus cytoskeletal actin CyIIb gene, complete cds Length = 1972 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 gatgcgccaagggctgtcttccc 33 ||||| ||||||||||||||||| Sbjct: 326 gatgccccaagggctgtcttccc 348
>gb|BT016680.1| Zea mays clone Contig513 mRNA sequence Length = 1717 Score = 36.2 bits (18), Expect = 8.0 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttccc 33 |||||||| ||||||||||| ||||| Sbjct: 262 gatgatgcaccaagggctgtattccc 287
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 36.2 bits (18), Expect = 8.0 Identities = 24/26 (92%) Strand = Plus / Minus Query: 8 gatgatgcgccaagggctgtcttccc 33 |||||||| ||||||||||| ||||| Sbjct: 10667 gatgatgcaccaagggctgttttccc 10642
>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome condensation factor (CCF), putative resistance protein (RGA-2), putative resistance protein (RGA2) and putative nodulin-like-like protein (NLL) gene, complete cds; and retrotransposons Josephine, Angela-2, Angela-4, Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5, Barbara, Isabelle, Erika-2, and Claudia Length = 211009 Score = 36.2 bits (18), Expect = 8.0 Identities = 24/26 (92%) Strand = Plus / Minus Query: 8 gatgatgcgccaagggctgtcttccc 33 |||||||| ||||||||||| ||||| Sbjct: 788 gatgatgcaccaagggctgttttccc 763
>ref|XM_363071.1| Magnaporthe grisea 70-15 predicted protein (MG08655.4) partial cds Length = 1035 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 tggcagggatgatgcgcc 18 |||||||||||||||||| Sbjct: 319 tggcagggatgatgcgcc 302
>gb|AC119805.6| Mus musculus chromosome 16, clone RP23-144H22, complete sequence Length = 215566 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 24 ctgtcttccccaagtatc 41 |||||||||||||||||| Sbjct: 205697 ctgtcttccccaagtatc 205680
>emb|X69059.1|PCIIBACT P.carnea act IIb mRNA for actin Length = 1239 Score = 36.2 bits (18), Expect = 8.0 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttccc 33 |||||||| ||||| ||||||||||| Sbjct: 73 gatgatgctccaagagctgtcttccc 98
>emb|X69058.1|PCIAACT P.carnea act Ia mRNA for actin Length = 1384 Score = 36.2 bits (18), Expect = 8.0 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttccc 33 |||||||| ||||| ||||||||||| Sbjct: 73 gatgatgctccaagagctgtcttccc 98
>gb|AY279540.1| Meloidogyne hapla clone 1-1 putative chorismate mutase (CM) gene, partial sequence Length = 693 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 20 agggctgtcttccccaag 37 |||||||||||||||||| Sbjct: 353 agggctgtcttccccaag 336
>gb|AY763948.1| Ammonia sp. isolate 2306 clone AM17 actin type 2 gene, partial cds Length = 1188 Score = 36.2 bits (18), Expect = 8.0 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttccc 33 |||||||| ||||| ||||||||||| Sbjct: 4 gatgatgcaccaagagctgtcttccc 29
>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete sequence Length = 187012 Score = 36.2 bits (18), Expect = 8.0 Identities = 24/26 (92%) Strand = Plus / Minus Query: 8 gatgatgcgccaagggctgtcttccc 33 |||||||| ||||||||||| ||||| Sbjct: 19283 gatgatgcaccaagggctgttttccc 19258
>dbj|AB086243.1| Coryphaenoides yaquinae mRNA for skeletal alpha-actin type-2b, complete cds Length = 1401 Score = 36.2 bits (18), Expect = 8.0 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttccc 33 ||||| ||||| |||||||||||||| Sbjct: 76 gatgacgcgcccagggctgtcttccc 101
>dbj|AB086241.1| Coryphaenoides armatus mRNA for skeletal alpha-actin type-2b, complete cds Length = 1401 Score = 36.2 bits (18), Expect = 8.0 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttccc 33 ||||| ||||| |||||||||||||| Sbjct: 76 gatgacgcgcccagggctgtcttccc 101
>emb|CT010565.14| Mouse DNA sequence from clone RP23-263E11 on chromosome 16, complete sequence Length = 200242 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 24 ctgtcttccccaagtatc 41 |||||||||||||||||| Sbjct: 192310 ctgtcttccccaagtatc 192327
>gb|U37719.1|NFU37719 Naegleria fowleri actin gene, complete cds Length = 1608 Score = 36.2 bits (18), Expect = 8.0 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttccc 33 |||||||| ||||| ||||||||||| Sbjct: 416 gatgatgcaccaagagctgtcttccc 441
>gb|U60509.1|ZMU60509 Zea mays actin (Maz87) gene, partial cds Length = 1509 Score = 36.2 bits (18), Expect = 8.0 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttccc 33 |||||||| ||||||||||| ||||| Sbjct: 98 gatgatgcaccaagggctgtattccc 123
>gb|U60493.1|NTU60493 Nicotiana tabacum actin (Tob53) gene, partial cds Length = 1314 Score = 36.2 bits (18), Expect = 8.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 6 gggatgatgcgccaagggctgt 27 |||||||||| ||||||||||| Sbjct: 100 gggatgatgctccaagggctgt 121
>gb|U60505.1|GMU60505 Glycine max actin (Soy115) gene, partial cds Length = 1660 Score = 36.2 bits (18), Expect = 8.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 6 gggatgatgcgccaagggctgt 27 |||||||||| ||||||||||| Sbjct: 128 gggatgatgctccaagggctgt 149
>gb|M90311.1|NGRACTINI Naegleria fowleri actin mRNA, complete cds Length = 1220 Score = 36.2 bits (18), Expect = 8.0 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttccc 33 |||||||| ||||| ||||||||||| Sbjct: 94 gatgatgcaccaagagctgtcttccc 119
>dbj|D49831.1| Pneumocystis carinii DNA for actin, complete cds Length = 2148 Score = 36.2 bits (18), Expect = 8.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 6 gggatgatgcgccaagggctgt 27 |||||||||| ||||||||||| Sbjct: 557 gggatgatgctccaagggctgt 578
>dbj|D49829.1| Pneumocystis carinii mRNA for actin, complete cds Length = 1398 Score = 36.2 bits (18), Expect = 8.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 6 gggatgatgcgccaagggctgt 27 |||||||||| ||||||||||| Sbjct: 143 gggatgatgctccaagggctgt 164
>dbj|AB032360.1| Mimosa pudica mRNA for actin isoform A, partial cds Length = 793 Score = 36.2 bits (18), Expect = 8.0 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 gatgatgcgccaagggctgtcttccc 33 |||||||| ||||||||||| ||||| Sbjct: 20 gatgatgctccaagggctgtgttccc 45 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 266,525 Number of Sequences: 3902068 Number of extensions: 266525 Number of successful extensions: 67670 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 67537 Number of HSP's gapped (non-prelim): 139 length of query: 56 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 36 effective length of database: 17,155,003,908 effective search space: 617580140688 effective search space used: 617580140688 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)
