ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart61d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AOC3_ARATH (Q9LS01) Allene oxide cyclase 3, chloroplast precurso... 75 7e-14
2AOC4_ARATH (Q93ZC5) Allene oxide cyclase 4, chloroplast precurso... 73 3e-13
3AOC2_ARATH (Q9LS02) Allene oxide cyclase 2, chloroplast precurso... 65 9e-11
4AOC1_ARATH (Q9LS03) Allene oxide cyclase 1, chloroplast precurso... 64 2e-10
5MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing prote... 28 7.2
6ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment) 28 9.4

>AOC3_ARATH (Q9LS01) Allene oxide cyclase 3, chloroplast precursor (EC|
           5.3.99.6)
          Length = 258

 Score = 75.1 bits (183), Expect = 7e-14
 Identities = 35/55 (63%), Positives = 43/55 (78%)
 Frame = +3

Query: 267 DARPSKVQELHVYELNERDRESPAYLRLSANQSQNALGDLVPFTNKVYNGSLDKR 431
           ++RPSK+QEL+VYELNE DR SPA L+L    ++  LGDLVPFTNK+Y G L KR
Sbjct: 79  NSRPSKIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKR 133



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>AOC4_ARATH (Q93ZC5) Allene oxide cyclase 4, chloroplast precursor (EC|
           5.3.99.6)
          Length = 254

 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 34/54 (62%), Positives = 40/54 (74%)
 Frame = +3

Query: 270 ARPSKVQELHVYELNERDRESPAYLRLSANQSQNALGDLVPFTNKVYNGSLDKR 431
           +RP+K+QEL+VYE NE DR SPA L+L     Q  LGDLVPFTNK+Y G L KR
Sbjct: 76  SRPTKIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKR 129



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>AOC2_ARATH (Q9LS02) Allene oxide cyclase 2, chloroplast precursor (EC|
           5.3.99.6)
          Length = 253

 Score = 64.7 bits (156), Expect = 9e-11
 Identities = 34/53 (64%), Positives = 38/53 (71%)
 Frame = +3

Query: 273 RPSKVQELHVYELNERDRESPAYLRLSANQSQNALGDLVPFTNKVYNGSLDKR 431
           RPSKVQEL VYE+NE DR SP  L+ +A      LGDLVPFTNK+Y G L KR
Sbjct: 77  RPSKVQELSVYEINELDRHSPKILK-NAFSLMFGLGDLVPFTNKLYTGDLKKR 128



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>AOC1_ARATH (Q9LS03) Allene oxide cyclase 1, chloroplast precursor (EC|
           5.3.99.6) (Early-responsive to dehydration 12 protein)
          Length = 254

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 33/53 (62%), Positives = 39/53 (73%)
 Frame = +3

Query: 273 RPSKVQELHVYELNERDRESPAYLRLSANQSQNALGDLVPFTNKVYNGSLDKR 431
           RPSKVQEL VYE+N+ DR SP  L+ +A   +  LGDLVPFTNK+Y G L KR
Sbjct: 78  RPSKVQELSVYEINDLDRHSPKILK-NAFSFRFGLGDLVPFTNKLYTGDLKKR 129



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>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1|
          Length = 827

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 237 LFSPKPAVAMDARPSKVQELHVYELNERD 323
           LF+   AV  DARP+ VQ+  V +L ERD
Sbjct: 562 LFTDNVAVPTDARPAGVQKPSVADLLERD 590



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>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)|
          Length = 2469

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 267  DARPSKVQELHVYELNERDRESPAYLRLSANQSQNALGDLVP 392
            D RP  + ELH+     R  E PA     A+ S ++LGD+ P
Sbjct: 1497 DDRPEAIPELHMVPAAWRGLEMPA----PADDSSSSLGDVSP 1534


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,746,808
Number of Sequences: 219361
Number of extensions: 343765
Number of successful extensions: 1151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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