ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart61d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ308488.1|HVU308488 Hordeum vulgare mRNA for allene oxide c... 753 0.0
2gb|BT016725.1| Zea mays clone Contig558 mRNA sequence 280 4e-72
3gb|AY488136.1| Zea mays allene oxide cyclase (aoc) mRNA, complet... 274 2e-70
4gb|AY103942.1| Zea mays PCO144933 mRNA sequence 274 2e-70
5ref|XM_468844.1| Oryza sativa (japonica cultivar-group), mRNA 206 4e-50
6emb|AJ493664.1|OSA493664 Oryza sativa mRNA for allene oxide cycl... 206 4e-50
7dbj|AK071443.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 1e-47
8dbj|AK060025.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 1e-47
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 180 2e-42
10gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genom... 180 2e-42
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 180 2e-42
12gb|AC105225.5| Homo sapiens chromosome 8, clone RP11-775E18, com... 46 0.094
13gb|AC144578.2| Homo sapiens chromosome 8, clone XXfos-802716D4, ... 46 0.094
14gb|AC135075.5| Homo sapiens chromosome 8, clone RP11-557G24, com... 46 0.094
15gb|DQ314585.1| Ipomoea nil chloroplast allene oxide cyclase prec... 46 0.094
16gb|AY154776.1| Physcomitrella patens allene oxide cyclase (aoc) ... 42 1.5
17gb|AC156593.2| Laccaria bicolor clone JGIAHZW-12X, complete sequ... 42 1.5
18gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome 42 1.5
19dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
20dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
21emb|AJ508993.1|PPA508993 Physcomitrella patens mRNA for allene o... 42 1.5
22gb|BC090853.1| Homo sapiens homeobox D8, mRNA (cDNA clone MGC:10... 42 1.5
23gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.5
24emb|AL672244.15| Mouse DNA sequence from clone RP23-43I8 on chro... 42 1.5
25ref|XM_482852.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
26ref|XM_507264.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.8
27gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 5.8
28gb|AC004509.1| Homo sapiens chromosome 16, cosmid clone RT191 (L... 40 5.8
29ref|XM_864831.1| PREDICTED: Bos taurus similar to TRK-fused gene... 40 5.8
30ref|XM_612436.2| PREDICTED: Bos taurus similar to ets variant ge... 40 5.8
31ref|XM_879937.1| PREDICTED: Bos taurus similar to ets variant ge... 40 5.8
32ref|XM_867264.1| PREDICTED: Bos taurus similar to ets variant ge... 40 5.8
33ref|XM_879886.1| PREDICTED: Bos taurus similar to ets variant ge... 40 5.8
34gb|AC164562.4| Mus musculus BAC clone RP23-148G12 from chromosom... 40 5.8
35ref|XM_195466.5| PREDICTED: Mus musculus gene model 659, (NCBI) ... 40 5.8
36ref|XM_001001226.1| PREDICTED: Mus musculus gene model 659, (NCB... 40 5.8
37gb|AC122808.3| Mus musculus BAC clone RP23-298M23 from 3, comple... 40 5.8
38emb|AL353611.19| Human DNA sequence from clone RP11-447M12 on ch... 40 5.8
39gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 5.8
40gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome 40 5.8
41gb|S48582.1| style-specific extensin-like gene [Nicotiana alata,... 40 5.8
42dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
43dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
44dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
45dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
46dbj|AK119595.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
47ref|XM_310728.2| Anopheles gambiae str. PEST ENSANGP00000010003 ... 40 5.8
48dbj|AK106796.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
49gb|AY461847.1| Glycine max endo-1,3-beta-glucanase mRNA, complet... 40 5.8 
>emb|AJ308488.1|HVU308488 Hordeum vulgare mRNA for allene oxide cyclase (aoc gene)
          Length = 920

 Score =  753 bits (380), Expect = 0.0
 Identities = 398/404 (98%)
 Strand = Plus / Plus

                                                                       
Query: 29  cggatccaagagtatcatcgtcggttagccgtcgccaccaccaccaagaggcaacaccgc 88
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cggatccaagagtatcatcgtcggttagccgtcgccaccaccaccaagaggcaacaccgc 60

                                                                       
Query: 89  catggcagcgcccccctcctccgtctccgtcagggccggcgcgtccgtctcggcgaagct 148
           |||||||| || ||| ||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 61  catggcagtgcgcccttcctccgtctccgtccgggccggtgcgtccgtctcggcgaagct 120

                                                                       
Query: 149 gaccccttcgcgggccgcgagggctgggctcggtggcagggtcagcgtcagctcgggcag 208
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaccccttggcgggccgcgagggctgggctcggtggcagggtcagcgtcagctcgggcag 180

                                                                       
Query: 209 gaggtgcggcggccccgtgcgggcgtcgctcttctcgcccaagcctgcggtggccatgga 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaggtgcggcggccccgtgcgggcgtcgctcttctcgcccaagcctgcggtggccatgga 240

                                                                       
Query: 269 cgcgcggccgagcaaggtgcaggagctgcacgtgtacgagctcaacgagcgcgaccgcga 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgcgcggccgagcaaggtgcaggagctgcacgtgtacgagctcaacgagcgcgaccgcga 300

                                                                       
Query: 329 gagccccgcctacctccggctgagcgccaaccagagccagaacgcgctcggcgacctcgt 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gagccccgcctacctccggctgagcgccaaccagagccagaacgcgctcggcgacctcgt 360

                                                       
Query: 389 ccccttcaccaacaaggtgtacaacgggagcctggacaagcgga 432
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccccttcaccaacaaggtgtacaacgggagcctggacaagcgga 404
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>gb|BT016725.1| Zea mays clone Contig558 mRNA sequence
          Length = 1071

 Score =  280 bits (141), Expect = 4e-72
 Identities = 192/209 (91%)
 Strand = Plus / Plus

                                                                       
Query: 223 ccgtgcgggcgtcgctcttctcgcccaagcctgcggtggccatggacgcgcggccgagca 282
           |||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||| ||
Sbjct: 189 ccgtgcgggcgtcgctgttctcgcccaagcccgcggcggccaaggacgcgcggccgacca 248

                                                                       
Query: 283 aggtgcaggagctgcacgtgtacgagctcaacgagcgcgaccgcgagagccccgcctacc 342
           |||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 249 aggtgcaggagctgtacgtgtacgagatcaacgagcgggaccgcgagagccccgcctacc 308

                                                                       
Query: 343 tccggctgagcgccaaccagagccagaacgcgctcggcgacctcgtccccttcaccaaca 402
           | || || |||||||| ||||   |||||||||| |||||||||||||||||||||||||
Sbjct: 309 tgcgcctcagcgccaagcagacggagaacgcgctgggcgacctcgtccccttcaccaaca 368

                                        
Query: 403 aggtgtacaacgggagcctggacaagcgg 431
           ||||||||||||| |||||||||||||||
Sbjct: 369 aggtgtacaacggcagcctggacaagcgg 397
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>gb|AY488136.1| Zea mays allene oxide cyclase (aoc) mRNA, complete cds
          Length = 717

 Score =  274 bits (138), Expect = 2e-70
 Identities = 198/218 (90%)
 Strand = Plus / Plus

                                                                       
Query: 214 gcggcggccccgtgcgggcgtcgctcttctcgcccaagcctgcggtggccatggacgcgc 273
           |||||| | |||||||||||||||| |||||||||||||| |||| ||||| ||||||||
Sbjct: 125 gcggcgtcgccgtgcgggcgtcgctgttctcgcccaagcccgcggcggccaaggacgcgc 184

                                                                       
Query: 274 ggccgagcaaggtgcaggagctgcacgtgtacgagctcaacgagcgcgaccgcgagagcc 333
           |||||| |||||||||||||||| ||||||||||| |||||||||| |||||||||||||
Sbjct: 185 ggccgaccaaggtgcaggagctgtacgtgtacgagatcaacgagcgggaccgcgagagcc 244

                                                                       
Query: 334 ccgcctacctccggctgagcgccaaccagagccagaacgcgctcggcgacctcgtcccct 393
           |||| ||||| || || |||||||| ||||   |||||||||| ||||||||||||||||
Sbjct: 245 ccgcgtacctgcgcctcagcgccaagcagacggagaacgcgctgggcgacctcgtcccct 304

                                                 
Query: 394 tcaccaacaaggtgtacaacgggagcctggacaagcgg 431
           |||||||||||||||||||||| |||||||||||||||
Sbjct: 305 tcaccaacaaggtgtacaacggcagcctggacaagcgg 342
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>gb|AY103942.1| Zea mays PCO144933 mRNA sequence
          Length = 1122

 Score =  274 bits (138), Expect = 2e-70
 Identities = 198/218 (90%)
 Strand = Plus / Plus

                                                                       
Query: 214 gcggcggccccgtgcgggcgtcgctcttctcgcccaagcctgcggtggccatggacgcgc 273
           |||||| | |||||||||||||||| |||||||||||||| |||| ||||| ||||||||
Sbjct: 206 gcggcgtcgccgtgcgggcgtcgctgttctcgcccaagcccgcggcggccaaggacgcgc 265

                                                                       
Query: 274 ggccgagcaaggtgcaggagctgcacgtgtacgagctcaacgagcgcgaccgcgagagcc 333
           |||||| |||||||||||||||| ||||||||||| |||||||||| |||||||||||||
Sbjct: 266 ggccgaccaaggtgcaggagctgtacgtgtacgagatcaacgagcgggaccgcgagagcc 325

                                                                       
Query: 334 ccgcctacctccggctgagcgccaaccagagccagaacgcgctcggcgacctcgtcccct 393
           |||| ||||| || || |||||||| ||||   |||||||||| ||||||||||||||||
Sbjct: 326 ccgcgtacctgcgcctcagcgccaagcagacggagaacgcgctgggcgacctcgtcccct 385

                                                 
Query: 394 tcaccaacaaggtgtacaacgggagcctggacaagcgg 431
           |||||||||||||||||||||| |||||||||||||||
Sbjct: 386 tcaccaacaaggtgtacaacggcagcctggacaagcgg 423
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>ref|XM_468844.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1265

 Score =  206 bits (104), Expect = 4e-50
 Identities = 179/204 (87%)
 Strand = Plus / Plus

                                                                       
Query: 228 cgggcgtcgctcttctcgcccaagcctgcggtggccatggacgcgcggccgagcaaggtg 287
           ||||||||||| |||||||| ||||| |||  | ||| ||||||| |||||  |||||||
Sbjct: 256 cgggcgtcgctgttctcgccgaagccggcgacgcccaaggacgcgaggccggccaaggtg 315

                                                                       
Query: 288 caggagctgcacgtgtacgagctcaacgagcgcgaccgcgagagccccgcctacctccgg 347
           |||||| ||  |||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 316 caggagatgttcgtgtacgagatcaacgagcgcgaccgcgagagccccgcctacctccgc 375

                                                                       
Query: 348 ctgagcgccaaccagagccagaacgcgctcggcgacctcgtccccttcaccaacaaggtg 407
           || |||||||| ||||   ||||||| |||||||| ||||||||||||||||||||| ||
Sbjct: 376 ctcagcgccaagcagacggagaacgccctcggcgatctcgtccccttcaccaacaagctg 435

                                   
Query: 408 tacaacgggagcctggacaagcgg 431
           |||| ||| |||||||||||||||
Sbjct: 436 tacagcggaagcctggacaagcgg 459
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>emb|AJ493664.1|OSA493664 Oryza sativa mRNA for allene oxide cyclase (aoc gene)
          Length = 1171

 Score =  206 bits (104), Expect = 4e-50
 Identities = 179/204 (87%)
 Strand = Plus / Plus

                                                                       
Query: 228 cgggcgtcgctcttctcgcccaagcctgcggtggccatggacgcgcggccgagcaaggtg 287
           ||||||||||| |||||||| ||||| |||  | ||| ||||||| |||||  |||||||
Sbjct: 231 cgggcgtcgctgttctcgccgaagccggcgacgcccaaggacgcgaggccggccaaggtg 290

                                                                       
Query: 288 caggagctgcacgtgtacgagctcaacgagcgcgaccgcgagagccccgcctacctccgg 347
           |||||| ||  |||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 291 caggagatgttcgtgtacgagatcaacgagcgcgaccgcgagagccccgcctacctccgc 350

                                                                       
Query: 348 ctgagcgccaaccagagccagaacgcgctcggcgacctcgtccccttcaccaacaaggtg 407
           || |||||||| ||||   ||||||| |||||||| ||||||||||||||||||||| ||
Sbjct: 351 ctcagcgccaagcagacggagaacgccctcggcgatctcgtccccttcaccaacaagctg 410

                                   
Query: 408 tacaacgggagcctggacaagcgg 431
           |||| ||| |||||||||||||||
Sbjct: 411 tacagcggaagcctggacaagcgg 434
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>dbj|AK071443.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091K18, full
           insert sequence
          Length = 1207

 Score =  198 bits (100), Expect = 1e-47
 Identities = 178/204 (87%)
 Strand = Plus / Plus

                                                                       
Query: 228 cgggcgtcgctcttctcgcccaagcctgcggtggccatggacgcgcggccgagcaaggtg 287
           ||||||||||| |||||||| ||||| |||  | ||| ||||||| |||||  |||||||
Sbjct: 272 cgggcgtcgctgttctcgccgaagccggcgacgcccaaggacgcgaggccggccaaggtg 331

                                                                       
Query: 288 caggagctgcacgtgtacgagctcaacgagcgcgaccgcgagagccccgcctacctccgg 347
           |||||| ||  |||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 332 caggagatgttcgtgtacgagatcaacgagcgcgaccgcgagagccccgcctacctccgc 391

                                                                       
Query: 348 ctgagcgccaaccagagccagaacgcgctcggcgacctcgtccccttcaccaacaaggtg 407
            | |||||||| ||||   ||||||| |||||||| ||||||||||||||||||||| ||
Sbjct: 392 atcagcgccaagcagacggagaacgccctcggcgatctcgtccccttcaccaacaagctg 451

                                   
Query: 408 tacaacgggagcctggacaagcgg 431
           |||| ||| |||||||||||||||
Sbjct: 452 tacagcggaagcctggacaagcgg 475
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>dbj|AK060025.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-B07, full
           insert sequence
          Length = 1059

 Score =  198 bits (100), Expect = 1e-47
 Identities = 178/204 (87%)
 Strand = Plus / Plus

                                                                       
Query: 228 cgggcgtcgctcttctcgcccaagcctgcggtggccatggacgcgcggccgagcaaggtg 287
           ||||||||||| |||||||| ||||| |||  | ||| ||||||| ||||   |||||||
Sbjct: 161 cgggcgtcgctgttctcgccgaagccggcgacgcccaaggacgcgaggccagccaaggtg 220

                                                                       
Query: 288 caggagctgcacgtgtacgagctcaacgagcgcgaccgcgagagccccgcctacctccgg 347
           |||||| ||  |||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 221 caggagatgttcgtgtacgagatcaacgagcgcgaccgcgagagccccgcctacctccgc 280

                                                                       
Query: 348 ctgagcgccaaccagagccagaacgcgctcggcgacctcgtccccttcaccaacaaggtg 407
           || |||||||| ||||   ||||||| |||||||| ||||||||||||||||||||| ||
Sbjct: 281 ctcagcgccaagcagacggagaacgccctcggcgatctcgtccccttcaccaacaagctg 340

                                   
Query: 408 tacaacgggagcctggacaagcgg 431
           |||| ||| |||||||||||||||
Sbjct: 341 tacagcggaagcctggacaagcgg 364
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  180 bits (91), Expect = 2e-42
 Identities = 157/179 (87%)
 Strand = Plus / Minus

                                                                            
Query: 228      cgggcgtcgctcttctcgcccaagcctgcggtggccatggacgcgcggccgagcaaggtg 287
                ||||||||||| |||||||| ||||| |||  | ||| ||||||| |||||  |||||||
Sbjct: 18298704 cgggcgtcgctgttctcgccgaagccggcgacgcccaaggacgcgaggccggccaaggtg 18298645

                                                                            
Query: 288      caggagctgcacgtgtacgagctcaacgagcgcgaccgcgagagccccgcctacctccgg 347
                |||||| ||  |||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 18298644 caggagatgttcgtgtacgagatcaacgagcgcgaccgcgagagccccgcctacctccgc 18298585

                                                                           
Query: 348      ctgagcgccaaccagagccagaacgcgctcggcgacctcgtccccttcaccaacaaggt 406
                || |||||||| ||||   ||||||| |||||||| |||||||||||||||||||||||
Sbjct: 18298584 ctcagcgccaagcagacggagaacgccctcggcgatctcgtccccttcaccaacaaggt 18298526
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>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete
             sequence
          Length = 159579

 Score =  180 bits (91), Expect = 2e-42
 Identities = 157/179 (87%)
 Strand = Plus / Minus

                                                                         
Query: 228   cgggcgtcgctcttctcgcccaagcctgcggtggccatggacgcgcggccgagcaaggtg 287
             ||||||||||| |||||||| ||||| |||  | ||| ||||||| |||||  |||||||
Sbjct: 65135 cgggcgtcgctgttctcgccgaagccggcgacgcccaaggacgcgaggccggccaaggtg 65076

                                                                         
Query: 288   caggagctgcacgtgtacgagctcaacgagcgcgaccgcgagagccccgcctacctccgg 347
             |||||| ||  |||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 65075 caggagatgttcgtgtacgagatcaacgagcgcgaccgcgagagccccgcctacctccgc 65016

                                                                        
Query: 348   ctgagcgccaaccagagccagaacgcgctcggcgacctcgtccccttcaccaacaaggt 406
             || |||||||| ||||   ||||||| |||||||| |||||||||||||||||||||||
Sbjct: 65015 ctcagcgccaagcagacggagaacgccctcggcgatctcgtccccttcaccaacaaggt 64957
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  180 bits (91), Expect = 2e-42
 Identities = 157/179 (87%)
 Strand = Plus / Minus

                                                                            
Query: 228      cgggcgtcgctcttctcgcccaagcctgcggtggccatggacgcgcggccgagcaaggtg 287
                ||||||||||| |||||||| ||||| |||  | ||| ||||||| |||||  |||||||
Sbjct: 18292704 cgggcgtcgctgttctcgccgaagccggcgacgcccaaggacgcgaggccggccaaggtg 18292645

                                                                            
Query: 288      caggagctgcacgtgtacgagctcaacgagcgcgaccgcgagagccccgcctacctccgg 347
                |||||| ||  |||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 18292644 caggagatgttcgtgtacgagatcaacgagcgcgaccgcgagagccccgcctacctccgc 18292585

                                                                           
Query: 348      ctgagcgccaaccagagccagaacgcgctcggcgacctcgtccccttcaccaacaaggt 406
                || |||||||| ||||   ||||||| |||||||| |||||||||||||||||||||||
Sbjct: 18292584 ctcagcgccaagcagacggagaacgccctcggcgatctcgtccccttcaccaacaaggt 18292526
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>gb|AC105225.5| Homo sapiens chromosome 8, clone RP11-775E18, complete sequence
          Length = 135609

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 57    ccgtcgccaccaccaccaagagg 79
             |||||||||||||||||||||||
Sbjct: 10426 ccgtcgccaccaccaccaagagg 10448
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>gb|AC144578.2| Homo sapiens chromosome 8, clone XXfos-802716D4, complete sequence
          Length = 38207

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 57    ccgtcgccaccaccaccaagagg 79
             |||||||||||||||||||||||
Sbjct: 23661 ccgtcgccaccaccaccaagagg 23683
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>gb|AC135075.5| Homo sapiens chromosome 8, clone RP11-557G24, complete sequence
          Length = 72016

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 57    ccgtcgccaccaccaccaagagg 79
             |||||||||||||||||||||||
Sbjct: 22949 ccgtcgccaccaccaccaagagg 22971
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>gb|DQ314585.1| Ipomoea nil chloroplast allene oxide cyclase precursor (AOC) mRNA,
           complete cds; nuclear gene for chloroplast product
          Length = 856

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 299 cgtgtacgagctcaacgagcgcgaccg 325
           |||||||||| ||||||||||||||||
Sbjct: 262 cgtgtacgagatcaacgagcgcgaccg 288
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>gb|AY154776.1| Physcomitrella patens allene oxide cyclase (aoc) mRNA, complete cds
          Length = 958

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 285 gtgcaggagctgcacgtgtacgagctcaacgagcgcgaccg 325
           ||||||||||||   ||||||||| |||| |||||||||||
Sbjct: 186 gtgcaggagctgtttgtgtacgagatcaatgagcgcgaccg 226
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>gb|AC156593.2| Laccaria bicolor clone JGIAHZW-12X, complete sequence
          Length = 39354

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    ccaccaccaccaagaggcaac 83
             |||||||||||||||||||||
Sbjct: 25089 ccaccaccaccaagaggcaac 25109
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>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome
          Length = 195859

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 280    gcaaggtgcaggagctgcacg 300
              |||||||||||||||||||||
Sbjct: 161598 gcaaggtgcaggagctgcacg 161578
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 80      caacaccgccatggcagcgcc 100
               |||||||||||||||||||||
Sbjct: 6291040 caacaccgccatggcagcgcc 6291020



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 370      acgcgctcggcgacctcgtc 389
                ||||||||||||||||||||
Sbjct: 22965316 acgcgctcggcgacctcgtc 22965335
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>dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1734_E04
          Length = 101439

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    caacaccgccatggcagcgcc 100
             |||||||||||||||||||||
Sbjct: 77177 caacaccgccatggcagcgcc 77157
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>emb|AJ508993.1|PPA508993 Physcomitrella patens mRNA for allene oxide cyclase (aoc1 gene)
          Length = 779

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 285 gtgcaggagctgcacgtgtacgagctcaacgagcgcgaccg 325
           ||||||||||||   ||||||||| |||| |||||||||||
Sbjct: 94  gtgcaggagctgtttgtgtacgagatcaatgagcgcgaccg 134
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>gb|BC090853.1| Homo sapiens homeobox D8, mRNA (cDNA clone MGC:102704
           IMAGE:6180525), complete cds
          Length = 1947

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 214 gcggcggccccgtgcgggcgtcgct 238
           |||||||||||| ||||||||||||
Sbjct: 313 gcggcggccccgggcgggcgtcgct 289
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 286     tgcaggagctgcacgtgtacgagct 310
               |||||| ||||||||||||||||||
Sbjct: 3613840 tgcaggcgctgcacgtgtacgagct 3613816
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>emb|AL672244.15| Mouse DNA sequence from clone RP23-43I8 on chromosome 16, complete
             sequence
          Length = 243114

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    gccatggcagcgcccccctcc 107
             |||||||||||||||||||||
Sbjct: 76630 gccatggcagcgcccccctcc 76650
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>ref|XM_482852.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2096

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 370 acgcgctcggcgacctcgtc 389
           ||||||||||||||||||||
Sbjct: 607 acgcgctcggcgacctcgtc 626
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>ref|XM_507264.1| PREDICTED Oryza sativa (japonica cultivar-group), P0104B02.35 mRNA
          Length = 2284

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 370 acgcgctcggcgacctcgtc 389
           ||||||||||||||||||||
Sbjct: 795 acgcgctcggcgacctcgtc 814
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 269    cgcgcggccgagcaaggtgcagga 292
              ||||| ||||||||||||||||||
Sbjct: 409532 cgcgccgccgagcaaggtgcagga 409509
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>gb|AC004509.1| Homo sapiens chromosome 16, cosmid clone RT191 (LANL), complete
             sequence
          Length = 39595

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   gcagggtcagcgtcagctcg 203
             ||||||||||||||||||||
Sbjct: 20480 gcagggtcagcgtcagctcg 20461
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>ref|XM_864831.1| PREDICTED: Bos taurus similar to TRK-fused gene (LOC614393), mRNA
          Length = 1831

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 206 caggaggtgcggcggccccg 225
           ||||||||||||||||||||
Sbjct: 14  caggaggtgcggcggccccg 33
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>ref|XM_612436.2| PREDICTED: Bos taurus similar to ets variant gene 4 (E1A enhancer
            binding protein, E1AF), transcript variant 1 (LOC533129),
            mRNA
          Length = 2196

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 326  cgagagccccgcctacctcc 345
            ||||||||||||||||||||
Sbjct: 1461 cgagagccccgcctacctcc 1480
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>ref|XM_879937.1| PREDICTED: Bos taurus similar to ets variant gene 4 (E1A enhancer
            binding protein, E1AF), transcript variant 4 (LOC533129),
            mRNA
          Length = 2200

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 326  cgagagccccgcctacctcc 345
            ||||||||||||||||||||
Sbjct: 1465 cgagagccccgcctacctcc 1484
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>ref|XM_867264.1| PREDICTED: Bos taurus similar to ets variant gene 4 (E1A enhancer
            binding protein, E1AF), transcript variant 2 (LOC533129),
            mRNA
          Length = 2352

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 326  cgagagccccgcctacctcc 345
            ||||||||||||||||||||
Sbjct: 1617 cgagagccccgcctacctcc 1636
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>ref|XM_879886.1| PREDICTED: Bos taurus similar to ets variant gene 4 (E1A enhancer
            binding protein, E1AF), transcript variant 3 (LOC533129),
            mRNA
          Length = 2034

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 326  cgagagccccgcctacctcc 345
            ||||||||||||||||||||
Sbjct: 1299 cgagagccccgcctacctcc 1318
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>gb|AC164562.4| Mus musculus BAC clone RP23-148G12 from chromosome 3, complete sequence
          Length = 202591

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    gcgggccgcgagggctgggc 177
              ||||||||||||||||||||
Sbjct: 164764 gcgggccgcgagggctgggc 164783
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>ref|XM_195466.5| PREDICTED: Mus musculus gene model 659, (NCBI) (LOC271944), mRNA
          Length = 1155

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 158 gcgggccgcgagggctgggc 177
           ||||||||||||||||||||
Sbjct: 427 gcgggccgcgagggctgggc 446
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>ref|XM_001001226.1| PREDICTED: Mus musculus gene model 659, (NCBI) (LOC271944), mRNA
          Length = 1310

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 158 gcgggccgcgagggctgggc 177
           ||||||||||||||||||||
Sbjct: 427 gcgggccgcgagggctgggc 446
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>gb|AC122808.3| Mus musculus BAC clone RP23-298M23 from 3, complete sequence
          Length = 190130

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    gcgggccgcgagggctgggc 177
              ||||||||||||||||||||
Sbjct: 172969 gcgggccgcgagggctgggc 172950
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>emb|AL353611.19| Human DNA sequence from clone RP11-447M12 on chromosome 9 Contains the
             FCN1 gene for ficolin (collagen/fibrinogen domain
             containing) 1 and a novel gene, complete sequence
          Length = 104972

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   cgagggctgggctcggtggc 185
             ||||||||||||||||||||
Sbjct: 52885 cgagggctgggctcggtggc 52866
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 256     cggtggccatggacgcgcggccga 279
               |||||||||||||||||| |||||
Sbjct: 2241102 cggtggccatggacgcgccgccga 2241125
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>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome
          Length = 230138

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    cgctcggcgacctcgtcccc 392
              ||||||||||||||||||||
Sbjct: 128325 cgctcggcgacctcgtcccc 128306
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>gb|S48582.1| style-specific extensin-like gene [Nicotiana alata, style, Genomic,
           1056 nt]
          Length = 1056

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  agccgtcgccaccaccacca 74
           ||||||||||||||||||||
Sbjct: 411 agccgtcgccaccaccacca 430
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 370      acgcgctcggcgacctcgtc 389
                ||||||||||||||||||||
Sbjct: 16768513 acgcgctcggcgacctcgtc 16768532
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>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0047B10
          Length = 158798

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 370    acgcgctcggcgacctcgtc 389
              ||||||||||||||||||||
Sbjct: 117207 acgcgctcggcgacctcgtc 117226
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>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0104B02
          Length = 169588

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 370    acgcgctcggcgacctcgtc 389
              ||||||||||||||||||||
Sbjct: 139154 acgcgctcggcgacctcgtc 139173
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>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0470B03
          Length = 163371

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 370   acgcgctcggcgacctcgtc 389
             ||||||||||||||||||||
Sbjct: 25044 acgcgctcggcgacctcgtc 25063
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>dbj|AK119595.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D09, full
           insert sequence
          Length = 2284

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 370 acgcgctcggcgacctcgtc 389
           ||||||||||||||||||||
Sbjct: 795 acgcgctcggcgacctcgtc 814
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>ref|XM_310728.2| Anopheles gambiae str. PEST ENSANGP00000010003
           (ENSANGG00000007514), partial mRNA
          Length = 1533

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 284 ggtgcaggagctgcacgtgt 303
           ||||||||||||||||||||
Sbjct: 894 ggtgcaggagctgcacgtgt 913
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>dbj|AK106796.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-B04, full
           insert sequence
          Length = 2096

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 370 acgcgctcggcgacctcgtc 389
           ||||||||||||||||||||
Sbjct: 607 acgcgctcggcgacctcgtc 626
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>gb|AY461847.1| Glycine max endo-1,3-beta-glucanase mRNA, complete cds
          Length = 1285

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 73 caagaggcaacaccgccatg 92
          ||||||||||||||||||||
Sbjct: 70 caagaggcaacaccgccatg 89


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,768,079
Number of Sequences: 3902068
Number of extensions: 2768079
Number of successful extensions: 65638
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65177
Number of HSP's gapped (non-prelim): 461
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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