>ref|NM_193768.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1563

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 412 ggcctgcccagcgttgttggcatcgcgcacctggcggtgtcgctgggcatcgtg 465
           ||||| |||||| | || || ||||||||||||  |||||||||||| ||||||
Sbjct: 286 ggcctacccagcctcgtcgggatcgcgcacctgctggtgtcgctggggatcgtg 339



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 345 tcgccaccgcctcatcgcccc 365
           |||||||||||||||||||||
Sbjct: 204 tcgccaccgcctcatcgcccc 224

>emb|AL591981.1| Listeria monocytogenes strain EGD, complete genome, segment 9/12
          Length = 347050

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 217    ggatgcggatgccgacgccgacgcgg 242
              |||||||||||| |||||||||||||
Sbjct: 118563 ggatgcggatgctgacgccgacgcgg 118538

>emb|AL596170.1| Listeria innocua Clip11262 complete genome, segment 8/12
          Length = 313450

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 217    ggatgcggatgccgacgccgacgcgg 242
              ||||||||||||||||||||| ||||
Sbjct: 135779 ggatgcggatgccgacgccgatgcgg 135754



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 217    ggatgcggatgccgacgccga 237
              |||||||||||||||||||||
Sbjct: 135695 ggatgcggatgccgacgccga 135675



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 218    gatgcggatgccgacgccgacgcgg 242
              |||||||||||||||||||| ||||
Sbjct: 135352 gatgcggatgccgacgccgatgcgg 135328



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 217    ggatgcggatgccgacgccgacgc 240
              |||||||||||| |||||||||||
Sbjct: 135755 ggatgcggatgctgacgccgacgc 135732



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 217    ggatgcggatgccgacgccgacgc 240
              |||||||||||| |||||||||||
Sbjct: 135125 ggatgcggatgctgacgccgacgc 135102

>dbj|AK072161.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132P06, full
           insert sequence
          Length = 2716

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 412 ggcctgcccagcgttgttggcatcgcgcacctggcggtgtcgctgggcatcgtg 465
           ||||| |||||| | || || ||||||||||||  |||||||||||| ||||||
Sbjct: 368 ggcctacccagcctcgtcgggatcgcgcacctgctggtgtcgctggggatcgtg 421



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 345 tcgccaccgcctcatcgcccc 365
           |||||||||||||||||||||
Sbjct: 286 tcgccaccgcctcatcgcccc 306

>gb|BT018687.1| Zea mays clone EL01N0512A10.d mRNA sequence
          Length = 1829

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 222 cggatgccgacgccgacgcgg 242
           |||||||||||||||||||||
Sbjct: 68  cggatgccgacgccgacgcgg 48

>gb|AC104073.3| Homo sapiens BAC clone RP11-328P23 from 7, complete sequence
          Length = 178670

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 310    gctttcatggcattggctccc 330
              |||||||||||||||||||||
Sbjct: 112586 gctttcatggcattggctccc 112566

>gb|AC092685.2| Homo sapiens BAC clone RP11-746P2 from 7, complete sequence
          Length = 183263

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 310   gctttcatggcattggctccc 330
             |||||||||||||||||||||
Sbjct: 15337 gctttcatggcattggctccc 15317

>emb|X79979.1|SGHRDT S.griseus hrdT gene
          Length = 2329

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 230  gacgccgacgcggcctccccc 250
            |||||||||||||||||||||
Sbjct: 1206 gacgccgacgcggcctccccc 1226

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 345      tcgccaccgcctcatcgcccc 365
                |||||||||||||||||||||
Sbjct: 18012852 tcgccaccgcctcatcgcccc 18012832



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 433      atcgcgcacctggcggtgtcgctgggcatcgtg 465
                ||||||||||||  |||||||||||| ||||||
Sbjct: 18012651 atcgcgcacctgctggtgtcgctggggatcgtg 18012619



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 218     gatgcggatgccgacgccgacgcg 241
               ||||| ||||||||||||||||||
Sbjct: 6820292 gatgccgatgccgacgccgacgcg 6820269

>dbj|AP003213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0054L14
          Length = 150022

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 345   tcgccaccgcctcatcgcccc 365
             |||||||||||||||||||||
Sbjct: 40093 tcgccaccgcctcatcgcccc 40073



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 433   atcgcgcacctggcggtgtcgctgggcatcgtg 465
             ||||||||||||  |||||||||||| ||||||
Sbjct: 39892 atcgcgcacctgctggtgtcgctggggatcgtg 39860

>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0520B06
          Length = 142667

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 345    tcgccaccgcctcatcgcccc 365
              |||||||||||||||||||||
Sbjct: 132687 tcgccaccgcctcatcgcccc 132667



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 433    atcgcgcacctggcggtgtcgctgggcatcgtg 465
              ||||||||||||  |||||||||||| ||||||
Sbjct: 132486 atcgcgcacctgctggtgtcgctggggatcgtg 132454

>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 218     gatgcggatgccgacgccgacgcgg 242
               ||||||||||| |||||||||||||
Sbjct: 1071363 gatgcggatgcggacgccgacgcgg 1071387



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 218     gatgcggatgccgacgccgacgcgg 242
               ||||||||||| |||||||||||||
Sbjct: 1070787 gatgcggatgcggacgccgacgcgg 1070811



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 217     ggatgcggatgccgacgccgacgc 240
               |||||||||||| |||||||||||
Sbjct: 1070834 ggatgcggatgcggacgccgacgc 1070857



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 217     ggatgcggatgccgacgccgacgc 240
               |||||||||||||||||| |||||
Sbjct: 1070726 ggatgcggatgccgacgcggacgc 1070749

>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 218     gatgcggatgccgacgccgacgcgg 242
               |||||||||||||||||||| ||||
Sbjct: 1850037 gatgcggatgccgacgccgatgcgg 1850013

>ref|NM_188532.1| Oryza sativa (japonica cultivar-group), Ozsa8201 predicted mRNA
          Length = 1413

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 218 gatgcggatgccgacgccgacgcg 241
           ||||| ||||||||||||||||||
Sbjct: 113 gatgccgatgccgacgccgacgcg 136

>gb|AC008138.5| Drosophila melanogaster clone BACR27A15, complete sequence
          Length = 178208

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   ccaccgcctcatcgccccca 367
             ||||||||||||||||||||
Sbjct: 58218 ccaccgcctcatcgccccca 58237

>gb|AE009051.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 77 of
            256 of the complete sequence
          Length = 10789

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 344  ttcgccaccgcctcatcgcc 363
            ||||||||||||||||||||
Sbjct: 8245 ttcgccaccgcctcatcgcc 8226

>ref|XM_538580.2| PREDICTED: Canis familiaris similar to sequestosome 1 (LOC481459),
            mRNA
          Length = 2067

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 286  tcctcgggcggccccgactc 305
            ||||||||||||||||||||
Sbjct: 1211 tcctcgggcggccccgactc 1192

>emb|AL121929.17|HSBA416N2 Human DNA sequence from clone RP11-416N2 on chromosome 10 Contains the 3'
              end of the NEURL gene for neuralized-like (Drosophila), the
              3' end of the SH3MD1 gene for SH3 multiple domains 1 and
              seven CpG islands, complete sequence
          Length = 203262

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 37     tctgcttctgctccactccactgg 60
              ||||||||| ||||||||||||||
Sbjct: 115395 tctgcttctcctccactccactgg 115418

>ref|XM_780259.1| PREDICTED: Strongylocentrotus purpuratus similar to CUB and sushi
           multiple domains protein 1 precursor (LOC580186), mRNA
          Length = 3285

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 37  tctgcttctgctccactcca 56
           ||||||||||||||||||||
Sbjct: 604 tctgcttctgctccactcca 623

>gb|AC037487.12| Homo sapiens chromosome 17, clone RP11-583F2, complete sequence
          Length = 176807

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 143  ccgcgcgcccggccgcggct 162
            ||||||||||||||||||||
Sbjct: 3965 ccgcgcgcccggccgcggct 3984

>gb|AC015821.9| Homo sapiens chromosome 17, clone RP11-160O5, complete sequence
          Length = 160184

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   ccgcgcgcccggccgcggct 162
             ||||||||||||||||||||
Sbjct: 92818 ccgcgcgcccggccgcggct 92837

>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 344    ttcgccaccgcctcatcgcc 363
              ||||||||||||||||||||
Sbjct: 849447 ttcgccaccgcctcatcgcc 849428

>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 444     ggcggtgtcgctgggcatcg 463
               ||||||||||||||||||||
Sbjct: 2543468 ggcggtgtcgctgggcatcg 2543449

>gb|BC050878.1| Mus musculus, clone IMAGE:6512811, mRNA
          Length = 1845

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 17  ccgctgcttccgtctccgtttctgcttctgct 48
           |||||||||||| ||| | |||||||||||||
Sbjct: 458 ccgctgcttccgcctctgcttctgcttctgct 427

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 225     atgccgacgccgacgcggcc 244
               ||||||||||||||||||||
Sbjct: 5026302 atgccgacgccgacgcggcc 5026283

>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 75      gtcgtccatggccgcgacga 94
               ||||||||||||||||||||
Sbjct: 1152675 gtcgtccatggccgcgacga 1152656

>dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0443E05
          Length = 176935

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 218    gatgcggatgccgacgccgacgcg 241
              ||||| ||||||||||||||||||
Sbjct: 172444 gatgccgatgccgacgccgacgcg 172421

>dbj|AP002835.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0417G05
          Length = 147803

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 218    gatgcggatgccgacgccgacgcg 241
              ||||| ||||||||||||||||||
Sbjct: 102353 gatgccgatgccgacgccgacgcg 102330

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 339     cgcccttcgccaccgcctca 358
               ||||||||||||||||||||
Sbjct: 2379231 cgcccttcgccaccgcctca 2379212

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 154     gccgcggctctcccccgcgc 173
               ||||||||||||||||||||
Sbjct: 1922667 gccgcggctctcccccgcgc 1922648

>gb|AE003632.4| Drosophila melanogaster chromosome 2L, section 41 of 83 of the complete
              sequence
          Length = 244231

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 348    ccaccgcctcatcgccccca 367
              ||||||||||||||||||||
Sbjct: 171298 ccaccgcctcatcgccccca 171317

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 140     cgaccgcgcgcccggccgcg 159
               ||||||||||||||||||||
Sbjct: 3127841 cgaccgcgcgcccggccgcg 3127860

>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    gatgccgacgccgacgcggc 243
              ||||||||||||||||||||
Sbjct: 154753 gatgccgacgccgacgcggc 154772

>gb|AC129222.4| Mus musculus BAC clone RP24-532L14 from 14, complete sequence
          Length = 181469

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 17     ccgctgcttccgtctccgtttctgcttctgct 48
              |||||||||||| ||| | |||||||||||||
Sbjct: 125188 ccgctgcttccgcctctgcttctgcttctgct 125157

>emb|AL671998.10| Mouse DNA sequence from clone RP23-71G11 on chromosome X, complete
             sequence
          Length = 220669

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   cctcccccattctccctgca 262
             ||||||||||||||||||||
Sbjct: 94671 cctcccccattctccctgca 94652


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,867,879
Number of Sequences: 3902068
Number of extensions: 2867879
Number of successful extensions: 68591
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67517
Number of HSP's gapped (non-prelim): 1072
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)