ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart61d09 |
|---|---|
| Clone Library Name | barley_pub |
>TNK1_MOUSE (Q99ML2) Non-receptor tyrosine-protein kinase TNK1 (EC 2.7.10.2)| (Kinase of embryonic stem cells) Length = 666 Score = 32.3 bits (72), Expect = 0.57 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Frame = +1 Query: 31 SSPPVRSTTRATP----DHEPXXXXXXXQPPLACNRGAPSFRHSSRSERD 168 SSPP TRA P D P +PP+ CN P+ H +R +R+ Sbjct: 514 SSPPELRRTRAMPQRLPDLPPRPPDLPPRPPIICNSSQPTQPHKARPKRE 563
>CHM4A_HUMAN (Q9BY43) Charged multivesicular body protein 4a| (Chromatin-modifying protein 4a) (CHMP4a) (Vacuolar protein sorting 7-1) (SNF7-1) (hSnf-1) (SNF7 homolog associated with Alix-2) Length = 222 Score = 31.2 bits (69), Expect = 1.3 Identities = 22/80 (27%), Positives = 35/80 (43%) Frame = +1 Query: 190 MSGVFGRVFGKSKEQSQASALASIDKLSETXXXXXXXXXXXXXXXXXXVEXXXXXXXXXX 369 MSG+ GR+FGK K++ + +I KL ET ++ Sbjct: 1 MSGL-GRLFGKGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQ-TAKKYGTKN 58 Query: 370 XXXXIQCLKRKRLYEQQVEQ 429 +Q L+RK+ +EQQ+ Q Sbjct: 59 KRAALQALRRKKRFEQQLAQ 78
>JHD1_CAEBR (Q60V67) JmjC domain-containing histone demethylation protein 1 (EC| 1.14.11.-) Length = 1063 Score = 30.4 bits (67), Expect = 2.2 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 8/64 (12%) Frame = +1 Query: 7 NSASRFTPSSPPVRSTTRATPDHEPXXXXXXXQPP--------LACNRGAPSFRHSSRSE 162 +S + F+PSS P RS R T D P +A A S RHSS SE Sbjct: 882 SSPAMFSPSSEPRRSNDRRTSDPAVNAMKKGVYMPPMSRQDKMIAEAASASSSRHSSFSE 941 Query: 163 RDPA 174 R P+ Sbjct: 942 RRPS 945
>IRF5_HUMAN (Q13568) Interferon regulatory factor 5 (IRF-5)| Length = 498 Score = 29.6 bits (65), Expect = 3.7 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Frame = -1 Query: 262 RWRPARTPGSA-PWTYRTPCQTPPTWLGPDLPDRAPI 155 +W P P + P T + P PP LGP PD +P+ Sbjct: 164 KWPPTLQPPTLRPPTLQPPTLQPPVVLGPPAPDPSPL 200
>CY1_PARDE (P13627) Cytochrome c1 precursor| Length = 450 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +2 Query: 77 SPADEAAVASPRSRATGERPASDIQADRSAIRQVGA*P 190 +PA+E A P + E PA+D A+ +A + A P Sbjct: 118 APAEEPAAEEPAAEEPAEEPAADAPAEEAAAEEAPAEP 155
>LTBP4_MOUSE (Q8K4G1) Latent transforming growth factor beta-binding protein 4| precursor (LTBP-4) Length = 1666 Score = 28.9 bits (63), Expect = 6.3 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -1 Query: 241 PGSAPWTYRTPCQTPPTWLGPDLPDRAP 158 P S PW P + P W GP++P+ P Sbjct: 561 PESQPWP-EFPLPSIPAWTGPEIPESGP 587
>LAT3_MOUSE (Q8BSM7) Large neutral amino acids transporter small subunit 3| (L-type amino acid transporter 3) (Solute carrier family 43 member 1) Length = 564 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -3 Query: 269 SLSMEASADAWLCSLDLPNTLPNTPDMARP 180 S S+E ADA++ S D+P T TP+ + P Sbjct: 265 SPSLEEGADAFISSPDIPGTSEETPEKSVP 294
>ZIC3_MOUSE (Q62521) Zinc finger protein ZIC 3 (Zinc finger protein of the| cerebellum 3) Length = 466 Score = 28.5 bits (62), Expect = 8.2 Identities = 20/49 (40%), Positives = 24/49 (48%) Frame = +1 Query: 127 GAPSFRHSSRSERDPAGRGLAMSGVFGRVFGKSKEQSQASALASIDKLS 273 GAP RH R+PAG GL FG S + A+A A+ KLS Sbjct: 20 GAP--RHHEMPNREPAGMGL-------NPFGDSTHAAAAAAAAAAFKLS 59
>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -1 Query: 253 PARTPGSAPWTYRTPCQTPPTWLGPDLPDRAPIGL 149 P PG AP + R P + P+W GP+ R G+ Sbjct: 129 PDSKPGGAPSSSRRPLLSSPSWGGPEPEGRTGGGV 163
>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -1 Query: 253 PARTPGSAPWTYRTPCQTPPTWLGPDLPDRAPIGL 149 P PG AP + R P + P+W GP+ R G+ Sbjct: 129 PDSKPGGAPSSSRRPLLSSPSWGGPEPEGRTGGGV 163
>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) (GTP-binding and GTPase activating protein 2) (GGAP2) Length = 1192 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -1 Query: 253 PARTPGSAPWTYRTPCQTPPTWLGPDLPDRAPIGL 149 P PG AP + R P + P+W GP+ R G+ Sbjct: 129 PDSKPGGAPSSSRRPLLSSPSWGGPEPEGRTGGGV 163
>ZIC3_HUMAN (O60481) Zinc finger protein ZIC 3 (Zinc finger protein of the| cerebellum 3) Length = 467 Score = 28.5 bits (62), Expect = 8.2 Identities = 20/49 (40%), Positives = 24/49 (48%) Frame = +1 Query: 127 GAPSFRHSSRSERDPAGRGLAMSGVFGRVFGKSKEQSQASALASIDKLS 273 GAP RH R+PAG GL FG S + A+A A+ KLS Sbjct: 20 GAP--RHHEMPNREPAGMGL-------NPFGDSTHAAAAAAAAAAFKLS 59 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.128 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,370,968 Number of Sequences: 219361 Number of extensions: 869416 Number of successful extensions: 2332 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2134 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2328 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
