>ZF106_HUMAN (Q9H2Y7) Zinc finger protein 106 homolog (Zfp-106) (Zinc finger|
            protein 474)
          Length = 1883

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
 Frame = +3

Query: 117  DRLSHNHRVADDVVSLPTS------RPDASTVPPAPTLSSLQFLPRNLQAFDAAAKAPVA 278
            +R +   + + D   LPT        P +S V P+PT +SLQ           +  AP +
Sbjct: 1136 ERRNSRSQTSIDAALLPTPFFPLFLEPPSSHVSPSPTGASLQITTSPTFQTHGSVPAPDS 1195

Query: 279  SLPVIQTVYQYAKFAKTSPEQGALLPAIPSSSSEDV 386
            S+ +        K    SPEQ   + A+P SS+ +V
Sbjct: 1196 SVQI--------KQEPMSPEQDENVNAVPPSSACNV 1223

>NPW_RAT (Q8K1M5) Neuropeptide W precursor (Preproprotein L8) (PPL8)|
           [Contains: Neuropeptide W-23 (NPW23) (L8); Neuropeptide
           W-30 (NPW30) (L8C)]
          Length = 185

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
 Frame = -1

Query: 342 PVPARSW-------RTWRTGRPSG*LAGTRQAPWLRHRRPGGS 235
           P+PA +W       R    GR SG L G R++P+L  R  GG+
Sbjct: 36  PLPASAWYKHVASPRYHTVGRASGLLMGLRRSPYLWRRALGGA 78

>SYS_DESVH (Q72FH6) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 424

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
 Frame = -3

Query: 340 CSGEV--LANLAYW*TVWMTGRDATGALAAASKAWRFRGRNCRLDSVGAGG-------TV 188
           CSG++   A   Y   VW+ G+D    +++ S    F+ R   +    AGG       T+
Sbjct: 322 CSGDMGFSATKTYDLEVWLPGQDKYREISSCSNCGDFQARRANIRFRPAGGGKPEFVHTL 381

Query: 187 EASGLLVG 164
             SGL VG
Sbjct: 382 NGSGLAVG 389

>SPY_DROME (O44783) Protein sprouty (Spry)|
          Length = 589

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 271 GALAAASKAW-RFRGRNCRLDSVGAGGTVEASGLLVGSETTSSATL 137
           G +    K + RF GR CR   +G GG     G  VGS  ++S+ L
Sbjct: 482 GCMKLCEKCYGRFAGRGCRCQGIGGGGAGSGGG--VGSIGSTSSML 525

>TEGP_BHV1S (Q08098) Probable tegument protein|
          Length = 158

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 123 LSHNHRVADDVVSLPTSRPDASTVPPAPTLS-SLQFLPRNLQAFDAAAKAPVASLP 287
           ++ N+R AD+  + P S P   ++   P L  +++  P + +A   AA AP    P
Sbjct: 22  VNENYRGADEADAAPPSPPPEGSIVSIPILELTIEDAPASAEATGTAAAAPAGRTP 77

>COX15_HUMAN (Q7KZN9) Cytochrome c oxidase assembly protein COX15 homolog|
          Length = 410

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 23/79 (29%), Positives = 37/79 (46%)
 Frame = +3

Query: 195 PPAPTLSSLQFLPRNLQAFDAAAKAPVASLPVIQTVYQYAKFAKTSPEQGALLPAIPSSS 374
           PP   L   Q+LP  L A  AA +A    +       QY+  ++ + + G    ++PS +
Sbjct: 7   PPLRALKGRQYLP--LLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSLPSKA 64

Query: 375 SEDVLYRWHLPDPRACGGS 431
           +E V+ RW L     C G+
Sbjct: 65  AERVVGRWLL----VCSGT 79

>EDEM1_HUMAN (Q92611) ER degradation-enhancing alpha-mannosidase-like 1|
          Length = 657

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 24/71 (33%), Positives = 30/71 (42%)
 Frame = -1

Query: 426 LRTPSGPADASGTKHPPTMRKGWPVTAPPVPARSWRTWRTGRPSG*LAGTRQAPWLRHRR 247
           LR+P GPA  +     P  R G       V   SW      +P G   G  Q+P    RR
Sbjct: 46  LRSPDGPASPTSG---PVGRPGG------VSGPSWL-----QPPG--TGAAQSPRKAPRR 89

Query: 246 PGGSVAGTADW 214
           PG  + G A+W
Sbjct: 90  PGPGMCGPANW 100

>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)|
            (SMART/HDAC1-associated repressor protein)
          Length = 3644

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 8/120 (6%)
 Frame = +3

Query: 36   GSMASFHRPLXXXXXXXXXXXXXIELPDRLSHNHRV---ADDVVSLPTSRPDAST----- 191
            G + ++H P              I L  R   + +V    + + S  +++P  ST     
Sbjct: 3282 GDVRTYHAPAQQLTHTQFPVASSISLASRTKTSAQVPPEGEPLQSTQSAQPAPSTQATQP 3341

Query: 192  VPPAPTLSSLQFLPRNLQAFDAAAKAPVASLPVIQTVYQYAKFAKTSPEQGALLPAIPSS 371
            +PPAP     Q            A+ P   +P +    Q AK  +T   +   LPAIP++
Sbjct: 3342 IPPAPPCQPSQL--------SQPAQPPSGKIPQVS---QEAKGTQTGGVEQTRLPAIPTN 3390

>TMPS2_MOUSE (Q9JIQ8) Transmembrane protease, serine 2 (EC 3.4.21.-)|
           (Epitheliasin) (Plasmic transmembrane protein X)
           [Contains: Transmembrane protease, serine 2
           non-catalytic chain; Transmembrane protease, serine 2
           catalytic chain]
          Length = 490

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -3

Query: 352 NSAPCSGEVLANLAYW*TVWMTGRDATGALAAASKAWRFRGRNCRLDSV--GAGGTVEAS 179
           + APC+ +   +L         G   TGA  AA   WRF   NC    +  G+ GT  +S
Sbjct: 72  SGAPCTSKSKKSLCL---ALALGTVLTGAAVAAVLLWRFWDSNCSTSEMECGSSGTCISS 128

Query: 178 GL 173
            L
Sbjct: 129 SL 130

>EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa|
           SWI2/SNF2-related protein) (Domino homolog) (mDomino)
          Length = 3072

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 14/92 (15%)
 Frame = +3

Query: 180 DASTVPPAPTLSSLQFLPRNLQAFDAAAKAPVASLPVIQTVYQYAKFAKTS--------- 332
           D ST PP    +SL   P  L A    A  P  +LP      Q ++  + S         
Sbjct: 571 DPSTGPPVQNAASLHTPPPQLPARLPPASVPATALPSTLQFSQQSQMVEASTQLQIPVKT 630

Query: 333 PEQGALLPA-----IPSSSSEDVLYRWHLPDP 413
            +  A +PA     +P+ SS+      H+P P
Sbjct: 631 QQLNAPIPAPLPSQLPAPSSQPAQPALHVPMP 662

>TEGU_EHV1B (P28955) Large tegument protein|
          Length = 3421

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +3

Query: 159  SLPTSRPDASTVPPAPTLSSLQFLPRNLQAFDAAAKAPVASLPVIQTVYQ-YAKFAKTSP 335
            ++P S P   T+PPAP L          Q+   AA  P  +LP    + Q  +K A   P
Sbjct: 2538 AVPPSVPAPPTLPPAPPLP---------QSTSKAASGPPPTLPPAPPLPQSTSKAASGPP 2588

Query: 336  EQGALLPAIPSSSSE 380
                  P +P S+S+
Sbjct: 2589 PTLPPAPPLPQSTSK 2603

>RM28_DROME (Q9VMX0) 39S ribosomal protein L28, mitochondrial precursor (L28mt)|
          Length = 302

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 15/55 (27%), Positives = 21/55 (38%)
 Frame = -1

Query: 420 TPSGPADASGTKHPPTMRKGWPVTAPPVPARSWRTWRTGRPSG*LAGTRQAPWLR 256
           TP G    +G K P    KG     P    + WR W+   P+      ++  W R
Sbjct: 5   TPQGVKLLNGWKRPGRFDKGLGAQLPEAYRKFWREWKLTTPAAVHYIPKEQQWER 59

>HRPA_ECOLI (P43329) ATP-dependent RNA helicase hrpA (EC 3.6.1.-)|
          Length = 1300

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 269 ACRVPASHPDGLPVRQVRQDLAGTGGAVTGHPFLIVGG 382
           A R   ++PD LPV Q +QD+     A+  H  +IV G
Sbjct: 66  AARPEITYPDNLPVSQKKQDIL---EAIRDHQVVIVAG 100

>SEC73_SCHPO (O13817) Protein transport protein sec73|
          Length = 1082

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +3

Query: 171 SRPDASTVPPAPTLSSLQFLPRNLQAFDAAAKAPVASLPVIQTVYQYAKFAKTSPEQGAL 350
           SRP +ST+P   TL  L+    ++ +F    +       V QT+   A F+   P     
Sbjct: 291 SRPRSSTIPTQRTLERLRENRSSIFSFRTLRRDDDEC--VAQTIENSALFSDIKPNPTKF 348

Query: 351 LPAIPSSSSED 383
           L ++P  +++D
Sbjct: 349 LSSVPELTADD 359

>COBN_PSEDE (P29929) Aerobic cobaltochelatase cobN subunit (EC 6.6.1.2)|
           (Hydrogenobyrinic acid a,c-diamide cobaltochelatase cobN
           subunit)
          Length = 1275

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 296 DGLPVRQVRQDLAGTGGAVTGHPFLIVGGCFVPLASAG 409
           D LP +Q++ ++AG  G     PF + G   +PLA  G
Sbjct: 470 DSLP-KQIKDEVAGRWGVPEADPFFLDGAFALPLARFG 506

>GATA_LEIXX (Q6AEE8) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 515

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -1

Query: 282 GTRQAPWLRHRRPGGSVAGTADWTASALEAPL 187
           G  + PW   R PGGS  G+A    SA EAPL
Sbjct: 140 GPTRNPWDLERIPGGSGGGSAA-AVSAFEAPL 170

>PTP3_DICDI (P54637) Tyrosine-protein phosphatase 3 (EC 3.1.3.48)|
           (Protein-tyrosine-phosphate phosphohydrolase 3)
          Length = 989

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +3

Query: 138 RVADDVVSLPTSRPDASTVPPAPTLSSLQFLPRNLQAFDAAAKAPVASLPVIQTVYQYAK 317
           R  + + S P  R D S  PP      L F P++ Q+  + +   +ASL +I  + Q  K
Sbjct: 730 RSCEMIKSTPMPRLDISIPPP------LTFTPKDFQSSISPSTDMIASLSIITQMTQTLK 783

Query: 318 F 320
           F
Sbjct: 784 F 784

>CSP_PLACL (P08675) Circumsporozoite protein precursor (CS)|
          Length = 378

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 19/61 (31%), Positives = 23/61 (37%)
 Frame = +2

Query: 176 ARCLNGASSADAVQSAVPATEPPGLRCRSQGACRVPASHPDGLPVRQVRQDLAGTGGAVT 355
           AR  +GA +AD  ++A  A    G R          A   DG P        AG GG   
Sbjct: 167 ARAADGARAADGARAADGARAADGARAADGARAADGARAEDGAPAGNREGGQAGAGGNQA 226

Query: 356 G 358
           G
Sbjct: 227 G 227

>DNAJ2_MYCTU (P63966) Chaperone protein dnaJ 2|
          Length = 382

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 248 LRCRSQGACRVPASHPDGLPVRQVRQDLAGTGGAVTGHPFLIV 376
           +R R + + ++PA   DG+ VR   Q   G GG   G  ++ V
Sbjct: 211 IRARREISVKIPAGVGDGMRVRLAAQGEVGPGGGPAGDLYVEV 253

>DNAJ2_MYCBO (P63967) Chaperone protein dnaJ 2|
          Length = 382

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 248 LRCRSQGACRVPASHPDGLPVRQVRQDLAGTGGAVTGHPFLIV 376
           +R R + + ++PA   DG+ VR   Q   G GG   G  ++ V
Sbjct: 211 IRARREISVKIPAGVGDGMRVRLAAQGEVGPGGGPAGDLYVEV 253

>KLEG1_ECOLI (Q52282) Putative protein kleG|
          Length = 87

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 12/35 (34%)
 Frame = -1

Query: 366 KGWPVTAPPVPA------------RSWRTWRTGRP 298
           K WP +APP P+             S R WR GRP
Sbjct: 11  KSWPCSAPPWPSSRTGWACLPRRCASRRRWRAGRP 45

>POLG_STEVM (P09732) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 1525

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +2

Query: 260 SQGACRVPASHPDGLPVRQVRQDLAGTGGAVTGHPFLIVGG 382
           S G CRVP S    L       DL   G  VT +PF+  GG
Sbjct: 620 SNGPCRVPISVTANL------MDLTPVGRLVTVNPFISTGG 654

>YGF6_YEAST (P53172) Hypothetical 58.1 kDa protein in UBC2-OLE1 intergenic|
           region
          Length = 527

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 420 TPSGPADASGTKHPPTMRKGWPVTAPPVPARSWRTWRTGRPSG 292
           +PS P   S T  PP      P  A P PA   + +RTG+  G
Sbjct: 453 SPSQPQSPSATMPPPQSPSNCP--ASPTPAHFEKEYRTGKLIG 493

>RAI1_MOUSE (Q61818) Retinoic acid-induced protein 1|
          Length = 1889

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 303  RPSG*LAGTRQAPWLRHRRPGGSVAGTAD 217
            R +G   GT ++P L  RRPGGS AG  +
Sbjct: 1321 RVAGAPPGTPRSPALPERRPGGSPAGAEE 1349

>VGLC_BHV1C (P14378) Glycoprotein GIII precursor|
          Length = 521

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -1

Query: 420 TPSG-PADASGTKHPPTMRKGWPVTAPPV---PARSWRTWRTGRPSG 292
           TP G P   S ++H P +    P  APP    P  +    R GRPSG
Sbjct: 74  TPVGTPEPPSVSEHDPPVTNSTPPPAPPEDGRPGGAGNASRDGRPSG 120

>GPSM3_HUMAN (Q9Y4H4) G-protein signaling modulator 3 (Activator of G-protein|
           signaling 4) (Protein G18) (G18.1b)
          Length = 160

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 402 DASGTKHPPTMRKGWPVTAPPVPARSWRTWRTGRPSG*LAGTR 274
           +  G + PP   +GWP      P  + R WR+  PS    GTR
Sbjct: 9   EEDGEQGPPQDEEGWPP-----PNSTTRPWRSAPPSPPPPGTR 46

>B3GT4_RAT (O88178) Beta-1,3-galactosyltransferase 4 (EC 2.4.1.62)|
           (Beta-1,3-GalTase 4) (Beta3Gal-T4) (b3Gal-T4)
           (Ganglioside galactosyltransferase)
           (UDP-galactose:beta-N-acetyl-galactosamine-beta-1,
           3-galactosyltransferase) (GAL-T2)
          Length = 371

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 345 ALLPAIPSSSSEDVLYRWHLPDPRACGGS 431
           +LLPA  S      L R  +P+P+ACGGS
Sbjct: 39  SLLPAPASPGPPLALPRLLIPNPQACGGS 67

>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor|
          Length = 1783

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = +3

Query: 126 SHNHRVADDVVSLPTSRPDASTVPPAPTLSSLQFLPRNLQAFDAAAKAPVASLPVIQTVY 305
           S+  + +D  VSLP  +  A+  P  PT       P    A   AA+AP +++P   T  
Sbjct: 441 SNAKKTSDAAVSLPVGQQPAAEQPHVPTAPG---GPSQTGASAVAAQAPSSAMP---TAA 494

Query: 306 QYAKFAKTSPEQGALLP--AIPSSSSED 383
             A     +    A LP  A+ SS++ +
Sbjct: 495 MAATMGSATIGSAATLPTAAVVSSAAAE 522


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,974,932
Number of Sequences: 219361
Number of extensions: 1174354
Number of successful extensions: 6134
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 5763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6132
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)