Clone Name | bart61d06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 380 ggatgttttgtaccgctggcatctgccggaccc 412 ||||||| |||||| |||||||||||||||||| Sbjct: 30612993 ggatgttctgtacctctggcatctgccggaccc 30613025
>dbj|AP006616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1206D04 Length = 130176 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 380 ggatgttttgtaccgctggcatctgccggaccc 412 ||||||| |||||| |||||||||||||||||| Sbjct: 15649 ggatgttctgtacctctggcatctgccggaccc 15681
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0069C14 Length = 150579 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 380 ggatgttttgtaccgctggcatctgccggaccc 412 ||||||| |||||| |||||||||||||||||| Sbjct: 111556 ggatgttctgtacctctggcatctgccggaccc 111588
>dbj|AK099901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114F10, full insert sequence Length = 1863 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 380 ggatgttttgtaccgctggcatctgccggaccc 412 ||||||| |||||| |||||||||||||||||| Sbjct: 667 ggatgttctgtacctctggcatctgccggaccc 699
>gb|DQ481193.1| Uncultured bacterium clone LT-CLY_39 membrane bound nitrate reductase (narG) gene, partial cds Length = 654 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 74 ggcggtggccgccttcgccgcg 95 |||||||||||||||||||||| Sbjct: 297 ggcggtggccgccttcgccgcg 276
>dbj|AB229943.1| Aspergillus oryzae cDNA, contig sequence: AoEST6829 Length = 499 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 187 caacggtgcctccagcgccgac 208 |||||||||||||||||||||| Sbjct: 365 caacggtgcctccagcgccgac 344
>ref|XM_468939.1| Oryza sativa (japonica cultivar-group), mRNA Length = 981 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tccgccatggcggtggccgcc 86 ||||||||||||||||||||| Sbjct: 25 tccgccatggcggtggccgcc 45
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 tccgccatggcggtggccgcc 86 ||||||||||||||||||||| Sbjct: 19228733 tccgccatggcggtggccgcc 19228713
>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15, complete sequence Length = 150864 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gccgccttcgccgcggtctcc 101 ||||||||||||||||||||| Sbjct: 43367 gccgccttcgccgcggtctcc 43347
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gccgccttcgccgcggtctcc 101 ||||||||||||||||||||| Sbjct: 24154142 gccgccttcgccgcggtctcc 24154122
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 tccgccatggcggtggccgcc 86 ||||||||||||||||||||| Sbjct: 19222774 tccgccatggcggtggccgcc 19222754
>gb|AC008126.9|AC008126 Homo sapiens 12 BAC RPCI11-90E9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173545 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 gtctcctccatagagctaccc 116 ||||||||||||||||||||| Sbjct: 96566 gtctcctccatagagctaccc 96546
>gb|AC137925.2| Oryza sativa chromosome 3 BAC OSJNBb0047D08 genomic sequence, complete sequence Length = 140507 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 tccgccatggcggtggccgcc 86 ||||||||||||||||||||| Sbjct: 12894 tccgccatggcggtggccgcc 12874
>gb|AC135226.4| Oryza sativa chromosome 3 BAC OSJNBa0037J17 genomic sequence, complete sequence Length = 150137 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tccgccatggcggtggccgcc 86 ||||||||||||||||||||| Sbjct: 14729 tccgccatggcggtggccgcc 14749
>dbj|AK119178.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-G07, full insert sequence Length = 1281 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tccgccatggcggtggccgcc 86 ||||||||||||||||||||| Sbjct: 74 tccgccatggcggtggccgcc 94
>emb|AJ459254.1|TAE459254 Triticum aestivum TAA1c gene for fatty acyl coA reductase Length = 2522 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 gcagcatggcttccttccacc 57 ||||||||||||||||||||| Sbjct: 2062 gcagcatggcttccttccacc 2082
>emb|AJ459253.1|TAE459253 Triticum aestivum mRNA for fatty acyl coA reductase (TAA1c gene) Length = 1949 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 gcagcatggcttccttccacc 57 ||||||||||||||||||||| Sbjct: 1280 gcagcatggcttccttccacc 1300
>emb|AJ459250.1|TAE459250 Triticum aestivum TAA1a gene for fatty acyl coA reductase Length = 2448 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 gcagcatggcttccttccacc 57 ||||||||||||||||||||| Sbjct: 2017 gcagcatggcttccttccacc 2037
>emb|AJ459249.1|TAE459249 Triticum aestivum mRNA for fatty acyl coA reductase (TAA1a gene) Length = 1919 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 gcagcatggcttccttccacc 57 ||||||||||||||||||||| Sbjct: 1256 gcagcatggcttccttccacc 1276
>dbj|AK065820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042D13, full insert sequence Length = 1296 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tccgccatggcggtggccgcc 86 ||||||||||||||||||||| Sbjct: 80 tccgccatggcggtggccgcc 100
>dbj|AK060924.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-H10, full insert sequence Length = 1201 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tccgccatggcggtggccgcc 86 ||||||||||||||||||||| Sbjct: 84 tccgccatggcggtggccgcc 104
>dbj|AK060512.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E03, full insert sequence Length = 1299 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 gccgccttcgccgcggtctcc 101 ||||||||||||||||||||| Sbjct: 48 gccgccttcgccgcggtctcc 68
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gcagccaaggcgcctgtcgc 277 |||||||||||||||||||| Sbjct: 28769 gcagccaaggcgcctgtcgc 28788
>ref|NM_001012804.1| Gallus gallus protein kinase C, alpha (PRKCA), mRNA Length = 4592 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 ccttcgatgccgcagccaaggcgc 270 ||||||| |||||||||||||||| Sbjct: 1833 ccttcgaggccgcagccaaggcgc 1810
>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06, complete sequence Length = 142068 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 68 cgccatggcggtggccgccttcgccgcg 95 |||||||||||||| |||| |||||||| Sbjct: 39099 cgccatggcggtggtcgccgtcgccgcg 39072
>gb|BT012916.1| Lycopersicon esculentum clone 114079R, mRNA sequence Length = 2276 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 369 tcatcgtcggaggatgttttgtac 392 |||||||||||||||| ||||||| Sbjct: 221 tcatcgtcggaggatgctttgtac 244
>gb|AC074193.6| Homo sapiens BAC clone RP11-611P20 from 7, complete sequence Length = 44380 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 gccgccttcgccgcggtctcctcc 104 ||||| |||||||||||||||||| Sbjct: 4998 gccgctttcgccgcggtctcctcc 5021
>emb|AJ851529.1| Gallus gallus mRNA for hypothetical protein, clone 5a10 Length = 4592 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 ccttcgatgccgcagccaaggcgc 270 ||||||| |||||||||||||||| Sbjct: 1833 ccttcgaggccgcagccaaggcgc 1810
>gb|AY093685.1| Aeromonas hydrophila strain 4AK4 PHA synthase operon, complete sequence Length = 2920 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 ggtggccgccttcgccgcggtctc 100 ||||||||||||||||||| |||| Sbjct: 2581 ggtggccgccttcgccgcgctctc 2604
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 ttccaccggcccctttccgccatg 74 ||||||||||||| |||||||||| Sbjct: 744953 ttccaccggccccgttccgccatg 744976
>gb|AF468057.1| Aeromonas hydrophila strain 45/90 PHA biosynthesis gene locus Length = 2920 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 ggtggccgccttcgccgcggtctc 100 ||||||||||||||||||| |||| Sbjct: 2581 ggtggccgccttcgccgcgctctc 2604
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ttccgccatggcggtggccg 84 |||||||||||||||||||| Sbjct: 1907968 ttccgccatggcggtggccg 1907949
>gb|AC161467.2| Gallus gallus BAC clone CH261-89H14 from chromosome unknown, complete sequence Length = 308703 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 ccttcgatgccgcagccaaggcgc 270 ||||||| |||||||||||||||| Sbjct: 274924 ccttcgaggccgcagccaaggcgc 274947
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 68 cgccatggcggtggccgccttcgccgcg 95 |||||||||||||| |||| |||||||| Sbjct: 25304495 cgccatggcggtggtcgccgtcgccgcg 25304468
>gb|AE004638.1| Pseudomonas aeruginosa PAO1, section 199 of 529 of the complete genome Length = 11886 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 cgccttcgccgcggtctcct 102 |||||||||||||||||||| Sbjct: 10542 cgccttcgccgcggtctcct 10523
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 tggccgccttcgccgcggtc 98 |||||||||||||||||||| Sbjct: 141401 tggccgccttcgccgcggtc 141382
>gb|AY907551.1| Ruegeria sp. WHOI JT-01 carbon monoxide dehydrogenase form I large subunit (coxL) gene, partial cds Length = 1162 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 ccgccatggcggtggccgcc 86 |||||||||||||||||||| Sbjct: 877 ccgccatggcggtggccgcc 858
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 tggcggtggccgccttcgcc 92 |||||||||||||||||||| Sbjct: 535583 tggcggtggccgccttcgcc 535564
>gb|AY665302.1| Aeromonas hydrophila strain WQ PHA granule-associated protein (phaP), PHA synthase (phaC), and enoyl-CoA hydratase (phaJ) genes, complete cds Length = 2629 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 ggtggccgccttcgccgcggtctc 100 ||||||||||||||||||| |||| Sbjct: 2290 ggtggccgccttcgccgcgctctc 2313
>gb|AY665301.1| Aeromonas hydrophila strain 4AK5 PHA granule-associated protein (phaP), PHA synthase (phaC), and enoyl-CoA hydratase (phaJ) genes, complete cds Length = 2629 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 ggtggccgccttcgccgcggtctc 100 ||||||||||||||||||| |||| Sbjct: 2290 ggtggccgccttcgccgcgctctc 2313
>gb|AC157953.2| Gallus gallus BAC clone CH261-93C23 from chromosome unknown, complete sequence Length = 231813 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 ccttcgatgccgcagccaaggcgc 270 ||||||| |||||||||||||||| Sbjct: 75416 ccttcgaggccgcagccaaggcgc 75439
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 tccgccatggcggtggccgc 85 |||||||||||||||||||| Sbjct: 680555 tccgccatggcggtggccgc 680574 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,702,090 Number of Sequences: 3902068 Number of extensions: 2702090 Number of successful extensions: 56598 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55910 Number of HSP's gapped (non-prelim): 688 length of query: 432 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 410 effective length of database: 17,147,199,772 effective search space: 7030351906520 effective search space used: 7030351906520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)