>DNAA_DESVH (Q729U6) Chromosomal replication initiator protein dnaA|
          Length = 491

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -3

Query: 350 ELVEVAEELQHVGAAAPRE-LQRRAVVAQVLPERVPVPALLRLVPARPH----RRLSRPR 186
           + VEV        AAAPR  L  R  V +V+P   PVP+++  V ARP     RRLS   
Sbjct: 68  DTVEVVVTAGAPAAAAPRPVLAPRPAVVEVVPTAAPVPSVVPAVEARPSGHAPRRLSAET 127

Query: 185 AVHQRSL 165
              Q  L
Sbjct: 128 QQAQEQL 134

>AMP_IMPBA (O24006) Antimicrobial peptides precursor (IB-AMP) [Contains: Basic|
           peptide AMP3 (IB-AMP3); Basic peptide AMP1-1
           (IB-AMP1-1); Basic peptide AMP1-2 (IB-AMP1-2); Basic
           peptide AMP1-3 (IB-AMP1-3); Basic peptide AMP2
           (IB-AMP2); Basic peptide AMP4 (
          Length = 333

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 26/107 (24%), Positives = 36/107 (33%), Gaps = 25/107 (23%)
 Frame = -1

Query: 391 PKKGQPGAWTLVLPNWSR*RRNSSTWA--------------------PLHRESSSGGRWL 272
           P+  +PG +     NW   RR    W                     P++ E   G R  
Sbjct: 226 PEDVEPGQYGRRCCNWGPGRRYCKRWCHNAAEEATLKAFEEEAAREQPVYSEDQWGRRCC 285

Query: 271 -----RRYCPNVCQSRRFCDSYLLGRTAASAAPGLSTSAPCMSVLSS 146
                RRYC   CQS     ++  G   AS    +  + PCM  + S
Sbjct: 286 GWGPGRRYCRRWCQSAEEAAAFQAGEVTASLMLIMFKACPCMGPVPS 332

>MAK5_GIBZE (Q4IBS2) ATP-dependent RNA helicase MAK5 (EC 3.6.1.-)|
          Length = 783

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 1   LLPLFPSRHHTQSPTHPLLAPSARHRSLSPSTAGR 105
           L PL  + + T  P H  +A  ARHRSL   TA R
Sbjct: 522 LTPLLTNLNLTALPLHSQMAQKARHRSLERFTASR 556

>PQQB_SILPO (Q5LTB1) Coenzyme PQQ synthesis protein B (Pyrroloquinoline quinone|
           biosynthesis protein B)
          Length = 295

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
 Frame = +3

Query: 57  RSLGSASISLSLHGRPASSIACLPDLRSKQEDRTDMQGALVDSPGAAEAAVRPSRYESQK 236
           R  G +S+++S  G   S +   PD+R + +DR+ +    +     A   V     +   
Sbjct: 33  RPSGQSSLAVSADGSRWSILNASPDIRQQMQDRSVLHPQGLRGSPVASVLVTNGDID--- 89

Query: 237 RRDWHTFGQYLRNHRPPLELSRCSGAH-VLEFLRYLDQFGKTKV 365
               H  G      + P +L   +G H VLE  R  D   + KV
Sbjct: 90  ----HIAGLLSLREQTPFDLFATAGIHEVLEGNRIFDALARDKV 129

>ITF2_RAT (Q62655) Transcription factor 4 (Immunoglobulin transcription|
           factor 2) (ITF-2) (RITF-2) (SL3-3 enhancer factor 2)
           (SEF-2) (R8f DNA-binding protein)
          Length = 589

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 193 APGLSTSAPCMSVLSSCFDLRSGKHAIDDAGLPW 92
           +PG S+S P  S  SS F ++ G H+ D    PW
Sbjct: 117 SPGYSSSKPAASTFSSSFFMQDGHHSSD----PW 146

>VF11_VACCC (P21052) Protein F11|
          Length = 354

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 168 GALVDSPGAAEAAVRPSRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQ 347
           G ++    + + A   +R  S+KR+D       L  HR  LEL+  +   + EFL Y + 
Sbjct: 211 GFVIPEISSNDNAKIAARILSEKRKDTIAHIDTLIQHRQQLELAYYNSCMLTEFLHYCNS 270

Query: 348 FGKT 359
           +  T
Sbjct: 271 YADT 274

>VF11_VACCP (P29888) Protein F11 (Protein F7)|
          Length = 337

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 168 GALVDSPGAAEAAVRPSRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQ 347
           G ++    + + A   +R  S+KR+D       L  HR  LEL+  +   + EFL Y + 
Sbjct: 207 GFVIPEISSNDNAKIAARILSEKRKDTIAHIDTLIQHRQQLELAYYNSCMLTEFLHYCNS 266

Query: 348 FGKT 359
           +  T
Sbjct: 267 YAGT 270

>KPB1_HUMAN (P46020) Phosphorylase b kinase alpha regulatory chain, skeletal|
           muscle isoform (Phosphorylase kinase alpha M subunit)
          Length = 1223

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 2   SSPSFPLATTPSRPRTRCSLPRLGIDLSLPPRQAGVVD 115
           S PSF L  +P  PR    +P + +++ LP  Q+G VD
Sbjct: 726 SRPSFNLLDSP-HPRQENQVPSVRVEIHLPRDQSGEVD 762

>MELPH_HUMAN (Q9BV36) Melanophilin (Exophilin-3) (Synaptotagmin-like protein 2a)|
           (Slp homolog lacking C2 domains a)
          Length = 600

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 57  RSLGSASISLSLHGR--PASSIACLPDLRSKQEDRTDMQGALVDSPGAAEAAVRPSRYES 230
           +  GSA +  SLHGR    +    + + RS   D+TD  G     PG +EA  +   + S
Sbjct: 130 KRFGSAKVIRSLHGRLQGGAGPELISEERSGDSDQTDEDG----EPG-SEAQAQAQPFGS 184

Query: 231 QKRR 242
           +K+R
Sbjct: 185 KKKR 188

>LRP1B_HUMAN (Q9NZR2) Low-density lipoprotein receptor-related protein 1B|
            precursor (Low-density lipoprotein receptor-related
            protein-deleted in tumor) (LRP-DIT)
          Length = 4599

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 20/68 (29%), Positives = 26/68 (38%)
 Frame = -1

Query: 295  SSSGGRWLRRYCPNVCQSRRFCDSYLLGRTAASAAPGLSTSAPCMSVLSSCFDLRSGKHA 116
            S SG R    +C N CQ+   C   +LGR   S A G  T   C   +   F    G   
Sbjct: 4242 SYSGERCEVNHCSNYCQNGGTCVPSVLGRPTCSCALGF-TGPNCGKTVCEDFCQNGGTCI 4300

Query: 115  IDDAGLPW 92
            +     P+
Sbjct: 4301 VTAGNQPY 4308

>PERT_HUMAN (P07202) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)|
          Length = 933

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = +3

Query: 78  ISLSLHGRPASSIACLPDLRSKQEDRTDMQGAL 176
           I L    RPA+  ACLP  RS     T  QGAL
Sbjct: 272 IQLPEEARPAAGTACLPFYRSSAACGTGDQGAL 304

>HSP1_SAGIM (P24714) Sperm protamine P1 (Cysteine-rich protamine)|
          Length = 49

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 67  ARHRSLSPSTAGRRRRSRACQI*GQSRRTGRTCRERW 177
           +R R       GRRRR R C    + RR  R CR R+
Sbjct: 10  SRSRCYRQRRRGRRRRRRTC----RRRRASRCCRRRY 42

>Y011_CLOPE (Q8XPF2) UPF0182 protein CPE0011|
          Length = 918

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 135 RSKQEDRTDMQGALVDSPGAAEAA-VRPSRYESQKRRDWHTFGQYL 269
           ++  +D T       D  G  EAA +     E+QK  DW T+G+++
Sbjct: 860 KNSNKDETPKTEITSDKSGVKEAADLFNKAIEAQKNGDWATYGEFI 905

>LRP1B_MOUSE (Q9JI18) Low-density lipoprotein receptor-related protein 1B|
            precursor (Low-density lipoprotein receptor-related
            protein-deleted in tumor) (LRP-DIT)
          Length = 4599

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 295  SSSGGRWLRRYCPNVCQSRRFCDSYLLGRTAASAAPGLS 179
            S SGGR    +C N CQ+   C    LGR     A G +
Sbjct: 4242 SYSGGRCEVNHCSNYCQNGGTCIPSTLGRPTCICALGFT 4280

>FTHS_CLOAC (P13419) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 556

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -1

Query: 259 PNVCQSRRFCDSYLLGRTAASAAPGLSTSAPCMSVLSSCFDLRSGKHAIDDAG 101
           PN+ Q+     +++ G   A+ A G      C SVL++   L++G +A+ +AG
Sbjct: 254 PNIVQTLENTPAFIHGGPFANIAHG------CNSVLATKLALKTGDYAVTEAG 300

>SART2_HUMAN (Q9UL01) Squamous cell carcinoma antigen recognized by T-cells 2|
           precursor (SART-2)
          Length = 958

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 222 YESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQ 347
           YE+  RR W    QYL NH+P   ++  +G+ VL    YL +
Sbjct: 189 YETSYRRGWGF--QYLHNHQPTNCMALLTGSLVLMNQGYLQE 228

>MURA_BUCAP (Q8K9G4) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC|
           2.5.1.7) (Enoylpyruvate transferase)
           (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT)
          Length = 417

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 234 KRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAPG 377
           K+++ +     ++ H PP +L++   A +      L +FGK K+  PG
Sbjct: 67  KKKNLYIDTSSIKIHSPPYDLTKQIRASIWMLAPLLIRFGKAKIFLPG 114

>ABF2_STRCX (P82594) Alpha-N-arabinofuranosidase 2 precursor (EC 3.2.1.55)|
           (Alpha-N-arabinofuranosidase II) (Arabinosidase II)
           (Alpha-N-AFase II)
          Length = 328

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
 Frame = +3

Query: 168 GALVDSPGAAEAAVRPSRYES---QKRRD----WHTFGQY 266
           GAL   PG A AA RP+ YE+   ++R D     HT G+Y
Sbjct: 32  GALTAVPGVAHAAPRPAPYENPLVRQRADPHIHRHTDGRY 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,442,719
Number of Sequences: 219361
Number of extensions: 952225
Number of successful extensions: 4034
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4029
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)