>ref|XM_450841.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1644

 Score =  121 bits (61), Expect = 2e-24
 Identities = 91/101 (90%)
 Strand = Plus / Plus

                                                                       
Query: 237 gagttcctctgcccgatactgggcgcgcccatgtccgacccggtgatcctaccgtcgggg 296
           |||||| | ||| |||| |||||||||| |||| |||||||||||||||| |||||||||
Sbjct: 145 gagttcgtgtgctcgatcctgggcgcgctcatggccgacccggtgatcctcccgtcgggg 204

                                                    
Query: 297 cggacgtacgagcgcgcctgcatccaggcatgcgcggagct 337
           | ||||||||||||||||||| ||||||| |||||||||||
Sbjct: 205 cagacgtacgagcgcgcctgcctccaggcctgcgcggagct 245

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  121 bits (61), Expect = 2e-24
 Identities = 91/101 (90%)
 Strand = Plus / Minus

                                                                            
Query: 237      gagttcctctgcccgatactgggcgcgcccatgtccgacccggtgatcctaccgtcgggg 296
                |||||| | ||| |||| |||||||||| |||| |||||||||||||||| |||||||||
Sbjct: 13112270 gagttcgtgtgctcgatcctgggcgcgctcatggccgacccggtgatcctcccgtcgggg 13112211

                                                         
Query: 297      cggacgtacgagcgcgcctgcatccaggcatgcgcggagct 337
                | ||||||||||||||||||| ||||||| |||||||||||
Sbjct: 13112210 cagacgtacgagcgcgcctgcctccaggcctgcgcggagct 13112170

>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0048A13
          Length = 137680

 Score =  121 bits (61), Expect = 2e-24
 Identities = 91/101 (90%)
 Strand = Plus / Minus

                                                                         
Query: 237   gagttcctctgcccgatactgggcgcgcccatgtccgacccggtgatcctaccgtcgggg 296
             |||||| | ||| |||| |||||||||| |||| |||||||||||||||| |||||||||
Sbjct: 34360 gagttcgtgtgctcgatcctgggcgcgctcatggccgacccggtgatcctcccgtcgggg 34301

                                                      
Query: 297   cggacgtacgagcgcgcctgcatccaggcatgcgcggagct 337
             | ||||||||||||||||||| ||||||| |||||||||||
Sbjct: 34300 cagacgtacgagcgcgcctgcctccaggcctgcgcggagct 34260

>ref|NM_188926.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1758

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                       
Query: 236 ggagttcctctgcccgatactgggcgcgcccatgtccgacccggtgatcctaccgtcggg 295
           ||||||||| ||||||||   ||| || |||||| |||||||||| ||||| ||| ||||
Sbjct: 150 ggagttcctgtgcccgatctcgggggcacccatggccgacccggtcatcctgccgccggg 209

                                 
Query: 296 gcggacgtacgagcgcgcctgc 317
           | ||||||||||||||||||||
Sbjct: 210 gaggacgtacgagcgcgcctgc 231



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 396 atacccaacgacgcgcttggagcggccatccggacttggagcgcgcg 442
           |||||||||||||||||  | |||||||| ||||| ||| |||||||
Sbjct: 295 atacccaacgacgcgctcagggcggccatacggacgtggtgcgcgcg 341

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                            
Query: 236      ggagttcctctgcccgatactgggcgcgcccatgtccgacccggtgatcctaccgtcggg 295
                ||||||||| ||||||||   ||| || |||||| |||||||||| ||||| ||| ||||
Sbjct: 20190097 ggagttcctgtgcccgatctcgggggcacccatggccgacccggtcatcctgccgccggg 20190038

                                      
Query: 296      gcggacgtacgagcgcgcctgc 317
                | ||||||||||||||||||||
Sbjct: 20190037 gaggacgtacgagcgcgcctgc 20190016



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 396      atacccaacgacgcgcttggagcggccatccggacttggagcgcgcg 442
                |||||||||||||||||  | |||||||| ||||| ||| |||||||
Sbjct: 20189952 atacccaacgacgcgctcagggcggccatacggacgtggtgcgcgcg 20189906

>dbj|AP005301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0077M12
          Length = 145337

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                         
Query: 236   ggagttcctctgcccgatactgggcgcgcccatgtccgacccggtgatcctaccgtcggg 295
             ||||||||| ||||||||   ||| || |||||| |||||||||| ||||| ||| ||||
Sbjct: 55883 ggagttcctgtgcccgatctcgggggcacccatggccgacccggtcatcctgccgccggg 55824

                                   
Query: 296   gcggacgtacgagcgcgcctgc 317
             | ||||||||||||||||||||
Sbjct: 55823 gaggacgtacgagcgcgcctgc 55802



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 396   atacccaacgacgcgcttggagcggccatccggacttggagcgcgcg 442
             |||||||||||||||||  | |||||||| ||||| ||| |||||||
Sbjct: 55738 atacccaacgacgcgctcagggcggccatacggacgtggtgcgcgcg 55692

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                          
Query: 273     gacccggtgatcctaccgtcggggcggacgtacgagcgcgcctgcatccaggcatgcgc 331
               ||||||||| || | ||| |||||| ||||| ||||||||||||||||||||| |||||
Sbjct: 7192654 gacccggtggtcgtcccgccggggcagacgttcgagcgcgcctgcatccaggcgtgcgc 7192712

>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0068B06
          Length = 143712

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                        
Query: 273   gacccggtgatcctaccgtcggggcggacgtacgagcgcgcctgcatccaggcatgcgc 331
             ||||||||| || | ||| |||||| ||||| ||||||||||||||||||||| |||||
Sbjct: 70065 gacccggtggtcgtcccgccggggcagacgttcgagcgcgcctgcatccaggcgtgcgc 70123

>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0052G07
          Length = 156207

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                        
Query: 273   gacccggtgatcctaccgtcggggcggacgtacgagcgcgcctgcatccaggcatgcgc 331
             ||||||||| || | ||| |||||| ||||| ||||||||||||||||||||| |||||
Sbjct: 27658 gacccggtggtcgtcccgccggggcagacgttcgagcgcgcctgcatccaggcgtgcgc 27716

>emb|CR847870.16| Zebrafish DNA sequence from clone DKEY-170G11 in linkage group 22,
              complete sequence
          Length = 237985

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 50     ttgcaccaaaagcaccaaagcg 71
              ||||||||||||||||||||||
Sbjct: 153269 ttgcaccaaaagcaccaaagcg 153290

>ref|XM_415585.1| PREDICTED: Gallus gallus similar to dynein, axonemal, heavy
            polypeptide 9 isoform 2; dynein, axonemal, light
            intermediate chain 1; dynein, axonemal, heavy polypeptide
            17-like; ciliary dynein heavy chain (LOC417314), mRNA
          Length = 16433

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 77   gctctgcttgccgctgccgcc 97
            |||||||||||||||||||||
Sbjct: 8958 gctctgcttgccgctgccgcc 8938

>ref|XM_533129.2| PREDICTED: Canis familiaris similar to dynein, axonemal, heavy
            polypeptide 9 isoform 2 (LOC475921), mRNA
          Length = 13625

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 77   gctctgcttgccgctgccgcc 97
            |||||||||||||||||||||
Sbjct: 8445 gctctgcttgccgctgccgcc 8425

>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 41      cgtccattattgcaccaaaagcacc 65
               |||||||||||||||| ||||||||
Sbjct: 3471382 cgtccattattgcacctaaagcacc 3471406

>emb|AJ243806.1|CRE243806 Chlamydomonas reinhardtii dhc1 gene for 1-alpha dynein heavy chain
          Length = 23204

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 77    gctctgcttgccgctgccgcc 97
             |||||||||||||||||||||
Sbjct: 15832 gctctgcttgccgctgccgcc 15812

>emb|BX908748.7| Zebrafish DNA sequence from clone CH211-215D8 in linkage group 18,
              complete sequence
          Length = 212425

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 51     tgcaccaaaagcaccaaagcg 71
              |||||||||||||||||||||
Sbjct: 174772 tgcaccaaaagcaccaaagcg 174752

>ref|NM_001031210.1| Gallus gallus YY1 transcription factor (YY1), mRNA
          Length = 2612

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 74  gctgctctgcttgccgctgccgcc 97
           |||||||| |||||||||||||||
Sbjct: 849 gctgctcttcttgccgctgccgcc 826

>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02,
             complete sequence
          Length = 125650

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   tgcgcggagcttttcgtctc 346
             ||||||||||||||||||||
Sbjct: 41997 tgcgcggagcttttcgtctc 42016

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 124     cgcgcgcatggcgctggaag 143
               ||||||||||||||||||||
Sbjct: 2812888 cgcgcgcatggcgctggaag 2812869

>emb|CR936697.1| Homo sapiens mRNA; cDNA DKFZp686O21113 (from clone DKFZp686O21113)
          Length = 5963

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  cttctgcccttccactccaa 163
            ||||||||||||||||||||
Sbjct: 1629 cttctgcccttccactccaa 1648

>emb|AJ719349.1| Gallus gallus mRNA for hypothetical protein, clone 1i20
          Length = 2612

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 74  gctgctctgcttgccgctgccgcc 97
           |||||||| |||||||||||||||
Sbjct: 849 gctgctcttcttgccgctgccgcc 826

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 327      tgcgcggagcttttcgtctc 346
                ||||||||||||||||||||
Sbjct: 20619957 tgcgcggagcttttcgtctc 20619976

>gb|AC068987.38| Homo sapiens 12 BAC RP11-923I11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 75663

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   cttctgcccttccactccaa 163
             ||||||||||||||||||||
Sbjct: 34166 cttctgcccttccactccaa 34147

>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 122     cgcgcgcgcatggcgctgga 141
               ||||||||||||||||||||
Sbjct: 2976827 cgcgcgcgcatggcgctgga 2976846


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,079,241
Number of Sequences: 3902068
Number of extensions: 3079241
Number of successful extensions: 51062
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50858
Number of HSP's gapped (non-prelim): 204
length of query: 458
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 436
effective length of database: 17,147,199,772
effective search space: 7476179100592
effective search space used: 7476179100592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)