Clone Name | bart61c12 |
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Clone Library Name | barley_pub |
>ref|XM_450841.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1644 Score = 121 bits (61), Expect = 2e-24 Identities = 91/101 (90%) Strand = Plus / Plus Query: 237 gagttcctctgcccgatactgggcgcgcccatgtccgacccggtgatcctaccgtcgggg 296 |||||| | ||| |||| |||||||||| |||| |||||||||||||||| ||||||||| Sbjct: 145 gagttcgtgtgctcgatcctgggcgcgctcatggccgacccggtgatcctcccgtcgggg 204 Query: 297 cggacgtacgagcgcgcctgcatccaggcatgcgcggagct 337 | ||||||||||||||||||| ||||||| ||||||||||| Sbjct: 205 cagacgtacgagcgcgcctgcctccaggcctgcgcggagct 245
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 121 bits (61), Expect = 2e-24 Identities = 91/101 (90%) Strand = Plus / Minus Query: 237 gagttcctctgcccgatactgggcgcgcccatgtccgacccggtgatcctaccgtcgggg 296 |||||| | ||| |||| |||||||||| |||| |||||||||||||||| ||||||||| Sbjct: 13112270 gagttcgtgtgctcgatcctgggcgcgctcatggccgacccggtgatcctcccgtcgggg 13112211 Query: 297 cggacgtacgagcgcgcctgcatccaggcatgcgcggagct 337 | ||||||||||||||||||| ||||||| ||||||||||| Sbjct: 13112210 cagacgtacgagcgcgcctgcctccaggcctgcgcggagct 13112170
>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0048A13 Length = 137680 Score = 121 bits (61), Expect = 2e-24 Identities = 91/101 (90%) Strand = Plus / Minus Query: 237 gagttcctctgcccgatactgggcgcgcccatgtccgacccggtgatcctaccgtcgggg 296 |||||| | ||| |||| |||||||||| |||| |||||||||||||||| ||||||||| Sbjct: 34360 gagttcgtgtgctcgatcctgggcgcgctcatggccgacccggtgatcctcccgtcgggg 34301 Query: 297 cggacgtacgagcgcgcctgcatccaggcatgcgcggagct 337 | ||||||||||||||||||| ||||||| ||||||||||| Sbjct: 34300 cagacgtacgagcgcgcctgcctccaggcctgcgcggagct 34260
>ref|NM_188926.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1758 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 236 ggagttcctctgcccgatactgggcgcgcccatgtccgacccggtgatcctaccgtcggg 295 ||||||||| |||||||| ||| || |||||| |||||||||| ||||| ||| |||| Sbjct: 150 ggagttcctgtgcccgatctcgggggcacccatggccgacccggtcatcctgccgccggg 209 Query: 296 gcggacgtacgagcgcgcctgc 317 | |||||||||||||||||||| Sbjct: 210 gaggacgtacgagcgcgcctgc 231 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Plus Query: 396 atacccaacgacgcgcttggagcggccatccggacttggagcgcgcg 442 ||||||||||||||||| | |||||||| ||||| ||| ||||||| Sbjct: 295 atacccaacgacgcgctcagggcggccatacggacgtggtgcgcgcg 341
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 236 ggagttcctctgcccgatactgggcgcgcccatgtccgacccggtgatcctaccgtcggg 295 ||||||||| |||||||| ||| || |||||| |||||||||| ||||| ||| |||| Sbjct: 20190097 ggagttcctgtgcccgatctcgggggcacccatggccgacccggtcatcctgccgccggg 20190038 Query: 296 gcggacgtacgagcgcgcctgc 317 | |||||||||||||||||||| Sbjct: 20190037 gaggacgtacgagcgcgcctgc 20190016 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Minus Query: 396 atacccaacgacgcgcttggagcggccatccggacttggagcgcgcg 442 ||||||||||||||||| | |||||||| ||||| ||| ||||||| Sbjct: 20189952 atacccaacgacgcgctcagggcggccatacggacgtggtgcgcgcg 20189906
>dbj|AP005301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0077M12 Length = 145337 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 236 ggagttcctctgcccgatactgggcgcgcccatgtccgacccggtgatcctaccgtcggg 295 ||||||||| |||||||| ||| || |||||| |||||||||| ||||| ||| |||| Sbjct: 55883 ggagttcctgtgcccgatctcgggggcacccatggccgacccggtcatcctgccgccggg 55824 Query: 296 gcggacgtacgagcgcgcctgc 317 | |||||||||||||||||||| Sbjct: 55823 gaggacgtacgagcgcgcctgc 55802 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Minus Query: 396 atacccaacgacgcgcttggagcggccatccggacttggagcgcgcg 442 ||||||||||||||||| | |||||||| ||||| ||| ||||||| Sbjct: 55738 atacccaacgacgcgctcagggcggccatacggacgtggtgcgcgcg 55692
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 273 gacccggtgatcctaccgtcggggcggacgtacgagcgcgcctgcatccaggcatgcgc 331 ||||||||| || | ||| |||||| ||||| ||||||||||||||||||||| ||||| Sbjct: 7192654 gacccggtggtcgtcccgccggggcagacgttcgagcgcgcctgcatccaggcgtgcgc 7192712
>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0068B06 Length = 143712 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 273 gacccggtgatcctaccgtcggggcggacgtacgagcgcgcctgcatccaggcatgcgc 331 ||||||||| || | ||| |||||| ||||| ||||||||||||||||||||| ||||| Sbjct: 70065 gacccggtggtcgtcccgccggggcagacgttcgagcgcgcctgcatccaggcgtgcgc 70123
>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0052G07 Length = 156207 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 273 gacccggtgatcctaccgtcggggcggacgtacgagcgcgcctgcatccaggcatgcgc 331 ||||||||| || | ||| |||||| ||||| ||||||||||||||||||||| ||||| Sbjct: 27658 gacccggtggtcgtcccgccggggcagacgttcgagcgcgcctgcatccaggcgtgcgc 27716
>emb|CR847870.16| Zebrafish DNA sequence from clone DKEY-170G11 in linkage group 22, complete sequence Length = 237985 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 50 ttgcaccaaaagcaccaaagcg 71 |||||||||||||||||||||| Sbjct: 153269 ttgcaccaaaagcaccaaagcg 153290
>ref|XM_415585.1| PREDICTED: Gallus gallus similar to dynein, axonemal, heavy polypeptide 9 isoform 2; dynein, axonemal, light intermediate chain 1; dynein, axonemal, heavy polypeptide 17-like; ciliary dynein heavy chain (LOC417314), mRNA Length = 16433 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 gctctgcttgccgctgccgcc 97 ||||||||||||||||||||| Sbjct: 8958 gctctgcttgccgctgccgcc 8938
>ref|XM_533129.2| PREDICTED: Canis familiaris similar to dynein, axonemal, heavy polypeptide 9 isoform 2 (LOC475921), mRNA Length = 13625 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 gctctgcttgccgctgccgcc 97 ||||||||||||||||||||| Sbjct: 8445 gctctgcttgccgctgccgcc 8425
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 41 cgtccattattgcaccaaaagcacc 65 |||||||||||||||| |||||||| Sbjct: 3471382 cgtccattattgcacctaaagcacc 3471406
>emb|AJ243806.1|CRE243806 Chlamydomonas reinhardtii dhc1 gene for 1-alpha dynein heavy chain Length = 23204 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 gctctgcttgccgctgccgcc 97 ||||||||||||||||||||| Sbjct: 15832 gctctgcttgccgctgccgcc 15812
>emb|BX908748.7| Zebrafish DNA sequence from clone CH211-215D8 in linkage group 18, complete sequence Length = 212425 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 tgcaccaaaagcaccaaagcg 71 ||||||||||||||||||||| Sbjct: 174772 tgcaccaaaagcaccaaagcg 174752
>ref|NM_001031210.1| Gallus gallus YY1 transcription factor (YY1), mRNA Length = 2612 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 gctgctctgcttgccgctgccgcc 97 |||||||| ||||||||||||||| Sbjct: 849 gctgctcttcttgccgctgccgcc 826
>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02, complete sequence Length = 125650 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 tgcgcggagcttttcgtctc 346 |||||||||||||||||||| Sbjct: 41997 tgcgcggagcttttcgtctc 42016
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cgcgcgcatggcgctggaag 143 |||||||||||||||||||| Sbjct: 2812888 cgcgcgcatggcgctggaag 2812869
>emb|CR936697.1| Homo sapiens mRNA; cDNA DKFZp686O21113 (from clone DKFZp686O21113) Length = 5963 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 cttctgcccttccactccaa 163 |||||||||||||||||||| Sbjct: 1629 cttctgcccttccactccaa 1648
>emb|AJ719349.1| Gallus gallus mRNA for hypothetical protein, clone 1i20 Length = 2612 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 gctgctctgcttgccgctgccgcc 97 |||||||| ||||||||||||||| Sbjct: 849 gctgctcttcttgccgctgccgcc 826
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 tgcgcggagcttttcgtctc 346 |||||||||||||||||||| Sbjct: 20619957 tgcgcggagcttttcgtctc 20619976
>gb|AC068987.38| Homo sapiens 12 BAC RP11-923I11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 75663 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 cttctgcccttccactccaa 163 |||||||||||||||||||| Sbjct: 34166 cttctgcccttccactccaa 34147
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 cgcgcgcgcatggcgctgga 141 |||||||||||||||||||| Sbjct: 2976827 cgcgcgcgcatggcgctgga 2976846 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,079,241 Number of Sequences: 3902068 Number of extensions: 3079241 Number of successful extensions: 51062 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50858 Number of HSP's gapped (non-prelim): 204 length of query: 458 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 436 effective length of database: 17,147,199,772 effective search space: 7476179100592 effective search space used: 7476179100592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)