ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart61c06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 309 bits (156), Expect = 4e-81 Identities = 301/349 (86%), Gaps = 3/349 (0%) Strand = Plus / Minus Query: 122 gccatggcgcagagggcgctggagctgaccctgatatcgggcaaggacctcaaggacgtg 181 ||||||||||||||| ||||||||||||| ||||| |||| |||||| |||||||||||| Sbjct: 40967026 gccatggcgcagaggacgctggagctgacgctgatctcggccaaggatctcaaggacgtg 40966967 Query: 182 aacctcttctcggccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcc 241 |||||| |||| |||||||| ||||| |||||||||||||| ||||||| ||||| Sbjct: 40966966 aacctcctctccaagatggaggtctacgccgtcgtctcgctctccggcgaccgccgctcg 40966907 Query: 242 cgccagcgcgtcgccaccgaccgctccggcggccgcaacccgacctggaacgccac---g 298 || ||||| |||||||||||||| |||| |||||||||||| | ||||||||| | | Sbjct: 40966906 cggcagcggatcgccaccgaccgcgccggtggccgcaacccggcgtggaacgccgccccg 40966847 Query: 299 gtccggttcgccgtgccggccaacgccgcgggctccgtccacgtgctgctccgcgccaag 358 |||||||| |||| |||||| || |||||| ||| ||||||| || ||||||||| || Sbjct: 40966846 ctccggttcaccgtcccggcctccggcgcgggttccctccacgtcctcctccgcgccgag 40966787 Query: 359 cgcgccctcggcgaccgcgacgtcggcgaggtccacatcccgctctccgagctgctctcc 418 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 40966786 cgcgccctcggcgaccgcgacgtcggcgaggtccacatccccctctcggagctcctctcc 40966727 Query: 419 ggcgcgcccgacggcgccgtgccggntcagttcgtcgcctaccaggtcc 467 ||||| |||||||||||||| || | |||||||| |||||||||||| Sbjct: 40966726 ggcgcccccgacggcgccgtccccgccaagttcgtctcctaccaggtcc 40966678
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09 Length = 142239 Score = 309 bits (156), Expect = 4e-81 Identities = 301/349 (86%), Gaps = 3/349 (0%) Strand = Plus / Minus Query: 122 gccatggcgcagagggcgctggagctgaccctgatatcgggcaaggacctcaaggacgtg 181 ||||||||||||||| ||||||||||||| ||||| |||| |||||| |||||||||||| Sbjct: 3956 gccatggcgcagaggacgctggagctgacgctgatctcggccaaggatctcaaggacgtg 3897 Query: 182 aacctcttctcggccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcc 241 |||||| |||| |||||||| ||||| |||||||||||||| ||||||| ||||| Sbjct: 3896 aacctcctctccaagatggaggtctacgccgtcgtctcgctctccggcgaccgccgctcg 3837 Query: 242 cgccagcgcgtcgccaccgaccgctccggcggccgcaacccgacctggaacgccac---g 298 || ||||| |||||||||||||| |||| |||||||||||| | ||||||||| | | Sbjct: 3836 cggcagcggatcgccaccgaccgcgccggtggccgcaacccggcgtggaacgccgccccg 3777 Query: 299 gtccggttcgccgtgccggccaacgccgcgggctccgtccacgtgctgctccgcgccaag 358 |||||||| |||| |||||| || |||||| ||| ||||||| || ||||||||| || Sbjct: 3776 ctccggttcaccgtcccggcctccggcgcgggttccctccacgtcctcctccgcgccgag 3717 Query: 359 cgcgccctcggcgaccgcgacgtcggcgaggtccacatcccgctctccgagctgctctcc 418 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 3716 cgcgccctcggcgaccgcgacgtcggcgaggtccacatccccctctcggagctcctctcc 3657 Query: 419 ggcgcgcccgacggcgccgtgccggntcagttcgtcgcctaccaggtcc 467 ||||| |||||||||||||| || | |||||||| |||||||||||| Sbjct: 3656 ggcgcccccgacggcgccgtccccgccaagttcgtctcctaccaggtcc 3608
>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423A12 Length = 178649 Score = 309 bits (156), Expect = 4e-81 Identities = 301/349 (86%), Gaps = 3/349 (0%) Strand = Plus / Minus Query: 122 gccatggcgcagagggcgctggagctgaccctgatatcgggcaaggacctcaaggacgtg 181 ||||||||||||||| ||||||||||||| ||||| |||| |||||| |||||||||||| Sbjct: 95451 gccatggcgcagaggacgctggagctgacgctgatctcggccaaggatctcaaggacgtg 95392 Query: 182 aacctcttctcggccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcc 241 |||||| |||| |||||||| ||||| |||||||||||||| ||||||| ||||| Sbjct: 95391 aacctcctctccaagatggaggtctacgccgtcgtctcgctctccggcgaccgccgctcg 95332 Query: 242 cgccagcgcgtcgccaccgaccgctccggcggccgcaacccgacctggaacgccac---g 298 || ||||| |||||||||||||| |||| |||||||||||| | ||||||||| | | Sbjct: 95331 cggcagcggatcgccaccgaccgcgccggtggccgcaacccggcgtggaacgccgccccg 95272 Query: 299 gtccggttcgccgtgccggccaacgccgcgggctccgtccacgtgctgctccgcgccaag 358 |||||||| |||| |||||| || |||||| ||| ||||||| || ||||||||| || Sbjct: 95271 ctccggttcaccgtcccggcctccggcgcgggttccctccacgtcctcctccgcgccgag 95212 Query: 359 cgcgccctcggcgaccgcgacgtcggcgaggtccacatcccgctctccgagctgctctcc 418 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 95211 cgcgccctcggcgaccgcgacgtcggcgaggtccacatccccctctcggagctcctctcc 95152 Query: 419 ggcgcgcccgacggcgccgtgccggntcagttcgtcgcctaccaggtcc 467 ||||| |||||||||||||| || | |||||||| |||||||||||| Sbjct: 95151 ggcgcccccgacggcgccgtccccgccaagttcgtctcctaccaggtcc 95103
>dbj|AK100995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146J24, full insert sequence Length = 1371 Score = 309 bits (156), Expect = 4e-81 Identities = 301/349 (86%), Gaps = 3/349 (0%) Strand = Plus / Plus Query: 122 gccatggcgcagagggcgctggagctgaccctgatatcgggcaaggacctcaaggacgtg 181 ||||||||||||||| ||||||||||||| ||||| |||| |||||| |||||||||||| Sbjct: 114 gccatggcgcagaggacgctggagctgacgctgatctcggccaaggatctcaaggacgtg 173 Query: 182 aacctcttctcggccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcc 241 |||||| |||| |||||||| ||||| |||||||||||||| ||||||| ||||| Sbjct: 174 aacctcctctccaagatggaggtctacgccgtcgtctcgctctccggcgaccgccgctcg 233 Query: 242 cgccagcgcgtcgccaccgaccgctccggcggccgcaacccgacctggaacgccac---g 298 || ||||| |||||||||||||| |||| |||||||||||| | ||||||||| | | Sbjct: 234 cggcagcggatcgccaccgaccgcgccggtggccgcaacccggcgtggaacgccgccccg 293 Query: 299 gtccggttcgccgtgccggccaacgccgcgggctccgtccacgtgctgctccgcgccaag 358 |||||||| |||| |||||| || |||||| ||| ||||||| || ||||||||| || Sbjct: 294 ctccggttcaccgtcccggcctccggcgcgggttccctccacgtcctcctccgcgccgag 353 Query: 359 cgcgccctcggcgaccgcgacgtcggcgaggtccacatcccgctctccgagctgctctcc 418 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 354 cgcgccctcggcgaccgcgacgtcggcgaggtccacatccccctctcggagctcctctcc 413 Query: 419 ggcgcgcccgacggcgccgtgccggntcagttcgtcgcctaccaggtcc 467 ||||| |||||||||||||| || | |||||||| |||||||||||| Sbjct: 414 ggcgcccccgacggcgccgtccccgccaagttcgtctcctaccaggtcc 462
>ref|NM_190041.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1077 Score = 303 bits (153), Expect = 3e-79 Identities = 298/346 (86%), Gaps = 3/346 (0%) Strand = Plus / Plus Query: 125 atggcgcagagggcgctggagctgaccctgatatcgggcaaggacctcaaggacgtgaac 184 |||||||||||| ||||||||||||| ||||| |||| |||||| ||||||||||||||| Sbjct: 1 atggcgcagaggacgctggagctgacgctgatctcggccaaggatctcaaggacgtgaac 60 Query: 185 ctcttctcggccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcccgc 244 ||| |||| |||||||| ||||| |||||||||||||| ||||||| ||||| || Sbjct: 61 ctcctctccaagatggaggtctacgccgtcgtctcgctctccggcgaccgccgctcgcgg 120 Query: 245 cagcgcgtcgccaccgaccgctccggcggccgcaacccgacctggaacgccac---ggtc 301 ||||| |||||||||||||| |||| |||||||||||| | ||||||||| | | || Sbjct: 121 cagcggatcgccaccgaccgcgccggtggccgcaacccggcgtggaacgccgccccgctc 180 Query: 302 cggttcgccgtgccggccaacgccgcgggctccgtccacgtgctgctccgcgccaagcgc 361 |||||| |||| |||||| || |||||| ||| ||||||| || ||||||||| ||||| Sbjct: 181 cggttcaccgtcccggcctccggcgcgggttccctccacgtcctcctccgcgccgagcgc 240 Query: 362 gccctcggcgaccgcgacgtcggcgaggtccacatcccgctctccgagctgctctccggc 421 |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| Sbjct: 241 gccctcggcgaccgcgacgtcggcgaggtccacatccccctctcggagctcctctccggc 300 Query: 422 gcgcccgacggcgccgtgccggntcagttcgtcgcctaccaggtcc 467 || |||||||||||||| || | |||||||| |||||||||||| Sbjct: 301 gcccccgacggcgccgtccccgccaagttcgtctcctaccaggtcc 346
>dbj|AK120801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012M12, full insert sequence Length = 1353 Score = 293 bits (148), Expect = 3e-76 Identities = 300/349 (85%), Gaps = 4/349 (1%) Strand = Plus / Plus Query: 122 gccatggcgcagagggcgctggagctgaccctgatatcgggcaaggacctcaaggacgtg 181 ||||||||||||||| ||||||||||||| ||||| |||| || ||| |||||||||||| Sbjct: 111 gccatggcgcagaggacgctggagctgacgctgatctcggcca-ggatctcaaggacgtg 169 Query: 182 aacctcttctcggccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcc 241 |||||| |||| |||||||| ||||| |||||||||||||| ||||||| ||||| Sbjct: 170 aacctcctctccaagatggaggtctacgccgtcgtctcgctctccggcgaccgccgctcg 229 Query: 242 cgccagcgcgtcgccaccgaccgctccggcggccgcaacccgacctggaacgccac---g 298 || ||||| |||||||||||||| |||| |||||||||||| | ||||||||| | | Sbjct: 230 cggcagcggatcgccaccgaccgcgccggtggccgcaacccggcgtggaacgccgccccg 289 Query: 299 gtccggttcgccgtgccggccaacgccgcgggctccgtccacgtgctgctccgcgccaag 358 |||||||| |||| |||||| || |||||| ||| ||||||| || ||||||||| || Sbjct: 290 ctccggttcaccgtcccggcctccggcgcgggttccctccacgtcctcctccgcgccgag 349 Query: 359 cgcgccctcggcgaccgcgacgtcggcgaggtccacatcccgctctccgagctgctctcc 418 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 350 cgcgccctcggcgaccgcgacgtcggcgaggtccacatccccctctcggagctcctctcc 409 Query: 419 ggcgcgcccgacggcgccgtgccggntcagttcgtcgcctaccaggtcc 467 ||||| |||||||||||||| || | |||||||| |||||||||||| Sbjct: 410 ggcgcccccgacggcgccgtccccgccaagttcgtctcctaccaggtcc 458
>ref|XM_479452.1| Oryza sativa (japonica cultivar-group), mRNA Length = 699 Score = 107 bits (54), Expect = 3e-20 Identities = 166/200 (83%), Gaps = 5/200 (2%) Strand = Plus / Plus Query: 195 ccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcccgccagcgcgtcg 254 |||||||||||||||| |||||||| |||| ||| |||||| | |||||||| || || Sbjct: 71 ccatggaggtgtacgccgtcgtctccgtctccggcaacccgctcgcccgccagtgca-cg 129 Query: 255 c-caccgaccgctccggcggccgcaacccgacctggaacgccacggtccggttcgccgtg 313 | | |||||||| |||||||||||||||||| |||||||||||| ||| ||||||| Sbjct: 130 ctccccgaccgccacggcggccgcaacccgacgtggaacgccacgctccacctcgccgtc 189 Query: 314 ccggccaacgccgcgggctc---cgtccacgtgctgctccgcgccaagcgcgccctcggc 370 || ||| ||| ||||| | | ||||||| || |||||| || |||||||||||||| Sbjct: 190 cccgccgccgcgccgggcgcgttcctccacgtcctcctccgcaccgagcgcgccctcggc 249 Query: 371 gaccgcgacgtcggcgaggt 390 |||||||||||||||||||| Sbjct: 250 gaccgcgacgtcggcgaggt 269
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 107 bits (54), Expect = 3e-20 Identities = 166/200 (83%), Gaps = 5/200 (2%) Strand = Plus / Plus Query: 195 ccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcccgccagcgcgtcg 254 |||||||||||||||| |||||||| |||| ||| |||||| | |||||||| || || Sbjct: 28286203 ccatggaggtgtacgccgtcgtctccgtctccggcaacccgctcgcccgccagtgca-cg 28286261 Query: 255 c-caccgaccgctccggcggccgcaacccgacctggaacgccacggtccggttcgccgtg 313 | | |||||||| |||||||||||||||||| |||||||||||| ||| ||||||| Sbjct: 28286262 ctccccgaccgccacggcggccgcaacccgacgtggaacgccacgctccacctcgccgtc 28286321 Query: 314 ccggccaacgccgcgggctc---cgtccacgtgctgctccgcgccaagcgcgccctcggc 370 || ||| ||| ||||| | | ||||||| || |||||| || |||||||||||||| Sbjct: 28286322 cccgccgccgcgccgggcgcgttcctccacgtcctcctccgcaccgagcgcgccctcggc 28286381 Query: 371 gaccgcgacgtcggcgaggt 390 |||||||||||||||||||| Sbjct: 28286382 gaccgcgacgtcggcgaggt 28286401 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 322 cgccgcgggctccgtccacgtgctgctccgcgccaagcgcgccctcggcgaccgcgacgt 381 |||||| |||| | ||||||| || ||||||||| ||||| ||||||||||||||||| | Sbjct: 28290848 cgccgccggctgcctccacgtcctcctccgcgccgagcgctccctcggcgaccgcgacat 28290907 Query: 382 cggcgaggtccacatcccgctctccgagctgctctccggc 421 |||||||||| |||||||||| |||| | ||||||||| Sbjct: 28290908 cggcgaggtcatcatcccgctcgccgacgtcctctccggc 28290947 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 268 cggcggccgcaacccgacctggaacgccacggtccggttcgccgt 312 |||||||||| ||||| |||||||||||||| |||| ||| |||| Sbjct: 28290785 cggcggccgccacccggcctggaacgccacgctccgcttcaccgt 28290829 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 256 caccgaccgctccggcggccgc 277 |||||||||||||||||||||| Sbjct: 28127375 caccgaccgctccggcggccgc 28127354 Score = 40.1 bits (20), Expect = 6.4 Identities = 41/48 (85%) Strand = Plus / Plus Query: 166 ggacctcaaggacgtgaacctcttctcggccatggaggtgtacgcggt 213 |||||| ||| |||| ||| || ||||| |||||||||||||||||| Sbjct: 28290683 ggacctgaagaacgtcaacttcatctcgcgcatggaggtgtacgcggt 28290730
>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0625E02 Length = 153921 Score = 107 bits (54), Expect = 3e-20 Identities = 166/200 (83%), Gaps = 5/200 (2%) Strand = Plus / Plus Query: 195 ccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcccgccagcgcgtcg 254 |||||||||||||||| |||||||| |||| ||| |||||| | |||||||| || || Sbjct: 141748 ccatggaggtgtacgccgtcgtctccgtctccggcaacccgctcgcccgccagtgca-cg 141806 Query: 255 c-caccgaccgctccggcggccgcaacccgacctggaacgccacggtccggttcgccgtg 313 | | |||||||| |||||||||||||||||| |||||||||||| ||| ||||||| Sbjct: 141807 ctccccgaccgccacggcggccgcaacccgacgtggaacgccacgctccacctcgccgtc 141866 Query: 314 ccggccaacgccgcgggctc---cgtccacgtgctgctccgcgccaagcgcgccctcggc 370 || ||| ||| ||||| | | ||||||| || |||||| || |||||||||||||| Sbjct: 141867 cccgccgccgcgccgggcgcgttcctccacgtcctcctccgcaccgagcgcgccctcggc 141926 Query: 371 gaccgcgacgtcggcgaggt 390 |||||||||||||||||||| Sbjct: 141927 gaccgcgacgtcggcgaggt 141946 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 322 cgccgcgggctccgtccacgtgctgctccgcgccaagcgcgccctcggcgaccgcgacgt 381 |||||| |||| | ||||||| || ||||||||| ||||| ||||||||||||||||| | Sbjct: 146393 cgccgccggctgcctccacgtcctcctccgcgccgagcgctccctcggcgaccgcgacat 146452 Query: 382 cggcgaggtccacatcccgctctccgagctgctctccggc 421 |||||||||| |||||||||| |||| | ||||||||| Sbjct: 146453 cggcgaggtcatcatcccgctcgccgacgtcctctccggc 146492 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 268 cggcggccgcaacccgacctggaacgccacggtccggttcgccgt 312 |||||||||| ||||| |||||||||||||| |||| ||| |||| Sbjct: 146330 cggcggccgccacccggcctggaacgccacgctccgcttcaccgt 146374 Score = 40.1 bits (20), Expect = 6.4 Identities = 41/48 (85%) Strand = Plus / Plus Query: 166 ggacctcaaggacgtgaacctcttctcggccatggaggtgtacgcggt 213 |||||| ||| |||| ||| || ||||| |||||||||||||||||| Sbjct: 146228 ggacctgaagaacgtcaacttcatctcgcgcatggaggtgtacgcggt 146275
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0470D12 Length = 157248 Score = 107 bits (54), Expect = 3e-20 Identities = 166/200 (83%), Gaps = 5/200 (2%) Strand = Plus / Plus Query: 195 ccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcccgccagcgcgtcg 254 |||||||||||||||| |||||||| |||| ||| |||||| | |||||||| || || Sbjct: 11766 ccatggaggtgtacgccgtcgtctccgtctccggcaacccgctcgcccgccagtgca-cg 11824 Query: 255 c-caccgaccgctccggcggccgcaacccgacctggaacgccacggtccggttcgccgtg 313 | | |||||||| |||||||||||||||||| |||||||||||| ||| ||||||| Sbjct: 11825 ctccccgaccgccacggcggccgcaacccgacgtggaacgccacgctccacctcgccgtc 11884 Query: 314 ccggccaacgccgcgggctc---cgtccacgtgctgctccgcgccaagcgcgccctcggc 370 || ||| ||| ||||| | | ||||||| || |||||| || |||||||||||||| Sbjct: 11885 cccgccgccgcgccgggcgcgttcctccacgtcctcctccgcaccgagcgcgccctcggc 11944 Query: 371 gaccgcgacgtcggcgaggt 390 |||||||||||||||||||| Sbjct: 11945 gaccgcgacgtcggcgaggt 11964 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 322 cgccgcgggctccgtccacgtgctgctccgcgccaagcgcgccctcggcgaccgcgacgt 381 |||||| |||| | ||||||| || ||||||||| ||||| ||||||||||||||||| | Sbjct: 16411 cgccgccggctgcctccacgtcctcctccgcgccgagcgctccctcggcgaccgcgacat 16470 Query: 382 cggcgaggtccacatcccgctctccgagctgctctccggc 421 |||||||||| |||||||||| |||| | ||||||||| Sbjct: 16471 cggcgaggtcatcatcccgctcgccgacgtcctctccggc 16510 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 268 cggcggccgcaacccgacctggaacgccacggtccggttcgccgt 312 |||||||||| ||||| |||||||||||||| |||| ||| |||| Sbjct: 16348 cggcggccgccacccggcctggaacgccacgctccgcttcaccgt 16392 Score = 40.1 bits (20), Expect = 6.4 Identities = 41/48 (85%) Strand = Plus / Plus Query: 166 ggacctcaaggacgtgaacctcttctcggccatggaggtgtacgcggt 213 |||||| ||| |||| ||| || ||||| |||||||||||||||||| Sbjct: 16246 ggacctgaagaacgtcaacttcatctcgcgcatggaggtgtacgcggt 16293
>gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1118_F06, complete sequence Length = 136143 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 197 atggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcccgccagcgcgtcgcc 256 |||||||| |||||||| |||| ||| | |||||||||||| | ||||||||||||||| Sbjct: 36344 atggaggtctacgcggtggtctacctcgccggcgacccgcgcgcgcgccagcgcgtcgcc 36285 Query: 257 accgaccgctccggcggccgcaacccg 283 || |||||| ||||||||||||||||| Sbjct: 36284 acggaccgcgccggcggccgcaacccg 36258 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 cggcgaccgcgacgtcggcgaggt 390 |||||||||||||||||| ||||| Sbjct: 36153 cggcgaccgcgacgtcggggaggt 36130
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 197 atggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcccgccagcgcgtcgcc 256 |||||||| |||||||| |||| ||| | |||||||||||| | ||||||||||||||| Sbjct: 17659586 atggaggtctacgcggtggtctacctcgccggcgacccgcgcgcgcgccagcgcgtcgcc 17659527 Query: 257 accgaccgctccggcggccgcaacccg 283 || |||||| ||||||||||||||||| Sbjct: 17659526 acggaccgcgccggcggccgcaacccg 17659500 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 338 cacgtgctgctccgcgccaagcgcgccctcggcgaccgcgacgtcggcgaggt 390 |||||||||||||||||| |||||| | |||||||| |||||||||| ||||| Sbjct: 2746540 cacgtgctgctccgcgccgagcgcgtcttcggcgacagcgacgtcggggaggt 2746488 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ctccggcggccgcaacccga 284 |||||||||||||||||||| Sbjct: 20810219 ctccggcggccgcaacccga 20810200 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 cggcgaccgcgacgtcggcgaggt 390 |||||||||||||||||| ||||| Sbjct: 17659395 cggcgaccgcgacgtcggggaggt 17659372
>ref|XM_479453.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1249 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 322 cgccgcgggctccgtccacgtgctgctccgcgccaagcgcgccctcggcgaccgcgacgt 381 |||||| |||| | ||||||| || ||||||||| ||||| ||||||||||||||||| | Sbjct: 287 cgccgccggctgcctccacgtcctcctccgcgccgagcgctccctcggcgaccgcgacat 346 Query: 382 cggcgaggtccacatcccgctctccgagctgctctccggc 421 |||||||||| |||||||||| |||| | ||||||||| Sbjct: 347 cggcgaggtcatcatcccgctcgccgacgtcctctccggc 386 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 268 cggcggccgcaacccgacctggaacgccacggtccggttcgccgt 312 |||||||||| ||||| |||||||||||||| |||| ||| |||| Sbjct: 224 cggcggccgccacccggcctggaacgccacgctccgcttcaccgt 268 Score = 40.1 bits (20), Expect = 6.4 Identities = 41/48 (85%) Strand = Plus / Plus Query: 166 ggacctcaaggacgtgaacctcttctcggccatggaggtgtacgcggt 213 |||||| ||| |||| ||| || ||||| |||||||||||||||||| Sbjct: 122 ggacctgaagaacgtcaacttcatctcgcgcatggaggtgtacgcggt 169
>ref|XM_506555.1| PREDICTED Oryza sativa (japonica cultivar-group), P0470D12.106 mRNA Length = 1259 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 322 cgccgcgggctccgtccacgtgctgctccgcgccaagcgcgccctcggcgaccgcgacgt 381 |||||| |||| | ||||||| || ||||||||| ||||| ||||||||||||||||| | Sbjct: 294 cgccgccggctgcctccacgtcctcctccgcgccgagcgctccctcggcgaccgcgacat 353 Query: 382 cggcgaggtccacatcccgctctccgagctgctctccggc 421 |||||||||| |||||||||| |||| | ||||||||| Sbjct: 354 cggcgaggtcatcatcccgctcgccgacgtcctctccggc 393 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 268 cggcggccgcaacccgacctggaacgccacggtccggttcgccgt 312 |||||||||| ||||| |||||||||||||| |||| ||| |||| Sbjct: 231 cggcggccgccacccggcctggaacgccacgctccgcttcaccgt 275 Score = 40.1 bits (20), Expect = 6.4 Identities = 41/48 (85%) Strand = Plus / Plus Query: 166 ggacctcaaggacgtgaacctcttctcggccatggaggtgtacgcggt 213 |||||| ||| |||| ||| || ||||| |||||||||||||||||| Sbjct: 129 ggacctgaagaacgtcaacttcatctcgcgcatggaggtgtacgcggt 176
>dbj|AK099020.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119K22, full insert sequence Length = 1249 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 322 cgccgcgggctccgtccacgtgctgctccgcgccaagcgcgccctcggcgaccgcgacgt 381 |||||| |||| | ||||||| || ||||||||| ||||| ||||||||||||||||| | Sbjct: 287 cgccgccggctgcctccacgtcctcctccgcgccgagcgctccctcggcgaccgcgacat 346 Query: 382 cggcgaggtccacatcccgctctccgagctgctctccggc 421 |||||||||| |||||||||| |||| | ||||||||| Sbjct: 347 cggcgaggtcatcatcccgctcgccgacgtcctctccggc 386 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 268 cggcggccgcaacccgacctggaacgccacggtccggttcgccgt 312 |||||||||| ||||| |||||||||||||| |||| ||| |||| Sbjct: 224 cggcggccgccacccggcctggaacgccacgctccgcttcaccgt 268 Score = 40.1 bits (20), Expect = 6.4 Identities = 41/48 (85%) Strand = Plus / Plus Query: 166 ggacctcaaggacgtgaacctcttctcggccatggaggtgtacgcggt 213 |||||| ||| |||| ||| || ||||| |||||||||||||||||| Sbjct: 122 ggacctgaagaacgtcaacttcatctcgcgcatggaggtgtacgcggt 169
>dbj|AK061154.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-F08, full insert sequence Length = 1259 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 322 cgccgcgggctccgtccacgtgctgctccgcgccaagcgcgccctcggcgaccgcgacgt 381 |||||| |||| | ||||||| || ||||||||| ||||| ||||||||||||||||| | Sbjct: 294 cgccgccggctgcctccacgtcctcctccgcgccgagcgctccctcggcgaccgcgacat 353 Query: 382 cggcgaggtccacatcccgctctccgagctgctctccggc 421 |||||||||| |||||||||| |||| | ||||||||| Sbjct: 354 cggcgaggtcatcatcccgctcgccgacgtcctctccggc 393 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 268 cggcggccgcaacccgacctggaacgccacggtccggttcgccgt 312 |||||||||| ||||| |||||||||||||| |||| ||| |||| Sbjct: 231 cggcggccgccacccggcctggaacgccacgctccgcttcaccgt 275 Score = 40.1 bits (20), Expect = 6.4 Identities = 41/48 (85%) Strand = Plus / Plus Query: 166 ggacctcaaggacgtgaacctcttctcggccatggaggtgtacgcggt 213 |||||| ||| |||| ||| || ||||| |||||||||||||||||| Sbjct: 129 ggacctgaagaacgtcaacttcatctcgcgcatggaggtgtacgcggt 176
>gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1504_G04, complete sequence Length = 88812 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 338 cacgtgctgctccgcgccaagcgcgccctcggcgaccgcgacgtcggcgaggt 390 |||||||||||||||||| |||||| | |||||||| |||||||||| ||||| Sbjct: 24866 cacgtgctgctccgcgccgagcgcgtcttcggcgacagcgacgtcggggaggt 24814
>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence Length = 140234 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 338 cacgtgctgctccgcgccaagcgcgccctcggcgaccgcgacgtcggcgaggt 390 |||||||||||||||||| |||||| | |||||||| |||||||||| ||||| Sbjct: 119938 cacgtgctgctccgcgccgagcgcgtcttcggcgacagcgacgtcggggaggt 119990
>dbj|AK107944.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-B04, full insert sequence Length = 1069 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 338 cacgtgctgctccgcgccaagcgcgccctcggcgaccgcgacgtcggcgaggt 390 |||||||||||||||||| |||||| | |||||||| |||||||||| ||||| Sbjct: 302 cacgtgctgctccgcgccgagcgcgtcttcggcgacagcgacgtcggggaggt 354
>ref|NM_186090.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1572 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 256 caccgaccgctccggcggccgc 277 |||||||||||||||||||||| Sbjct: 546 caccgaccgctccggcggccgc 567
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcgag 388 |||||||||||||||||||||| Sbjct: 693388 cggcgaccgcgacgtcggcgag 693409 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 4368981 cggcgaccgcgacgtcggcg 4369000
>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0450A04 Length = 162545 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 256 caccgaccgctccggcggccgc 277 |||||||||||||||||||||| Sbjct: 110671 caccgaccgctccggcggccgc 110650
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 353 gccaagcgcgccctcggcgaccgcg 377 |||| |||||||||||||||||||| Sbjct: 1535259 gccacgcgcgccctcggcgaccgcg 1535283
>gb|AY837845.1| Bifidobacterium breve UCC 2003 GltRS (gltRS) gene, partial cds; ClpB (clpB) gene, complete cds; and permease gene, partial cds Length = 5579 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 gatcatcgccatggcgcagagggcg 139 |||||||||||||||||||| |||| Sbjct: 5281 gatcatcgccatggcgcagaaggcg 5257
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 acgtgctgctccgcgccaagc 359 ||||||||||||||||||||| Sbjct: 9141279 acgtgctgctccgcgccaagc 9141259
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 352 cgccaagcgcgccctcggcgaccgcgacg 380 ||||| ||||||||||||||||| ||||| Sbjct: 271542 cgccatgcgcgccctcggcgaccccgacg 271570
>gb|AC134238.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0016G06, complete sequence Length = 119910 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 acgtgctgctccgcgccaagc 359 ||||||||||||||||||||| Sbjct: 84459 acgtgctgctccgcgccaagc 84439
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 acgtgctgctccgcgccaagc 359 ||||||||||||||||||||| Sbjct: 9139112 acgtgctgctccgcgccaagc 9139092
>dbj|AK072397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078P12, full insert sequence Length = 2210 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 339 acgtgctgctccgcgccaagc 359 ||||||||||||||||||||| Sbjct: 912 acgtgctgctccgcgccaagc 932
>dbj|AK060579.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-F09, full insert sequence Length = 2006 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 339 acgtgctgctccgcgccaagc 359 ||||||||||||||||||||| Sbjct: 832 acgtgctgctccgcgccaagc 852
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 365 ctcggcgaccgcgacgtcggcgagg 389 ||||||| ||||||||||||||||| Sbjct: 1052797 ctcggcggccgcgacgtcggcgagg 1052821
>ref|XM_475254.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2151 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 ctccggcggccgcaacccga 284 |||||||||||||||||||| Sbjct: 1329 ctccggcggccgcaacccga 1348
>ref|XM_520265.1| PREDICTED: Pan troglodytes similar to RALGPS1 protein (LOC464742), mRNA Length = 860 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cccaaattcccaatccacag 47 |||||||||||||||||||| Sbjct: 809 cccaaattcccaatccacag 828
>gb|AC167665.2| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940135D9, complete sequence Length = 93659 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 cggccgcaacccgacctgga 290 |||||||||||||||||||| Sbjct: 17566 cggccgcaacccgacctgga 17585
>ref|XM_473579.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1521 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 1014 cggcgaccgcgacgtcggcg 1033
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19, complete sequence Length = 176917 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ctccggcggccgcaacccga 284 |||||||||||||||||||| Sbjct: 123443 ctccggcggccgcaacccga 123424
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 ccgtgccggccaacgccgcg 328 |||||||||||||||||||| Sbjct: 2193979 ccgtgccggccaacgccgcg 2193960
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 gccgtgccggccaacgccgc 327 |||||||||||||||||||| Sbjct: 2631197 gccgtgccggccaacgccgc 2631178
>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09, complete sequence Length = 177374 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ctccggcggccgcaacccga 284 |||||||||||||||||||| Sbjct: 66024 ctccggcggccgcaacccga 66005
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 caagcgcgccctcggcgacc 374 |||||||||||||||||||| Sbjct: 1298514 caagcgcgccctcggcgacc 1298495 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 caggatcatcgccatggcgc 131 |||||||||||||||||||| Sbjct: 857293 caggatcatcgccatggcgc 857274
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ccgccagcgcgtcgccaccg 260 |||||||||||||||||||| Sbjct: 4623267 ccgccagcgcgtcgccaccg 4623286 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 accgctccggcggccgcaac 280 |||||||||||||||||||| Sbjct: 2190500 accgctccggcggccgcaac 2190481
>gb|AY354515.1| Streptomyces sp. HK803 PlmR5 (plmR5), PlmR4 (plmR4), PlmR3 (plmR3), PlmR2 (plmR2), Plm8 (plm8), Plm4 (plm4), Plm5 (plm5), Plm6 (plm6), Plm7 (plm7), PlmT8 (plmT8), PlmT7 (plmT7), PlmT6 (plmT6), PlmT5 (plmT5), PlmT4 (plmT4), PlmT3 (plmT3), PlmT2 (plmT2), PlmT1 (plmT1), Plm1 (plm1), Plm2-3 (plm2-3), PlmJK (plmJK), PlmL (plmL), ChcA (chcA), PlmM (plmM), PlmR1 (plmR1), PlmI (plmI), PlmS2 (plmS2), PlmS3 (plmS3), and PlmS4 (plmS4) genes, complete cds Length = 76196 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 cgccacggtccggttcgccg 311 |||||||||||||||||||| Sbjct: 17450 cgccacggtccggttcgccg 17469
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 gctctccggcgcgcccgacg 431 |||||||||||||||||||| Sbjct: 322889 gctctccggcgcgcccgacg 322870
>emb|AL356862.10| Human DNA sequence from clone RP11-1M19 on chromosome 9q34.11-34.3 Contains part of the RALGPS1A gene for Ral guanine nucleotide exchange factor RalGPS1A (RALGEF2, KIAA0351) and the ANGPTL2 gene for angiopoietin-like 2 (angiopoietin-related protein 2)(ARP2, HARP), complete sequence Length = 145481 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cccaaattcccaatccacag 47 |||||||||||||||||||| Sbjct: 74069 cccaaattcccaatccacag 74088
>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16 Length = 349640 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 gctgctccgcgccaagcgcg 362 |||||||||||||||||||| Sbjct: 13999 gctgctccgcgccaagcgcg 13980
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 gccgtgccggccaacgccgc 327 |||||||||||||||||||| Sbjct: 811233 gccgtgccggccaacgccgc 811214
>gb|AY742785.1| Nitrosospira sp. NRS527 3-phosphoglycerate kinase (cbbK) gene, complete cds Length = 1311 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 cggcaccaggatcatcgccatggc 129 ||||||||||| |||||||||||| Sbjct: 1110 cggcaccaggaccatcgccatggc 1133
>gb|AY742784.1| Nitrosospira sp. GS832 3-phosphoglycerate kinase (cbbK) gene, complete cds Length = 1306 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 cggcaccaggatcatcgccatggc 129 ||||||||||| |||||||||||| Sbjct: 1105 cggcaccaggaccatcgccatggc 1128
>gb|AF531102.1| Homo sapiens interleukin 1 receptor, type I (IL1R1) gene, complete cds Length = 27864 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cccaaattcccaatccacag 47 |||||||||||||||||||| Sbjct: 18895 cccaaattcccaatccacag 18914
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 gatcggcaccaggatcatcg 122 |||||||||||||||||||| Sbjct: 4543763 gatcggcaccaggatcatcg 4543782 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 gcgaccgcgacgtcggcgag 388 |||||||||||||||||||| Sbjct: 1176344 gcgaccgcgacgtcggcgag 1176325
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ccgccagcgcgtcgccaccg 260 |||||||||||||||||||| Sbjct: 503691 ccgccagcgcgtcgccaccg 503672
>gb|AE012040.1| Xanthomonas axonopodis pv. citri str. 306, section 418 of 469 of the complete genome Length = 10691 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ccgccagcgcgtcgccaccg 260 |||||||||||||||||||| Sbjct: 8588 ccgccagcgcgtcgccaccg 8607
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 gcgaccgcgacgtcggcgag 388 |||||||||||||||||||| Sbjct: 448051 gcgaccgcgacgtcggcgag 448070
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 28866990 cggcgaccgcgacgtcggcg 28867009
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 catcccaaattcccaatcca 44 |||||||||||||||||||| Sbjct: 16070580 catcccaaattcccaatcca 16070561
>gb|AC087549.2|AC087549 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0039C14, complete sequence Length = 135098 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 catcccaaattcccaatcca 44 |||||||||||||||||||| Sbjct: 85685 catcccaaattcccaatcca 85666
>gb|AE004673.1| Pseudomonas aeruginosa PAO1, section 234 of 529 of the complete genome Length = 24397 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 tcgccaccgaccgctccggcggcc 275 ||||||||||||||| |||||||| Sbjct: 8551 tcgccaccgaccgcttcggcggcc 8574
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 gctgctccgcgccaagcgcg 362 |||||||||||||||||||| Sbjct: 1395626 gctgctccgcgccaagcgcg 1395645 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 247 gcgcgtcgccaccgaccgctccggcggc 274 |||||||||||||||| | ||||||||| Sbjct: 1029223 gcgcgtcgccaccgacgggtccggcggc 1029196
>gb|AC007271.4| Homo sapiens BAC clone RP11-4B12 from 2, complete sequence Length = 179954 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cccaaattcccaatccacag 47 |||||||||||||||||||| Sbjct: 124054 cccaaattcccaatccacag 124073
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 359 cgcgccctcggcgaccgcgacgtcggcg 386 ||||||| |||||||||||||| ||||| Sbjct: 5208661 cgcgcccgcggcgaccgcgacgacggcg 5208634
>dbj|AK120901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030M24, full insert sequence Length = 1712 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 1038 cggcgaccgcgacgtcggcg 1057
>dbj|AK119612.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-G01, full insert sequence Length = 1714 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 1037 cggcgaccgcgacgtcggcg 1056
>emb|AJ340794.1|HSA340794 Homo sapiens genomic sequence surrounding NotI site, clone NR5-DH8RS Length = 775 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 ggcgcagagggcgctggagc 146 |||||||||||||||||||| Sbjct: 504 ggcgcagagggcgctggagc 485
>dbj|AK103182.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121J02, full insert sequence Length = 1780 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 1039 cggcgaccgcgacgtcggcg 1058
>dbj|AK101618.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052H03, full insert sequence Length = 1904 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 1137 cggcgaccgcgacgtcggcg 1156
>dbj|AK061650.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C03, full insert sequence Length = 1881 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 1038 cggcgaccgcgacgtcggcg 1057
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ccgccagcgcgtcgccaccg 260 |||||||||||||||||||| Sbjct: 515834 ccgccagcgcgtcgccaccg 515815
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 catcccaaattcccaatcca 44 |||||||||||||||||||| Sbjct: 16078821 catcccaaattcccaatcca 16078802
>emb|AJ629123.1| Streptomyces sp. DSM 40477 genomic region of the apramycin biosynthesis cluster Length = 41623 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 cgccctcggcgaccgcgacg 380 |||||||||||||||||||| Sbjct: 368 cgccctcggcgaccgcgacg 387
>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence Length = 154865 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 79152 cggcgaccgcgacgtcggcg 79171 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,402,152 Number of Sequences: 3902068 Number of extensions: 2402152 Number of successful extensions: 52084 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49276 Number of HSP's gapped (non-prelim): 2795 length of query: 471 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 449 effective length of database: 17,147,199,772 effective search space: 7699092697628 effective search space used: 7699092697628 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
