>AMAB2_BACST (Q53389) N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)|
           (L-carbamoylase)
          Length = 409

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
 Frame = +3

Query: 261 RLNQLGKIS-DGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHGRFEPSNS 437
           RL +LG++     G + R   +    RA D++  +M++AGL  + D  GN+ GR E +N 
Sbjct: 10  RLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAGLFVYEDAAGNLIGRKEGTNP 69

Query: 438 TEKALLIGSHMDTVIDAG 491
               +L+GSH+D+V + G
Sbjct: 70  DATVVLVGSHLDSVYNGG 87

>AMAB1_BACST (P37113) N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)|
           (L-carbamoylase)
          Length = 409

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
 Frame = +3

Query: 261 RLNQLGKIS-DGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHGRFEPSNS 437
           RL +LG++     G + R   +    RA D++  +M++AGL  + D  GN+ GR E +N 
Sbjct: 10  RLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAGLFVYEDAAGNLIGRKEGTNP 69

Query: 438 TEKALLIGSHMDTVIDAG 491
               +L+GSH+D+V + G
Sbjct: 70  DATVVLVGSHLDSVYNGG 87

>HYUC_PSESN (Q01264) Hydantoin utilization protein C (ORF4)|
          Length = 414

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 28/77 (36%), Positives = 45/77 (58%)
 Frame = +3

Query: 261 RLNQLGKISDGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHGRFEPSNST 440
           +L ++GK  D    ++R  LS     AT ++  WM++AGLT   D  GN+ GR E    +
Sbjct: 17  QLGEIGKTKDKG--VQRLALSKEDREATLLVSEWMREAGLTVTHDHFGNLIGRKEGETPS 74

Query: 441 EKALLIGSHMDTVIDAG 491
             +++IGSH+D+V + G
Sbjct: 75  LPSVMIGSHIDSVRNGG 91

>ALLC_ECOLI (P77425) Allantoate amidohydrolase (EC 3.5.3.-)|
          Length = 411

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 26/82 (31%), Positives = 43/82 (52%)
 Frame = +3

Query: 246 DETVLRLNQLGKISDGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHGRFE 425
           +ET+  L+  G  +D  G + R   SP            M  +GL T  D++GN++GR  
Sbjct: 10  EETLPWLSSFG--ADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLN 67

Query: 426 PSNSTEKALLIGSHMDTVIDAG 491
            +   ++ +L GSH+DTV++ G
Sbjct: 68  GTEYPQEVVLSGSHIDTVVNGG 89

>ALLC_BACSU (O32149) Allantoate amidohydrolase (EC 3.5.3.-)|
          Length = 412

 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 18/43 (41%), Positives = 27/43 (62%)
 Frame = +3

Query: 363 MKDAGLTTWVDQMGNIHGRFEPSNSTEKALLIGSHMDTVIDAG 491
           M   GL T  D +GN+ GR   + S ++ ++ GSH+DTVI+ G
Sbjct: 50  MSSFGLETRFDDVGNVFGRLSGTQSPDEVIVTGSHIDTVINGG 92

>Y588_HAEIN (Q57051) Protein HI0588|
          Length = 411

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 23/76 (30%), Positives = 37/76 (48%)
 Frame = +3

Query: 264 LNQLGKISDGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHGRFEPSNSTE 443
           + +L  IS     L R   +    +A ++II   K+  L+   D +GN+  R        
Sbjct: 12  IEKLAFISSVPNELTRLAFTEEDEKAHNMIIELCKEYDLSIRRDSIGNLFIRKAGKEDFL 71

Query: 444 KALLIGSHMDTVIDAG 491
            A+  GSH+DTV++AG
Sbjct: 72  PAVAFGSHIDTVVNAG 87

>SALL2_HUMAN (Q9Y467) Sal-like protein 2 (Zinc finger protein SALL2) (HSal2)|
          Length = 1007

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +3

Query: 6   PVGGKGRGACRQATPAPNPTHRGHTRRLIMAPSSTSRPSVAVLILLLSGVPASLLATA 179
           P    G G   + TPAP+P   G T +LI +P      +  +L     G    L ATA
Sbjct: 286 PFSAGGVGRSHKPTPAPSPALPGSTDQLIASPHLAFPSTTGLLAAQCLGAARGLEATA 343

>SGCX_SALTI (P58536) Putative sgc region protein sgcX|
          Length = 372

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 22/77 (28%), Positives = 32/77 (41%)
 Frame = +3

Query: 249 ETVLRLNQLGKISDGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHGRFEP 428
           ET+  L +L  IS  E  +          +A DV            W D++GN+  R+  
Sbjct: 7   ETLFSLLRLNGISGHESSIANVMQHAFEQQAKDV------------WRDRLGNVVARYGS 54

Query: 429 SNSTEKALLIGSHMDTV 479
             S    L+I +HMD V
Sbjct: 55  DKSDALRLMIFAHMDEV 71

>YDDA_ECOLI (P31826) Inner membrane ABC transporter ATP-binding protein yddA|
           (CDS102)
          Length = 561

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = -3

Query: 323 TQERPFEEPFAIRYLAELVE-----PEDRLVPENLPVQAIPSSWLLLR 195
           T++RP  +P   ++  ++ +     P+++++ ENL     P  WLLL+
Sbjct: 352 TEQRPTNKPKNCQHAVQVADASIRTPDNKIILENLNFHVSPGKWLLLK 399

>CINA_DEIRA (O32508) CinA-like protein|
          Length = 404

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -3

Query: 362 PADNDISGSE-GSRTQERPFEEPFAIRYLAELVEPEDRLVPENLPVQA--IPSSWLLLRP 192
           P D+D++     +  QE P E+P  + +L  L E   R++PE    QA  IPS+  L  P
Sbjct: 72  PTDDDLTREAIAAVMQETPAEDPELLAWLRGLYEARGRVMPEVNRKQAWLIPSAEALPNP 131

Query: 191 V 189
           V
Sbjct: 132 V 132

>SHG1_SCHPO (Q10321) Set1 complex component shg1 (Set1C component shg1)|
           (COMPASS component shg1) (Complex proteins associated
           with set1 protein shg1)
          Length = 128

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = +3

Query: 225 LYREILRDETVLRLNQLGKISDGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMG 404
           L ++IL  E+   L++L KI D E   +RT  S   FRA  +I G +  + L  + D M 
Sbjct: 25  LRKQILETESGPLLDRLKKIIDEEMVKDRTLKSKDQFRAAPLIAGAVDRSSL--YEDSME 82

Query: 405 NI 410
           +I
Sbjct: 83  HI 84

>PEPD_ECOLI (P15288) Aminoacyl-histidine dipeptidase (EC 3.4.13.3) (Xaa-His|
           dipeptidase) (X-His dipeptidase) (Beta-alanyl-histidine
           dipeptidase) (Carnosinase) (Peptidase D)
          Length = 484

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 345 DVIIGWMKDAGLTTWVDQMGNIHGRFEPSNSTE--KALLIGSHMDTV 479
           + I+GW K+ G     DQ+GNI  R   +   E  K +++ +H+D V
Sbjct: 33  EYIVGWAKEKGFHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMV 79

>SALL2_MOUSE (Q9QX96) Sal-like protein 2 (Spalt-like protein 2) (MSal-2)|
          Length = 1004

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = +3

Query: 9   VGGKGRGACRQATPAPNPTHRGHTRRLIMAPSSTSRPSVAVLILLLSGVPASLLATA 179
           VGG GR    + TPAP+P   G T +LI +P      +  +L     G    L A A
Sbjct: 288 VGGVGRS--HKPTPAPSPALPGSTDQLIASPHLAFPGTTGLLAAQCLGAARGLEAAA 342

>RBCC1_MOUSE (Q9ESK9) RB1-inducible coiled-coil protein 1 (Coiled-coil-forming|
            protein 1) (LaXp180 protein)
          Length = 1588

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 181  GAVARRLAGTPERRRMRTATEGR--EVEEGAMMS 86
            GA A  L G PER  M TA EGR     E +MMS
Sbjct: 1407 GACAPELPGEPERSVMETADEGRLDSAMETSMMS 1440

>SGCX_SALTY (P58535) Putative sgc region protein sgcX|
          Length = 372

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 21/77 (27%), Positives = 31/77 (40%)
 Frame = +3

Query: 249 ETVLRLNQLGKISDGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHGRFEP 428
           ET+  L +L  IS  E  +          +A DV            W D++GN+  R+  
Sbjct: 7   ETLFSLLRLNGISGHENSIANVMQHAFEQQAKDV------------WRDRLGNVVARYGS 54

Query: 429 SNSTEKALLIGSHMDTV 479
                  L+I +HMD V
Sbjct: 55  DKPDALRLMIFAHMDEV 71

>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor|
          Length = 3063

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
 Frame = +3

Query: 246  DETVLRLNQLG--KISDGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHG- 416
            D TVL + ++G  K+  G G     F SP + + +D  +   +     TW    G + G 
Sbjct: 1062 DITVLPIYKMGEGKLRQGSGTTASRFKSPRNLKTSDPTMSSFR----VTWEPAPGEVKGY 1117

Query: 417  --RFEPSNSTEK--ALLIGSHMDTVI 482
               F P+    +   L++G + +TV+
Sbjct: 1118 KVTFHPTGDDRRLGELVVGPYDNTVV 1143

>SGCX_ECOLI (P39366) Putative sgc region protein sgcX|
          Length = 373

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 303 LERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHGRFEPSNSTEKALLIGSHMDTV 479
           L+   +S       DV++   +      W D++GN+  R+         L+I +HMD V
Sbjct: 13  LQHNAISGHENAVADVMLCEFRRQAKEVWRDRLGNVVARYGSDKPDALRLMIFAHMDEV 71

>CYPR4_CYNCA (P40781) Protein CYPRO4|
          Length = 501

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 9   VGGKGRGACRQATPAPNPTHRGHTRRLIMAPSSTSRP 119
           VGG   G     TP      RG T  L+M+P+   +P
Sbjct: 154 VGGSSSGGYSNLTPQKALLMRGETNMLLMSPAKAGKP 190


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,191,268
Number of Sequences: 219361
Number of extensions: 1225609
Number of successful extensions: 3536
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3535
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)