>HAP28_RAT (Q62785) 28 kDa heat- and acid-stable phosphoprotein|
           (PDGF-associated protein) (PAP) (PDGFA-associated
           protein 1) (PAP1)
          Length = 181

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 37/121 (30%), Positives = 45/121 (37%), Gaps = 21/121 (17%)
 Frame = +1

Query: 7   MGRGKFKGKPTGR-RNFSTPEEI--------------------ASGTSGRPRSFKKNXXX 123
           M +G  KG   GR R +++PEEI                      G SG P+  KK+   
Sbjct: 1   MPKGGRKGGHKGRVRQYTSPEEIDAQLQAEKQKANEEDEQEEGGDGASGDPKKEKKSLDS 60

Query: 124 XXXXXXXXXXXXXXXXXXXXXXKKHKGTEGGIQIENPNLVKAKNIKAKEADLGKTTELSR 303
                                 +K KG EG I IENPN V     K  + DL    ELSR
Sbjct: 61  DESEDEDDDYQ-----------QKRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSR 109

Query: 304 R 306
           R
Sbjct: 110 R 110

>HAP28_MOUSE (Q3UHX2) 28 kDa heat- and acid-stable phosphoprotein|
           (PDGF-associated protein) (PAP) (PDGFA-associated
           protein 1) (PAP1)
          Length = 181

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 37/121 (30%), Positives = 45/121 (37%), Gaps = 21/121 (17%)
 Frame = +1

Query: 7   MGRGKFKGKPTGR-RNFSTPEEI--------------------ASGTSGRPRSFKKNXXX 123
           M +G  KG   GR R +++PEEI                      G SG P+  KK+   
Sbjct: 1   MPKGGRKGGHKGRVRQYTSPEEIDAQLQAEKQKANEEDEQEEGGDGASGDPKKEKKSLDS 60

Query: 124 XXXXXXXXXXXXXXXXXXXXXXKKHKGTEGGIQIENPNLVKAKNIKAKEADLGKTTELSR 303
                                 +K KG EG I IENPN V     K  + DL    ELSR
Sbjct: 61  DESEDEDDDYQ-----------QKRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSR 109

Query: 304 R 306
           R
Sbjct: 110 R 110

>HAP28_HUMAN (Q13442) 28 kDa heat- and acid-stable phosphoprotein|
           (PDGF-associated protein) (PAP) (PDGFA-associated
           protein 1) (PAP1)
          Length = 181

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 36/121 (29%), Positives = 45/121 (37%), Gaps = 21/121 (17%)
 Frame = +1

Query: 7   MGRGKFKGKPTGR-RNFSTPEEI--------------------ASGTSGRPRSFKKNXXX 123
           M +G  KG   GR R +++PEEI                      G +G P+  KK+   
Sbjct: 1   MPKGGRKGGHKGRARQYTSPEEIDAQLQAEKQKAREEEEQKEGGDGAAGDPKKEKKSLDS 60

Query: 124 XXXXXXXXXXXXXXXXXXXXXXKKHKGTEGGIQIENPNLVKAKNIKAKEADLGKTTELSR 303
                                 +K KG EG I IENPN V     K  + DL    ELSR
Sbjct: 61  DESEDEEDDYQ-----------QKRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSR 109

Query: 304 R 306
           R
Sbjct: 110 R 110

>RPOC_BLOFL (Q7VRP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1420

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 205  TEGGIQIENPNLVKAKNIKAKEADLGKTTELSR 303
            +E  IQI+N  +V+ KN+KA     GK    SR
Sbjct: 954  SESSIQIKNQGIVRLKNVKAVINGQGKLVITSR 986


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.307    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,583,649
Number of Sequences: 219361
Number of extensions: 431155
Number of successful extensions: 1274
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)