ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart61b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191258.1| Oryza sativa (japonica cultivar-group), predic... 139 6e-30
2dbj|AK103612.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 6e-30
3gb|AY103597.1| Zea mays PCO084307 mRNA sequence 123 3e-25
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 119 5e-24
5dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic D... 119 5e-24
6gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome... 82 1e-12
7gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome... 82 1e-12
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
9dbj|AK073259.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
10gb|AY815201.1| Schistosoma japonicum SJCHGC02817 protein mRNA, c... 42 1.0
11gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, com... 40 4.0
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.0
13gb|AC114819.4| Mus musculus BAC clone RP23-52J20 from chromosome... 40 4.0
14gb|AC133100.5| Mus musculus BAC clone RP23-98O11 from chromosome... 40 4.0
15emb|BX927157.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 4.0
16emb|AL928642.5| Mouse DNA sequence from clone RP24-191C1 on chro... 40 4.0
17gb|AC013650.8| Homo sapiens chromosome 8, clone RP11-24L2, compl... 40 4.0
18gb|AC009995.9|AC009995 Homo sapiens chromosome 8, clone RP11-373... 40 4.0
19ref|XM_394714.2| PREDICTED: Apis mellifera similar to MGC69094 p... 40 4.0
20dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
21gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.0
22dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 4.0
23emb|AL935046.6| Zebrafish DNA sequence from clone CH211-171K3, c... 40 4.0
24gb|AC157784.2| Mus musculus chromosome 18, clone RP24-163C18, co... 40 4.0 
>ref|NM_191258.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 834

 Score =  139 bits (70), Expect = 6e-30
 Identities = 103/114 (90%)
 Strand = Plus / Plus

                                                                       
Query: 193 aaacataaaggaactgaaggtggtattcaaatcgaaaatccaaacctggtgaaagcaaag 252
           |||||||||||||||||||||  |||||| || ||||| || ||| | ||||||||||||
Sbjct: 463 aaacataaaggaactgaaggtcttattcagattgaaaacccgaacttagtgaaagcaaag 522

                                                                 
Query: 253 aatataaaagccaaggaagctgatcttggaaagacaactgaactctcgaggcgt 306
           ||||||||||||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 523 aatataaaagccaaggaagttgatctcggaaagacaactgagctctcgaggcgt 576



 Score =  131 bits (66), Expect = 1e-27
 Identities = 90/98 (91%)
 Strand = Plus / Plus

                                                                       
Query: 2   ccgccatgggcaggggcaagttcaagggcaagccaaccggccgccgcaacttctccaccc 61
           |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 263 ccgccatgggcagggggaagttcaagggcaagcccaccggccgccgcaacttctccaccc 322

                                                 
Query: 62  cggaggagatcgcttctggaacttctgggcgcccacgc 99
           | |||||||||||| |||| ||||| || || ||||||
Sbjct: 323 ccgaggagatcgctgctggtacttcaggtcgtccacgc 360
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>dbj|AK103612.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133K04, full
           insert sequence
          Length = 875

 Score =  139 bits (70), Expect = 6e-30
 Identities = 103/114 (90%)
 Strand = Plus / Plus

                                                                       
Query: 193 aaacataaaggaactgaaggtggtattcaaatcgaaaatccaaacctggtgaaagcaaag 252
           |||||||||||||||||||||  |||||| || ||||| || ||| | ||||||||||||
Sbjct: 319 aaacataaaggaactgaaggtcttattcagattgaaaacccgaacttagtgaaagcaaag 378

                                                                 
Query: 253 aatataaaagccaaggaagctgatcttggaaagacaactgaactctcgaggcgt 306
           ||||||||||||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 379 aatataaaagccaaggaagttgatctcggaaagacaactgagctctcgaggcgt 432



 Score =  129 bits (65), Expect = 6e-27
 Identities = 80/85 (94%)
 Strand = Plus / Plus

                                                                       
Query: 2   ccgccatgggcaggggcaagttcaagggcaagccaaccggccgccgcaacttctccaccc 61
           |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 119 ccgccatgggcagggggaagttcaagggcaagcccaccggccgccgcaacttctccaccc 178

                                    
Query: 62  cggaggagatcgcttctggaacttc 86
           | |||||||||||| |||| |||||
Sbjct: 179 ccgaggagatcgctgctggtacttc 203
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>gb|AY103597.1| Zea mays PCO084307 mRNA sequence
          Length = 923

 Score =  123 bits (62), Expect = 3e-25
 Identities = 101/114 (88%)
 Strand = Plus / Plus

                                                                       
Query: 193 aaacataaaggaactgaaggtggtattcaaatcgaaaatccaaacctggtgaaagcaaag 252
           ||||||||||| ||||| |||  |||||| || |||||||||||| |||||||||| |||
Sbjct: 383 aaacataaaggcactgagggtattattcagattgaaaatccaaacttggtgaaagccaag 442

                                                                 
Query: 253 aatataaaagccaaggaagctgatcttggaaagacaactgaactctcgaggcgt 306
           |||||||| |||||||||| |||| |||| ||||||||||||||||| ||||||
Sbjct: 443 aatataaaggccaaggaagttgattttggcaagacaactgaactctcaaggcgt 496



 Score =  101 bits (51), Expect = 1e-18
 Identities = 87/99 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccgccatgggcaggggcaagttcaagggcaagccaaccggccgccgcaacttctccacc 60
           ||||||||||| ||||| ||||||||||| ||||| || |||||||||||||||||||| 
Sbjct: 191 gccgccatggggaggggaaagttcaaggggaagcccacaggccgccgcaacttctccaca 250

                                                  
Query: 61  ccggaggagatcgcttctggaacttctgggcgcccacgc 99
           || |||||||||||| |||| ||||| || || ||||||
Sbjct: 251 cccgaggagatcgctgctggtacttcaggtcggccacgc 289
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  119 bits (60), Expect = 5e-24
 Identities = 69/72 (95%)
 Strand = Plus / Minus

                                                                            
Query: 2        ccgccatgggcaggggcaagttcaagggcaagccaaccggccgccgcaacttctccaccc 61
                |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 31582113 ccgccatgggcagggggaagttcaagggcaagcccaccggccgccgcaacttctccaccc 31582054

                            
Query: 62       cggaggagatcg 73
                | ||||||||||
Sbjct: 31582053 ccgaggagatcg 31582042



 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                            
Query: 193      aaacataaaggaactgaaggtggtattcaaatcgaaaatccaaacctggtgaaagcaaag 252
                |||||||||||||||||||||  |||||| || ||||| || ||| | ||||||||||||
Sbjct: 31580669 aaacataaaggaactgaaggtcttattcagattgaaaacccgaacttagtgaaagcaaag 31580610

                                        
Query: 253      aatataaaagccaaggaagctgat 276
                ||||||||||||||||||| ||||
Sbjct: 31580609 aatataaaagccaaggaagttgat 31580586



 Score = 46.1 bits (23), Expect = 0.065
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 280      ggaaagacaactgaactctcgaggcgt 306
                |||||||||||||| ||||||||||||
Sbjct: 31580427 ggaaagacaactgagctctcgaggcgt 31580401
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>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0435B05
          Length = 150997

 Score =  119 bits (60), Expect = 5e-24
 Identities = 69/72 (95%)
 Strand = Plus / Minus

                                                                         
Query: 2     ccgccatgggcaggggcaagttcaagggcaagccaaccggccgccgcaacttctccaccc 61
             |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 95136 ccgccatgggcagggggaagttcaagggcaagcccaccggccgccgcaacttctccaccc 95077

                         
Query: 62    cggaggagatcg 73
             | ||||||||||
Sbjct: 95076 ccgaggagatcg 95065



 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                         
Query: 193   aaacataaaggaactgaaggtggtattcaaatcgaaaatccaaacctggtgaaagcaaag 252
             |||||||||||||||||||||  |||||| || ||||| || ||| | ||||||||||||
Sbjct: 93692 aaacataaaggaactgaaggtcttattcagattgaaaacccgaacttagtgaaagcaaag 93633

                                     
Query: 253   aatataaaagccaaggaagctgat 276
             ||||||||||||||||||| ||||
Sbjct: 93632 aatataaaagccaaggaagttgat 93609



 Score = 46.1 bits (23), Expect = 0.065
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 280   ggaaagacaactgaactctcgaggcgt 306
             |||||||||||||| ||||||||||||
Sbjct: 93450 ggaaagacaactgagctctcgaggcgt 93424
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>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06,
              complete sequence
          Length = 142068

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 68/77 (88%)
 Strand = Plus / Plus

                                                                          
Query: 193    aaacataaaggaactgaaggtggtattcaaatcgaaaatccaaacctggtgaaagcaaag 252
              ||||||||||| |||||||||  |||  | || || |||||||||||||||||| |||||
Sbjct: 118216 aaacataaaggcactgaaggtcttatcgagattgagaatccaaacctggtgaaaccaaag 118275

                               
Query: 253    aatataaaagccaagga 269
              |||||||||||||||||
Sbjct: 118276 aatataaaagccaagga 118292



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 13     aggggcaagttcaagggcaagccaaccgg 41
              ||||| ||||||||||||||||| |||||
Sbjct: 116424 aggggaaagttcaagggcaagcccaccgg 116452
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>gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1130G10,
             complete sequence
          Length = 143073

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 68/77 (88%)
 Strand = Plus / Plus

                                                                         
Query: 193   aaacataaaggaactgaaggtggtattcaaatcgaaaatccaaacctggtgaaagcaaag 252
             ||||||||||| |||||||||  |||  | || || |||||||||||||||||| |||||
Sbjct: 23973 aaacataaaggcactgaaggtcttatcgagattgagaatccaaacctggtgaaaccaaag 24032

                              
Query: 253   aatataaaagccaagga 269
             |||||||||||||||||
Sbjct: 24033 aatataaaagccaagga 24049



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 13    aggggcaagttcaagggcaagccaaccgg 41
             ||||| ||||||||||||||||| |||||
Sbjct: 22181 aggggaaagttcaagggcaagcccaccgg 22209
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 68/77 (88%)
 Strand = Plus / Plus

                                                                            
Query: 193      aaacataaaggaactgaaggtggtattcaaatcgaaaatccaaacctggtgaaagcaaag 252
                ||||||||||| |||||||||  |||  | || || |||||||||||||||||| |||||
Sbjct: 25383612 aaacataaaggcactgaaggtcttatcgagattgagaatccaaacctggtgaaaccaaag 25383671

                                 
Query: 253      aatataaaagccaagga 269
                |||||||||||||||||
Sbjct: 25383672 aatataaaagccaagga 25383688



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 13       aggggcaagttcaagggcaagccaaccgg 41
                ||||| ||||||||||||||||| |||||
Sbjct: 25381820 aggggaaagttcaagggcaagcccaccgg 25381848
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>dbj|AK073259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026J20, full
           insert sequence
          Length = 1257

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 68/77 (88%)
 Strand = Plus / Plus

                                                                       
Query: 193 aaacataaaggaactgaaggtggtattcaaatcgaaaatccaaacctggtgaaagcaaag 252
           ||||||||||| |||||||||  |||  | || || |||||||||||||||||| |||||
Sbjct: 286 aaacataaaggcactgaaggtcttatcgagattgagaatccaaacctggtgaaaccaaag 345

                            
Query: 253 aatataaaagccaagga 269
           |||||||||||||||||
Sbjct: 346 aatataaaagccaagga 362



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 13  aggggcaagttcaagggcaagccaaccgg 41
           ||||| ||||||||||||||||| |||||
Sbjct: 79  aggggaaagttcaagggcaagcccaccgg 107
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>gb|AY815201.1| Schistosoma japonicum SJCHGC02817 protein mRNA, complete cds
          Length = 846

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 225 cgaaaatccaaacctggtgaa 245
           |||||||||||||||||||||
Sbjct: 260 cgaaaatccaaacctggtgaa 280
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>gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, complete sequence
          Length = 172618

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   gaaagcaaagaatataaaag 262
             ||||||||||||||||||||
Sbjct: 23262 gaaagcaaagaatataaaag 23281
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 29      gcaagccaaccggccgccgcaact 52
               |||||| |||||||||||||||||
Sbjct: 4509684 gcaagcgaaccggccgccgcaact 4509707
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>gb|AC114819.4| Mus musculus BAC clone RP23-52J20 from chromosome 8, complete sequence
          Length = 204239

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 243    gaaagcaaagaatataaaag 262
              ||||||||||||||||||||
Sbjct: 144272 gaaagcaaagaatataaaag 144291
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>gb|AC133100.5| Mus musculus BAC clone RP23-98O11 from chromosome 19, complete sequence
          Length = 204855

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    agttcaagggcaagccaacc 39
             ||||||||||||||||||||
Sbjct: 64905 agttcaagggcaagccaacc 64924
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>emb|BX927157.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5,
             complete genome; segment 10/10
          Length = 140057

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   aaagccaaggaagctgatct 278
             ||||||||||||||||||||
Sbjct: 72676 aaagccaaggaagctgatct 72657
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>emb|AL928642.5| Mouse DNA sequence from clone RP24-191C1 on chromosome 4 Contains the
             gene for a novel protein similar to aldolase 1 A isoform
             Aldo1, complete sequence
          Length = 86789

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   aaagaatataaaagccaagg 268
             ||||||||||||||||||||
Sbjct: 75693 aaagaatataaaagccaagg 75712
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>gb|AC013650.8| Homo sapiens chromosome 8, clone RP11-24L2, complete sequence
          Length = 147242

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 248    caaagaatataaaagccaag 267
              ||||||||||||||||||||
Sbjct: 138411 caaagaatataaaagccaag 138392
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>gb|AC009995.9|AC009995 Homo sapiens chromosome 8, clone RP11-373H15, complete sequence
          Length = 174037

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 248    caaagaatataaaagccaag 267
              ||||||||||||||||||||
Sbjct: 163387 caaagaatataaaagccaag 163406
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>ref|XM_394714.2| PREDICTED: Apis mellifera similar to MGC69094 protein (LOC411240),
            mRNA
          Length = 2108

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 244  aaagcaaagaatataaaagccaaggaagctga 275
            |||||||||||  |||||||||| ||||||||
Sbjct: 1534 aaagcaaagaaattaaaagccaaagaagctga 1565
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 29      gcaagccaaccggccgccgcaact 52
               |||||| |||||||||||||||||
Sbjct: 4509799 gcaagcgaaccggccgccgcaact 4509822
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>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0042J17,
              complete sequence
          Length = 171442

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 29     gcaagccaaccggccgccgcaact 52
              |||||| |||||||||||||||||
Sbjct: 114976 gcaagcgaaccggccgccgcaact 114999
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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 259     aaagccaaggaagctgatct 278
               ||||||||||||||||||||
Sbjct: 3242020 aaagccaaggaagctgatct 3242001
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>emb|AL935046.6| Zebrafish DNA sequence from clone CH211-171K3, complete sequence
          Length = 162239

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 242    tgaaagcaaagaatataaaagccaagga 269
              |||||||||||||||| || ||||||||
Sbjct: 153620 tgaaagcaaagaatatcaaggccaagga 153593
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>gb|AC157784.2| Mus musculus chromosome 18, clone RP24-163C18, complete sequence
          Length = 182283

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   aaaggaactgaaggtggtat 218
             ||||||||||||||||||||
Sbjct: 81719 aaaggaactgaaggtggtat 81738


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,023,527
Number of Sequences: 3902068
Number of extensions: 2023527
Number of successful extensions: 43797
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43700
Number of HSP's gapped (non-prelim): 93
length of query: 306
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 284
effective length of database: 17,147,199,772
effective search space: 4869804735248
effective search space used: 4869804735248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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