ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart61b09 |
|---|---|
| Clone Library Name | barley_pub |
>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1| Length = 267 Score = 84.0 bits (206), Expect = 1e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 261 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76 Query: 262 RDFDGSRMIVEFAK 303 D+DG R+ VEF + Sbjct: 77 YDYDGYRLRVEFPR 90
>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 84.0 bits (206), Expect = 1e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 261 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 262 RDFDGSRMIVEFAK 303 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 84.0 bits (206), Expect = 1e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 261 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 262 RDFDGSRMIVEFAK 303 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing| factor SF2, P33 subunit) (Alternative splicing factor ASF-1) Length = 247 Score = 84.0 bits (206), Expect = 1e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 261 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 262 RDFDGSRMIVEFAK 303 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 84.0 bits (206), Expect = 1e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 261 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 262 RDFDGSRMIVEFAK 303 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1| Length = 245 Score = 83.6 bits (205), Expect = 2e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 261 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 262 RDFDGSRMIVEFAK 303 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1| Length = 245 Score = 82.8 bits (203), Expect = 3e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 261 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDG 75 Query: 262 RDFDGSRMIVEFAK 303 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 79.7 bits (195), Expect = 3e-15 Identities = 38/77 (49%), Positives = 53/77 (68%), Gaps = 5/77 (6%) Frame = +1 Query: 88 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYN 252 G+ R+YVG LPS R +DLEDLF +YGR+R +++K+ FAFV F DPRDA++A Y Sbjct: 13 GDGRIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYG 72 Query: 253 LDGRDFDGSRMIVEFAK 303 +G D+ R+ VEF + Sbjct: 73 RNGYDYGQCRLRVEFPR 89
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 78.6 bits (192), Expect = 6e-15 Identities = 37/77 (48%), Positives = 53/77 (68%), Gaps = 5/77 (6%) Frame = +1 Query: 88 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYN 252 G+ R+YVG LP+ R +DLEDLF +YGR+R +++K+ FAFV F DPRDA++A Y Sbjct: 12 GDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYG 71 Query: 253 LDGRDFDGSRMIVEFAK 303 +G D+ R+ VEF + Sbjct: 72 RNGYDYGQCRLRVEFPR 88
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 78.6 bits (192), Expect = 6e-15 Identities = 37/77 (48%), Positives = 53/77 (68%), Gaps = 5/77 (6%) Frame = +1 Query: 88 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYN 252 G+ R+YVG LP+ R +DLEDLF +YGR+R +++K+ FAFV F DPRDA++A Y Sbjct: 12 GDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYG 71 Query: 253 LDGRDFDGSRMIVEFAK 303 +G D+ R+ VEF + Sbjct: 72 RNGYDYGQCRLRVEFPR 88
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 76.3 bits (186), Expect = 3e-14 Identities = 35/69 (50%), Positives = 49/69 (71%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 R+Y+GRL + R RD+E F YG++ VD+K+ + FVEF D RDAD+A Y L+G+D G Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62 Query: 277 SRMIVEFAK 303 R+IVE A+ Sbjct: 63 ERVIVEHAR 71
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 76.3 bits (186), Expect = 3e-14 Identities = 35/69 (50%), Positives = 49/69 (71%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 R+Y+GRL + R RD+E F YG++ VD+K+ + FVEF D RDAD+A Y L+G+D G Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62 Query: 277 SRMIVEFAK 303 R+IVE A+ Sbjct: 63 ERVIVEHAR 71
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 76.3 bits (186), Expect = 3e-14 Identities = 33/69 (47%), Positives = 47/69 (68%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 R+++GRL R +D+E F YGR+R +D+K F FVEF DPRDAD+A Y LDG++ Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64 Query: 277 SRMIVEFAK 303 R+ +E A+ Sbjct: 65 ERVTIEHAR 73
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 76.3 bits (186), Expect = 3e-14 Identities = 33/69 (47%), Positives = 47/69 (68%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 R+++GRL R +D+E F YGR+R +D+K F FVEF DPRDAD+A Y LDG++ Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64 Query: 277 SRMIVEFAK 303 R+ +E A+ Sbjct: 65 ERVTIEHAR 73
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 76.3 bits (186), Expect = 3e-14 Identities = 33/69 (47%), Positives = 47/69 (68%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 R+++GRL R +D+E F YGR+R +D+K F FVEF DPRDAD+A Y LDG++ Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64 Query: 277 SRMIVEFAK 303 R+ +E A+ Sbjct: 65 ERVTIEHAR 73
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 75.1 bits (183), Expect = 7e-14 Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 4/87 (4%) Frame = +1 Query: 55 MPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKH----EFAFVEFSD 222 MPR D+ ++YVG LP R +++ED+F +YGR+++VD+K FAFVEF D Sbjct: 1 MPRGGSEDQ-----KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFED 55 Query: 223 PRDADEARYNLDGRDFDGSRMIVEFAK 303 RDA++A DG +FDG R+ VEF + Sbjct: 56 HRDAEDAVRARDGYEFDGRRIRVEFTR 82
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 74.3 bits (181), Expect = 1e-13 Identities = 33/69 (47%), Positives = 50/69 (72%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 R+Y+GRLP+R RD+E F YG++ V MK+ F FV+F D RDAD+A ++L+G++ G Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCG 62 Query: 277 SRMIVEFAK 303 R+I+EF + Sbjct: 63 ERVILEFPR 71
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 74.3 bits (181), Expect = 1e-13 Identities = 33/69 (47%), Positives = 48/69 (69%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 R+Y+GRL R +D++ F YGR+ VD+K+ + FVEF D RDAD+A Y L+G++ G Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62 Query: 277 SRMIVEFAK 303 R+IVE A+ Sbjct: 63 ERVIVEHAR 71
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 73.2 bits (178), Expect = 3e-13 Identities = 31/69 (44%), Positives = 51/69 (73%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 R+Y+GRL SR +D+E F YG++R V +K+ F FVEF D RDA++A ++L+G++ G Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63 Query: 277 SRMIVEFAK 303 R+I++++K Sbjct: 64 ERVILDYSK 72
>RSP5_CAEEL (Q10021) Probable splicing factor, arginine/serine-rich 5| (RNA-binding protein srp-3) (CeSC35-2) Length = 208 Score = 72.4 bits (176), Expect = 4e-13 Identities = 32/71 (45%), Positives = 51/71 (71%), Gaps = 2/71 (2%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 RLY+G++P R RD+E YG++ ++ MK+ FAFV+F D RDA++A ++LDG+ +G Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEG 62 Query: 277 S--RMIVEFAK 303 S R++VE A+ Sbjct: 63 SSMRLVVEMAR 73
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 71.6 bits (174), Expect = 8e-13 Identities = 35/70 (50%), Positives = 48/70 (68%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 273 +R+YVG LP R RDLE F YGR R + +K+ + FVEF D RDAD+A Y L+G++ Sbjct: 3 SRVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELL 62 Query: 274 GSRMIVEFAK 303 G R++VE A+ Sbjct: 63 GERVVVEPAR 72
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 70.9 bits (172), Expect = 1e-12 Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 5/72 (6%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDGR 264 +YVG LP R R++EDLF +YG V +D+K +AFVEF D RDA++A + DG Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68 Query: 265 DFDGSRMIVEFA 300 DFDG R+ VE A Sbjct: 69 DFDGHRLRVELA 80
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 68.6 bits (166), Expect = 6e-12 Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Frame = +1 Query: 55 MPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDP 225 M RY RYGG T++YVG L + +LE F YG +R V + FAFVEF DP Sbjct: 1 MSRYG---RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDP 57 Query: 226 RDADEARYNLDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSGRC 405 RDA++A LDG+ GSR+ VE + P + RC Sbjct: 58 RDAEDAVRGLDGKVICGSRVRVELS-----------TGMPRRSRFDRPPARRPFDPNDRC 106 Query: 406 FNCGIDGHWA 435 + CG GH+A Sbjct: 107 YECGEKGHYA 116
>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31| Length = 264 Score = 60.8 bits (146), Expect = 1e-09 Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF--D 273 ++VG TR DLE LF +YGRV VDMK +AFV F D RDA++A LD F + Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYE 63 Query: 274 GSRMIVEFAK 303 R+ VE+AK Sbjct: 64 KRRLSVEWAK 73 Score = 38.5 bits (88), Expect = 0.007 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = +1 Query: 118 PSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEA 243 P RT+ D+E F YG+V +V ++ F+FV+F DA +A Sbjct: 102 PIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKA 143
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 59.7 bits (143), Expect = 3e-09 Identities = 42/123 (34%), Positives = 58/123 (47%), Gaps = 5/123 (4%) Frame = +1 Query: 82 YGGN--TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEAR 246 +GG+ T++YVG L + +LE F YG +R V + FAFVEF DPRDA++A Sbjct: 34 WGGDSETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAV 93 Query: 247 YNLDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSGRCFNCGIDG 426 LDG+ GSR+ VE + P + RC+ CG G Sbjct: 94 RGLDGKVICGSRVRVELS-----------TGMPRRSRFDRPPARRPFDPNDRCYECGEKG 142 Query: 427 HWA 435 H+A Sbjct: 143 HYA 145
>SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2| Length = 365 Score = 59.7 bits (143), Expect = 3e-09 Identities = 28/70 (40%), Positives = 43/70 (61%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 273 TRL+VGR+P + D+ D F YG++ + + F FVE D RDA + + G++F Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFM 63 Query: 274 GSRMIVEFAK 303 GSR++VE A+ Sbjct: 64 GSRIVVEPAR 73
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 57.8 bits (138), Expect = 1e-08 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEARYNLDG 261 + ++YVG LPS +++LE++F R+GR+R V + FAFVE+ D RDA++A LDG Sbjct: 2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDG 61 Query: 262 RDFDGSRMIVEFA 300 G R VE + Sbjct: 62 SRICGVRARVELS 74
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 56.2 bits (134), Expect = 3e-08 Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Frame = +1 Query: 55 MPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDP 225 MPRY E D ++YVG L S ++E F +YG +R+V + FAFVEF D Sbjct: 1 MPRYREWDLA---CKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDR 57 Query: 226 RDADEARYNLDGRDFDGSRMIVEFA 300 RDA++A LDG G+R+ VE + Sbjct: 58 RDAEDATRALDGTRCCGTRIRVEMS 82
>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) (X16 protein) Length = 164 Score = 56.2 bits (134), Expect = 3e-08 Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Frame = +1 Query: 73 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEA 243 RD + ++YVG L + +LE FG YG +R V + FAFVEF DPRDA +A Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADA 62 Query: 244 RYNLDGRDFDGSRMIVEFA 300 LDGR G R+ VE + Sbjct: 63 VRELDGRTLCGCRVRVELS 81
>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) Length = 164 Score = 56.2 bits (134), Expect = 3e-08 Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Frame = +1 Query: 73 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEA 243 RD + ++YVG L + +LE FG YG +R V + FAFVEF DPRDA +A Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADA 62 Query: 244 RYNLDGRDFDGSRMIVEFA 300 LDGR G R+ VE + Sbjct: 63 VRELDGRTLCGCRVRVELS 81
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 55.5 bits (132), Expect = 6e-08 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 3/117 (2%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 273 T+++VG L +TR ++ +LF +YG V D+ + FV D +A L+GR D Sbjct: 86 TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVD 145 Query: 274 GSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGIDGHWA 435 G + V+ + P PG G +C+ CG GHW+ Sbjct: 146 GQPLKVQVS----------------------TSRVRPKPGMGDPEQCYRCGRSGHWS 180 Score = 42.4 bits (98), Expect = 5e-04 Identities = 22/72 (30%), Positives = 36/72 (50%) Frame = +1 Query: 88 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 267 G +L++G L +T+ +L LF +YG V D+ + FV + +A NL+G Sbjct: 5 GTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYT 64 Query: 268 FDGSRMIVEFAK 303 + + VE AK Sbjct: 65 LNEFAIKVEAAK 76
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 53.9 bits (128), Expect = 2e-07 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Frame = +1 Query: 70 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDP 225 E DR G +L++G L + T + LE +FG+YGR+ R + FAFV F P Sbjct: 3 EADRPG---KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESP 59 Query: 226 RDADEARYNLDGRDFDGSRMIVEFA 300 DA +A +++G+ DG + VE A Sbjct: 60 ADAKDAARDMNGKSLDGKAIKVEQA 84
>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40| Length = 350 Score = 53.1 bits (126), Expect = 3e-07 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF--D 273 ++ G R DLE LF +YG+V VDMK FAFV D RDA++A LD +F Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63 Query: 274 GSRMIVEFAK 303 G R+ VE+ K Sbjct: 64 GRRLRVEWTK 73 Score = 38.5 bits (88), Expect = 0.007 Identities = 17/39 (43%), Positives = 25/39 (64%) Frame = +1 Query: 127 TRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEA 243 TRTRDLE F YG++ +V ++ FAF+++ DA A Sbjct: 109 TRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRA 147
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 52.8 bits (125), Expect = 4e-07 Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 3/118 (2%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF 270 +T+L+VG + ++L F YG V D+ ++AFV DA EA LD +F Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136 Query: 271 DGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGIDGHWA 435 G RM V+ + PG G C+ CG +GHW+ Sbjct: 137 QGKRMHVQLSTSRLRTA----------------------PGMGDQSGCYRCGKEGHWS 172 Score = 42.7 bits (99), Expect = 4e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 277 SRMIVEFAK 303 + VE +K Sbjct: 63 VNINVEASK 71
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 52.8 bits (125), Expect = 4e-07 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 3/124 (2%) Frame = +1 Query: 73 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 252 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 253 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGID 423 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLSTSRLRTA----------------------PGMGDQSGCYRCGKE 168 Query: 424 GHWA 435 GHW+ Sbjct: 169 GHWS 172 Score = 42.7 bits (99), Expect = 4e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 277 SRMIVEFAK 303 + VE +K Sbjct: 63 VNINVEASK 71
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 52.8 bits (125), Expect = 4e-07 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 3/124 (2%) Frame = +1 Query: 73 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 252 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 253 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGID 423 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLSTSRLRTA----------------------PGMGDQSGCYRCGKE 168 Query: 424 GHWA 435 GHW+ Sbjct: 169 GHWS 172 Score = 42.7 bits (99), Expect = 4e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 277 SRMIVEFAK 303 + VE +K Sbjct: 63 VNINVEASK 71
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 52.8 bits (125), Expect = 4e-07 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 3/124 (2%) Frame = +1 Query: 73 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 252 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 253 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGID 423 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLSTSRLRTA----------------------PGMGDQSGCYRCGKE 168 Query: 424 GHWA 435 GHW+ Sbjct: 169 GHWS 172 Score = 42.7 bits (99), Expect = 4e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 277 SRMIVEFAK 303 + VE +K Sbjct: 63 VNINVEASK 71
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 52.8 bits (125), Expect = 4e-07 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 3/124 (2%) Frame = +1 Query: 73 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 252 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 253 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGID 423 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLSTSRLRTA----------------------PGMGDQSGCYRCGKE 168 Query: 424 GHWA 435 GHW+ Sbjct: 169 GHWS 172 Score = 42.7 bits (99), Expect = 4e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 277 SRMIVEFAK 303 + VE +K Sbjct: 63 VNINVEASK 71
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 52.8 bits (125), Expect = 4e-07 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 3/124 (2%) Frame = +1 Query: 73 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 252 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 253 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGID 423 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLSTSRLRTA----------------------PGMGDQSGCYRCGKE 168 Query: 424 GHWA 435 GHW+ Sbjct: 169 GHWS 172 Score = 42.7 bits (99), Expect = 4e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 277 SRMIVEFAK 303 + VE +K Sbjct: 63 VNINVEASK 71
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 52.8 bits (125), Expect = 4e-07 Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 3/118 (2%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF 270 +T+L+VG + ++L F YG V D+ ++AFV DA EA LD +F Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136 Query: 271 DGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGIDGHWA 435 G RM V+ + PG G C+ CG +GHW+ Sbjct: 137 QGKRMHVQLSTSRLRTA----------------------PGMGDQSGCYRCGKEGHWS 172 Score = 42.7 bits (99), Expect = 4e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 277 SRMIVEFAK 303 + VE +K Sbjct: 63 VNINVEASK 71
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 52.4 bits (124), Expect = 5e-07 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 8/85 (9%) Frame = +1 Query: 70 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDP 225 E DR G +L++G L + T + LE +FG+YGR+ R + FAFV F P Sbjct: 3 EADRPG---KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESP 59 Query: 226 RDADEARYNLDGRDFDGSRMIVEFA 300 DA + +++G+ DG + VE A Sbjct: 60 ADAKDVARDMNGKSLDGKAIKVEQA 84
>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41| Length = 356 Score = 52.4 bits (124), Expect = 5e-07 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF--D 273 ++ G R DLE LF +YG+V VDMK FAFV D RDA++A LD ++ Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63 Query: 274 GSRMIVEFAK 303 G R+ VE+ K Sbjct: 64 GRRLRVEWTK 73 Score = 40.8 bits (94), Expect = 0.001 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 11/66 (16%) Frame = +1 Query: 79 RYGGNTRLYVGRLPSRT-----------RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDP 225 R GG+ R G PS+T RTRDLE F YG++ +V ++ FAF+++ Sbjct: 81 RSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQ 140 Query: 226 RDADEA 243 DA A Sbjct: 141 EDATRA 146
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 51.6 bits (122), Expect = 8e-07 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 8/79 (10%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFSDPRDADEAR 246 NT L+V + TR+ DL FGRYG + V + +F A+V+F D RDA++A Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68 Query: 247 YNLDGRDFDGSRMIVEFAK 303 +NLD + G ++ ++FA+ Sbjct: 69 HNLDRKWICGRQIEIQFAQ 87
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 51.6 bits (122), Expect = 8e-07 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 8/79 (10%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFSDPRDADEAR 246 NT L+V + TR+ DL FGRYG + V + +F A+V+F D RDA++A Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68 Query: 247 YNLDGRDFDGSRMIVEFAK 303 +NLD + G ++ ++FA+ Sbjct: 69 HNLDRKWICGRQIEIQFAQ 87
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 51.6 bits (122), Expect = 8e-07 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 8/85 (9%) Frame = +1 Query: 70 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDP 225 E DR G +L++G L + T + LE +FG+YGR+ R + FAFV P Sbjct: 3 EADRPG---KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESP 59 Query: 226 RDADEARYNLDGRDFDGSRMIVEFA 300 DA +A +++G+ DG + VE A Sbjct: 60 ADAKDAARDMNGKSLDGKAIKVEQA 84
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1| protein) (Nuclear polyadenylated RNA-binding protein 1) Length = 414 Score = 51.2 bits (121), Expect = 1e-06 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 3/100 (3%) Frame = +1 Query: 13 PLPRLGFPPLRSH---RMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHV 183 P P PP H R P + ++ NTRL+V P + +L ++FG +G ++ V Sbjct: 95 PQPYYPPPPPGEHMHGRPPMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEV 154 Query: 184 DMKHEFAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 303 + + FAFVEF + A +A + G+ F + V ++K Sbjct: 155 KILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 194
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 50.4 bits (119), Expect = 2e-06 Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 3/118 (2%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF 270 +T+L+VG + S ++L F YG V D+ ++AFV DA EA LD F Sbjct: 77 STKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAF 136 Query: 271 DGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSGR---CFNCGIDGHWA 435 G M V+ + PG G C+ CG +GHW+ Sbjct: 137 QGKLMSVKLSTSRLRTA----------------------PGMGERTGCYRCGQEGHWS 172 Score = 48.1 bits (113), Expect = 9e-06 Identities = 23/69 (33%), Positives = 35/69 (50%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 +++VG L T ++ LF +YG++ D+ F FV +ADEA NL +G Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62 Query: 277 SRMIVEFAK 303 M VE +K Sbjct: 63 MAMNVEMSK 71
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 50.4 bits (119), Expect = 2e-06 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 8/79 (10%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFSDPRDADEAR 246 NT L++ + TR DL FGRYG + V + +F A+V+F D RDA++A Sbjct: 9 NTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDAL 68 Query: 247 YNLDGRDFDGSRMIVEFAK 303 YNL+ + G ++ ++FA+ Sbjct: 69 YNLNRKWVCGRQIEIQFAQ 87
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 49.3 bits (116), Expect = 4e-06 Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 3/73 (4%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEARYNLDGR 264 TR+YVG L + + DLE F +YG++ V + FAFVEF DA++A L+G Sbjct: 7 TRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGS 66 Query: 265 DFDGSRMIVEFAK 303 + GS++ VE +K Sbjct: 67 ELLGSQLRVEISK 79
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 48.9 bits (115), Expect = 5e-06 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 14/90 (15%) Frame = +1 Query: 58 PRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------- 198 P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 144 PKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSK 203 Query: 199 -FAFVEFSDPRDADEARYNLDGRDFDGSRM 285 +A+VEF +P +A++A ++DG DG + Sbjct: 204 GYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 48.9 bits (115), Expect = 5e-06 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 14/90 (15%) Frame = +1 Query: 58 PRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------- 198 P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 144 PKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSK 203 Query: 199 -FAFVEFSDPRDADEARYNLDGRDFDGSRM 285 +A+VEF +P +A++A ++DG DG + Sbjct: 204 GYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 48.9 bits (115), Expect = 5e-06 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 14/90 (15%) Frame = +1 Query: 58 PRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------- 198 P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 144 PKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSK 203 Query: 199 -FAFVEFSDPRDADEARYNLDGRDFDGSRM 285 +A+VEF +P +A++A ++DG DG + Sbjct: 204 GYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 48.9 bits (115), Expect = 5e-06 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 14/90 (15%) Frame = +1 Query: 58 PRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------- 198 P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 144 PKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSK 203 Query: 199 -FAFVEFSDPRDADEARYNLDGRDFDGSRM 285 +A+VEF +P +A++A ++DG DG + Sbjct: 204 GYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 48.9 bits (115), Expect = 5e-06 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 14/90 (15%) Frame = +1 Query: 58 PRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------- 198 P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 144 PKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSK 203 Query: 199 -FAFVEFSDPRDADEARYNLDGRDFDGSRM 285 +A+VEF +P +A++A ++DG DG + Sbjct: 204 GYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 47.8 bits (112), Expect = 1e-05 Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 14/92 (15%) Frame = +1 Query: 52 RMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE------ 198 + P+ DE++R + T++++GRL + ++F YG+++ +DM + Sbjct: 119 KQPKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHL 178 Query: 199 ---FAFVEFSDPRDADEARYNLDGRDFDGSRM 285 +A+VEF P +A++A ++DG DG + Sbjct: 179 SKGYAYVEFEAPEEAEKALKHMDGGQIDGQEI 210
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 47.8 bits (112), Expect = 1e-05 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +1 Query: 88 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 243 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 244 RYNLDGRDFDGSRMIVEFAK 303 +DG DG + V+ A+ Sbjct: 71 MDAMDGAVLDGRELRVQMAR 90
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 47.8 bits (112), Expect = 1e-05 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +1 Query: 88 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 243 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 244 RYNLDGRDFDGSRMIVEFAK 303 +DG DG + V+ A+ Sbjct: 71 MDAMDGAVLDGRELRVQMAR 90
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 47.8 bits (112), Expect = 1e-05 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +1 Query: 88 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 243 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 244 RYNLDGRDFDGSRMIVEFAK 303 +DG DG + V+ A+ Sbjct: 71 MDAMDGAVLDGRELRVQMAR 90
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 47.8 bits (112), Expect = 1e-05 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +1 Query: 88 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 243 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 244 RYNLDGRDFDGSRMIVEFAK 303 +DG DG + V+ A+ Sbjct: 71 MDAMDGAVLDGRELRVQMAR 90
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 47.8 bits (112), Expect = 1e-05 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +1 Query: 88 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 243 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71 Query: 244 RYNLDGRDFDGSRMIVEFAK 303 +DG DG + V+ A+ Sbjct: 72 MDAMDGAVLDGRELRVQMAR 91
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 47.0 bits (110), Expect = 2e-05 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Frame = +1 Query: 70 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRH--VDMKHEFAFVEFSDPRDADEA 243 E ++ G RLY+G L S +L++LF YG + ++ + FAF++ +A+ A Sbjct: 105 EEIKFSGRNRLYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDYRANAERA 164 Query: 244 RYNLDGRDFDGSRMIVEFA 300 + +LDGR + + FA Sbjct: 165 KKDLDGRMRKNKPIRIRFA 183
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 46.6 bits (109), Expect = 3e-05 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDPRDADEARYNLD 258 RL+V +P R R DL +FG++G++ V++ F FV F + DAD AR L Sbjct: 117 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 176 Query: 259 GRDFDGSRMIVEFA 300 G +G ++ V A Sbjct: 177 GTVVEGRKIEVNNA 190
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 46.6 bits (109), Expect = 3e-05 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDPRDADEARYNLD 258 RL+V +P R R DL +FG++G++ V++ F FV F + DAD AR L Sbjct: 118 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 177 Query: 259 GRDFDGSRMIVEFA 300 G +G ++ V A Sbjct: 178 GTVVEGRKIEVNNA 191
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 46.6 bits (109), Expect = 3e-05 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDPRDADEARYNLD 258 RL+V +P R R DL +FG++G++ V++ F FV F + DAD AR L Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 181 Query: 259 GRDFDGSRMIVEFA 300 G +G ++ V A Sbjct: 182 GTVVEGRKIEVNNA 195
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 45.1 bits (105), Expect = 8e-05 Identities = 23/80 (28%), Positives = 47/80 (58%), Gaps = 7/80 (8%) Frame = +1 Query: 85 GGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF-------AFVEFSDPRDADEA 243 G ++++ + LP +DL +LFG +G+++ V + +F AFVEF+ ++A+ A Sbjct: 714 GKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETA 773 Query: 244 RYNLDGRDFDGSRMIVEFAK 303 L+G G R+++++A+ Sbjct: 774 MSQLEGVHLLGRRLVMQYAE 793 Score = 30.4 bits (67), Expect = 1.9 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 8/68 (11%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 252 RL++ + D LF +YG + V + + F +V+F DA A + Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370 Query: 253 LDGRDFDG 276 LD + F G Sbjct: 371 LDKQIFQG 378 Score = 29.6 bits (65), Expect = 3.3 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM-------KHEFAFVEFSDPRDADEARYN 252 +RL V LP L + F + G V V + +FAF+ + A+ A Sbjct: 2 SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKY 61 Query: 253 LDGRDFDGSRMIVEFAK 303 + D +R+ VEFAK Sbjct: 62 FNKSFIDTARIEVEFAK 78
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 45.1 bits (105), Expect = 8e-05 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 246 + RL+V L T+ +LE +F +G++ + + + FA+V+++DP A EA Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAY 353 Query: 247 YNLDGRDFDG 276 NLDG+ F G Sbjct: 354 RNLDGKIFQG 363 Score = 43.1 bits (100), Expect = 3e-04 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYN 252 T++ + LP + +D+ LFG YG++R V + + F F +F R+A+ A Sbjct: 697 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDA 756 Query: 253 LDGRDFDGSRMIVEFA 300 L G R+++EFA Sbjct: 757 LKNTHLLGRRLVLEFA 772
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 +++VG + + +++L LF R GRV D+ ++AFV DA A L+G++ G Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 277 SRMIVEFA 300 R+ VE + Sbjct: 140 KRINVELS 147 Score = 28.9 bits (63), Expect = 5.7 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = +1 Query: 97 RLYVGRLPSRTRT-RDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF- 270 +++VG + T +L LF YG V + +FAFV + A A L G + Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61 Query: 271 DGSRMIVEFAK 303 G ++VE ++ Sbjct: 62 PGRALVVEMSR 72
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 +++VG + + +++L LF R GRV D+ ++AFV DA A L+G++ G Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 277 SRMIVEFA 300 R+ VE + Sbjct: 140 KRINVELS 147 Score = 29.3 bits (64), Expect = 4.3 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = +1 Query: 97 RLYVGRLPSRTRT-RDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF- 270 +++VG + T +L LF YG V + +FAFV + A A L G + Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61 Query: 271 DGSRMIVEFAK 303 G ++VE ++ Sbjct: 62 PGRALVVEMSR 72
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 +++VG + + +++L LF R GRV D+ ++AFV DA A L+G++ G Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 277 SRMIVEFA 300 R+ VE + Sbjct: 140 KRINVELS 147 Score = 28.9 bits (63), Expect = 5.7 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = +1 Query: 97 RLYVGRLPSRTRT-RDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF- 270 +++VG + T +L LF YG V + +FAFV + A A L G + Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61 Query: 271 DGSRMIVEFAK 303 G ++VE ++ Sbjct: 62 PGRALVVEMSR 72
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 276 +++VG + + +++L LF R GRV D+ ++AFV DA A L+G++ G Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 277 SRMIVEFA 300 R+ VE + Sbjct: 140 KRINVELS 147 Score = 29.3 bits (64), Expect = 4.3 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = +1 Query: 97 RLYVGRLPSRTRT-RDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF- 270 +++VG + T +L LF YG V + +FAFV + A A L G + Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61 Query: 271 DGSRMIVEFAK 303 G ++VE ++ Sbjct: 62 PGRALVVEMSR 72
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 44.7 bits (104), Expect = 1e-04 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 15/100 (15%) Frame = +1 Query: 46 SHRMPRYDERDRYGGNTR-------LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-- 198 SH R R+ GN L V L T RDL ++F +YG + V + ++ Sbjct: 95 SHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ 154 Query: 199 ------FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFA 300 FAFV F + DA EA+ +G + DG R+ V+F+ Sbjct: 155 SRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 44.7 bits (104), Expect = 1e-04 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 15/100 (15%) Frame = +1 Query: 46 SHRMPRYDERDRYGGNTR-------LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-- 198 SH R R+ GN L V L T RDL ++F +YG + V + ++ Sbjct: 95 SHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ 154 Query: 199 ------FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFA 300 FAFV F + DA EA+ +G + DG R+ V+F+ Sbjct: 155 SRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 44.7 bits (104), Expect = 1e-04 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 15/100 (15%) Frame = +1 Query: 46 SHRMPRYDERDRYGGNTR-------LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-- 198 SH R R+ GN L V L T RDL ++F +YG + V + ++ Sbjct: 95 SHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ 154 Query: 199 ------FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFA 300 FAFV F + DA EA+ +G + DG R+ V+F+ Sbjct: 155 SRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 43.9 bits (102), Expect = 2e-04 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%) Frame = +1 Query: 88 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDPRDADEARY 249 G RL+V +P R R DL+ +F ++G V V++ F FV P+DA+ AR Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQ 210 Query: 250 NLDGRDFDGSRMIVEFA 300 L G +G ++ V A Sbjct: 211 ELHGSMIEGRKIEVNCA 227
>NONA_DROLR (Q9GRX4) Protein no-on-transient A| Length = 698 Score = 43.9 bits (102), Expect = 2e-04 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 4/89 (4%) Frame = +1 Query: 46 SHRMPRYD--ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHV--DMKHEFAFVE 213 +H +P + + ++ G RLYVG L + +L ++F YG + + +++ F F++ Sbjct: 263 THELPPIEVAQETKFSGRNRLYVGNLTNDITDEELREMFKPYGEIGEIFSNLEKNFTFLK 322 Query: 214 FSDPRDADEARYNLDGRDFDGSRMIVEFA 300 +A++A+ LDG G ++ V FA Sbjct: 323 VDYHINAEKAKRALDGSMRKGRQLRVRFA 351
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 43.1 bits (100), Expect = 3e-04 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYN 252 T++ + LP + +D+ LFG YG++R V + + F F +F R+A+ A Sbjct: 702 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDA 761 Query: 253 LDGRDFDGSRMIVEFA 300 L G R+++EFA Sbjct: 762 LKNTHLLGRRLVLEFA 777 Score = 43.1 bits (100), Expect = 3e-04 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 8/73 (10%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 246 ++RL+V LP DLE +F ++G++ + + + FA+V++ +P A +A Sbjct: 300 SSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAY 359 Query: 247 YNLDGRDFDGSRM 285 LDG+ F G M Sbjct: 360 KELDGKHFQGRLM 372 Score = 32.7 bits (73), Expect = 0.39 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Frame = +1 Query: 73 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM--KHEFAFVEFSDPRDADEAR 246 + R GNT + V + DL LF YG++ + M A VEF+ P +A +A Sbjct: 477 KQRERGNTAILVKNFSYGVKVDDLRKLFEPYGQITRLLMPPSGTIAIVEFARPDEAQKAF 536 Query: 247 YNLDGRDFDGSRMIVEFA 300 L R S + +E A Sbjct: 537 KGLAYRKVGDSILFLEKA 554
>NONA_DROVI (Q9GRW7) Protein no-on-transient A| Length = 697 Score = 43.1 bits (100), Expect = 3e-04 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 4/89 (4%) Frame = +1 Query: 46 SHRMPRYD--ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHV--DMKHEFAFVE 213 +H +P + + ++ G RLYVG L + +L ++F YG + + +++ F F++ Sbjct: 267 THELPPIEVAQETKFSGRNRLYVGNLTNDITDEELREMFKPYGEIGEIFSNLEKNFTFLK 326 Query: 214 FSDPRDADEARYNLDGRDFDGSRMIVEFA 300 +A++A+ LDG G + V FA Sbjct: 327 VDYHINAEKAKRPLDGSMRKGRHVRVRFA 355
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 42.7 bits (99), Expect = 4e-04 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHV-------DMKHEFAFVEFSDPRDADEARYNL 255 +L++G L T + L+ +FG++G + V FAF+ F +P DA A ++ Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68 Query: 256 DGRDFDGSRMIVEFAK 303 +G+ G + VE AK Sbjct: 69 NGKSLHGKAIKVEQAK 84
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 42.4 bits (98), Expect = 5e-04 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 8/90 (8%) Frame = +1 Query: 58 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVE 213 P R + + R+YVG LP T LE LF +G+V R F FV Sbjct: 137 PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVT 196 Query: 214 FSDPRDADEARYNLDGRDFDGSRMIVEFAK 303 S + ++A LDG+ DG + V A+ Sbjct: 197 MSSESEVNDAIAALDGQTLDGRAVRVNVAE 226 Score = 35.4 bits (80), Expect = 0.061 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 8/76 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 +L+VG LP + L +F G V R D F FV S +A++A Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115 Query: 253 LDGRDFDGSRMIVEFA 300 L+G D DG ++ V A Sbjct: 116 LNGYDMDGRQLTVNKA 131
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 42.4 bits (98), Expect = 5e-04 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 8/93 (8%) Frame = +1 Query: 46 SHRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------F 201 S+R R NT L V L T RDL ++F RYG + V++ ++ F Sbjct: 103 SNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGF 162 Query: 202 AFVEFSDPRDADEARYNLDGRDFDGSRMIVEFA 300 AFV F D+ EA +G + DG R+ V+++ Sbjct: 163 AFVYFERIDDSKEAMERANGMELDGRRIRVDYS 195
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 42.4 bits (98), Expect = 5e-04 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 8/93 (8%) Frame = +1 Query: 46 SHRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------F 201 S+R R NT L V L T RDL ++F RYG + V++ ++ F Sbjct: 101 SNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGF 160 Query: 202 AFVEFSDPRDADEARYNLDGRDFDGSRMIVEFA 300 AFV F D+ EA +G + DG R+ V+++ Sbjct: 161 AFVYFERIDDSKEAMERANGMELDGRRIRVDYS 193
>RALY_HUMAN (Q9UKM9) RNA-binding protein Raly (hnRNP associated with lethal| yellow homolog) (Autoantigen p542) Length = 306 Score = 42.0 bits (97), Expect = 6e-04 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +1 Query: 91 NTRLYVGRLPSR-TRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 267 N+R+++G L + + D+E +F +YGRV + +AFV++S+ R A A +GR Sbjct: 20 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRV 79 Query: 268 FDGSRMIVEFA 300 G + + A Sbjct: 80 LAGQTLDINMA 90
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 42.0 bits (97), Expect = 6e-04 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 7/76 (9%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF-------AFVEFSDPRDADEARYNL 255 ++ V LP +D+ +LF +G+++ V + +F AFVEF P++A+ A L Sbjct: 753 KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQL 812 Query: 256 DGRDFDGSRMIVEFAK 303 G G R+++EF + Sbjct: 813 QGVHLLGRRLVMEFVE 828
>HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (hnRNP core| protein C) Length = 282 Score = 42.0 bits (97), Expect = 6e-04 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +1 Query: 91 NTRLYVGRLPSRT-RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 267 N+R+++G L + + D+E +F +YG++ + FAFV+FS+ R A A DGR Sbjct: 16 NSRVFIGNLNTLVVKKTDVEAIFSKYGKIVGCSVHKGFAFVQFSNERTARTAVAGEDGRM 75 Query: 268 FDGSRMIVEFA 300 G + + A Sbjct: 76 IAGQVLDINLA 86
>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III| Length = 654 Score = 42.0 bits (97), Expect = 6e-04 Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 2/47 (4%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDM--KHEFAFVEFSDPRDA 234 +++G LPS +++E+ FG++G++ H+ + K AFV F + RDA Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDA 347
>RNP1_YEAST (P32385) Ribonucleoprotein 1| Length = 249 Score = 41.6 bits (96), Expect = 8e-04 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 9/74 (12%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLF-GRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 252 LYVG LP R +DL DLF YG++ +K + FAF+EF + + + + Sbjct: 37 LYVGNLPKNCRKQDLRDLFEPNYGKITINMLKKKPLKKPLKRFAFIEFQEGVNLKKVKEK 96 Query: 253 LDGRDFDGSRMIVE 294 ++G+ F ++++E Sbjct: 97 MNGKIFMNEKIVIE 110
>NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3| Length = 802 Score = 41.6 bits (96), Expect = 8e-04 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 29/99 (29%) Frame = +1 Query: 34 PPL----RSHRMPRYD--------ERDRYGG----------------NTRLYVGRLPSRT 129 PPL R R PR D E DRY +RL++G LP + Sbjct: 282 PPLSDAQRRMRFPRADLSKPITEEEHDRYAAYLHGENKITEMHNIPPKSRLFIGNLPLKN 341 Query: 130 RTR-DLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEA 243 ++ DL +F YG + +++K+ F F++F +P+ +A Sbjct: 342 VSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDA 380
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 41.2 bits (95), Expect = 0.001 Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 8/95 (8%) Frame = +1 Query: 43 RSHRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHE 198 R R PR Y R+YVG LP LE LF +G+V R Sbjct: 232 RPERAPRV-----YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRG 286 Query: 199 FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 303 F FV SD + +EA LDG++ +G + V A+ Sbjct: 287 FGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 41.2 bits (95), Expect = 0.001 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 255 L+V +L T+ DLE +F R+G++ ++ + +AF+EF +D ++A + + Sbjct: 250 LFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAYFKM 309 Query: 256 DGRDFDGSRMIVEFAK 303 G D R+ V+F++ Sbjct: 310 QGVLIDDHRIHVDFSQ 325
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 41.2 bits (95), Expect = 0.001 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 8/80 (10%) Frame = +1 Query: 88 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEA 243 G T L + L +T DL F RYG + V + + F FV F + RDA+ A Sbjct: 17 GLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHA 76 Query: 244 RYNLDGRDFDGSRMIVEFAK 303 DG+ DG + V AK Sbjct: 77 LDRTDGKLVDGRELRVTLAK 96
>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)| Length = 700 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Frame = +1 Query: 79 RYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHV--DMKHEFAFVEFSDPRDADEARYN 252 ++ G RLYVG L + +L ++F YG + + ++ F F++ +A++A+ Sbjct: 297 KFSGRNRLYVGNLTNDITDDELREMFKPYGEISEIFSNLDKNFTFLKVDYHPNAEKAKRA 356 Query: 253 LDGRDFDGSRMIVEFA 300 LDG G ++ V FA Sbjct: 357 LDGSMRKGRQLRVRFA 372
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 12/81 (14%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE------------FAFVEFSDPRDADE 240 R++VGRL + T+ ++ LF G VR V + AFV F++ D D+ Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104 Query: 241 ARYNLDGRDFDGSRMIVEFAK 303 A L+G+ D ++V+ A+ Sbjct: 105 AIETLNGKTLDDREIVVQKAR 125
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 7/79 (8%) Frame = +1 Query: 85 GGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEA 243 GG+T++ + LP RD+ DLF G+++ V + + F FVE+S R+A A Sbjct: 716 GGSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSA 775 Query: 244 RYNLDGRDFDGSRMIVEFA 300 L G ++++++ Sbjct: 776 MEALKHTHLLGRHLVLQWS 794 Score = 30.4 bits (67), Expect = 1.9 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 8/68 (11%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 252 RL++ LP ++ F +G V+ V + + AFV FSDP A A Sbjct: 315 RLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRA 374 Query: 253 LDGRDFDG 276 DG F G Sbjct: 375 KDGSTFQG 382
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 41.2 bits (95), Expect = 0.001 Identities = 19/68 (27%), Positives = 36/68 (52%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDGS 279 L+V L + LE F ++G++ V ++AF+ F + A +A ++G+D +G Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 399 Query: 280 RMIVEFAK 303 + + FAK Sbjct: 400 NIEIVFAK 407
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 40.8 bits (94), Expect = 0.001 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 8/95 (8%) Frame = +1 Query: 43 RSHRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHE 198 R R PR E+ + R+YVG +P LE LF +G+V R Sbjct: 218 RPERPPRTFEQ-----SYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRG 272 Query: 199 FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 303 F FV + + +A NLDG+ DG + V A+ Sbjct: 273 FGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 40.8 bits (94), Expect = 0.001 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 +L+VG L T + LE +F +YG++ R F FV F + DA +A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 253 LDGRDFDGSRMIVEFA 300 ++G+ DG ++ V+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.8 bits (94), Expect = 0.001 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 +L+VG L T + LE +F +YG++ R F FV F + DA +A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 253 LDGRDFDGSRMIVEFA 300 ++G+ DG ++ V+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 40.8 bits (94), Expect = 0.001 Identities = 19/68 (27%), Positives = 36/68 (52%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDGS 279 L+V L + LE F ++G++ V ++AF+ F + A +A ++G+D +G Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 309 Query: 280 RMIVEFAK 303 + + FAK Sbjct: 310 NIEIVFAK 317
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 40.8 bits (94), Expect = 0.001 Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 7/76 (9%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF-------AFVEFSDPRDADEARYNL 255 ++ V LP +D+ +LF +G+++ V + +F AFVEF P++A+ A L Sbjct: 764 KIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQL 823 Query: 256 DGRDFDGSRMIVEFAK 303 G G R+++++A+ Sbjct: 824 HGVHLLGRRLVMQYAE 839 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 8/68 (11%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 252 RL++ + ++ D LF +G + V + + FA+V F D ++A A Sbjct: 346 RLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVE 405 Query: 253 LDGRDFDG 276 LD + F G Sbjct: 406 LDKQIFQG 413
>RALY_MOUSE (Q64012) RNA-binding protein Raly (hnRNP associated with lethal| yellow protein) (Maternally expressed hnRNP C-related protein) Length = 312 Score = 40.8 bits (94), Expect = 0.001 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +1 Query: 91 NTRLYVGRLPSRT-RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 267 N+R+++G L + + D+E +F +YGRV + +AFV++++ R A A +GR Sbjct: 20 NSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERHARAAVLGENGRV 79 Query: 268 FDGSRMIVEFA 300 G + + A Sbjct: 80 LAGQTLDINMA 90
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 40.8 bits (94), Expect = 0.001 Identities = 19/68 (27%), Positives = 36/68 (52%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDGS 279 L+V L + LE F ++G++ V ++AF+ F + A +A ++G+D +G Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 399 Query: 280 RMIVEFAK 303 + + FAK Sbjct: 400 NIEIVFAK 407
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 40.4 bits (93), Expect = 0.002 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 8/94 (8%) Frame = +1 Query: 46 SHRMPRYDERDRYGG-NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF------- 201 SHR +++ N ++ V LP +D+ +LF +G+++ V + +F Sbjct: 721 SHRQGNAGSQEKKKAKNGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGF 780 Query: 202 AFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 303 AFVEF P++A+ A L G G R++++ A+ Sbjct: 781 AFVEFVLPKEAENAMDQLQGVHLLGRRLVMQPAE 814 Score = 30.8 bits (68), Expect = 1.5 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 252 RL++ + + D + LF YG ++ V + + FA+V F+ P +A +A Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIE 385 Query: 253 LDGRDFDG 276 LD + F G Sbjct: 386 LDKQIFQG 393
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 12/84 (14%) Frame = +1 Query: 58 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVE 213 PR ++ + GG ++++G LPS DL F RYG+V V + ++ F F+ Sbjct: 84 PRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLS 143 Query: 214 FSDPRDAD----EARYNLDGRDFD 273 F + + E NL+G+ + Sbjct: 144 FEEESSVEHVTNERYINLNGKQVE 167
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 7/90 (7%) Frame = +1 Query: 55 MPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF-------AFVE 213 +P+ + + + ++ V LP +D+ +LF +G+++ V + +F AFVE Sbjct: 699 LPKTSKGSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVE 758 Query: 214 FSDPRDADEARYNLDGRDFDGSRMIVEFAK 303 F P +A+ A L G G R+++++A+ Sbjct: 759 FLLPSEAENAMDQLQGVHLLGRRLVMQYAE 788 Score = 31.2 bits (69), Expect = 1.1 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 8/68 (11%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 252 RL++ + D + LF YG + V + + FA+V F DP A A Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIE 361 Query: 253 LDGRDFDG 276 LD + F G Sbjct: 362 LDKQIFQG 369
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 40.0 bits (92), Expect = 0.002 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 255 L+V +L T DLE +F R+G +R ++ + +AF+EF D ++A + + Sbjct: 242 LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKM 301 Query: 256 DGRDFDGSRMIVEFAK 303 D D R+ V+F++ Sbjct: 302 DNVLIDDRRIHVDFSQ 317
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 40.0 bits (92), Expect = 0.002 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 255 L+V +L T DLE +F R+G +R ++ + +AF+EF D ++A + + Sbjct: 242 LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKM 301 Query: 256 DGRDFDGSRMIVEFAK 303 D D R+ V+F++ Sbjct: 302 DNVLIDDRRIHVDFSQ 317
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKH-----EFAFVEFSDPRDADEARYNLDGR 264 L++G L T DL ++F R+G + +D+K ++AF+++ D +A +DG Sbjct: 440 LFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGE 499 Query: 265 DFDGSRMIVEFAK 303 +R+ + F K Sbjct: 500 YLGNNRLKLGFGK 512 Score = 33.1 bits (74), Expect = 0.30 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYNLD 258 L+VG LP R + + F RYGRV V + + AFV+F D + A +A +++ Sbjct: 8 LWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKAHNSVN 67
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 40.0 bits (92), Expect = 0.002 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%) Frame = +1 Query: 61 RYDERDRYGGNTR---LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFV 210 R ERD T+ +YV L T DL++ FG YG++ + + F FV Sbjct: 201 RRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFV 260 Query: 211 EFSDPRDADEARYNLDGRDFDGSRMIV 291 F + DA A +L+G FD V Sbjct: 261 NFENADDAARAVESLNGHKFDDKEWYV 287 Score = 34.3 bits (77), Expect = 0.13 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 8/65 (12%) Frame = +1 Query: 88 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEA 243 GNT LYVG L L D FG+ G V V + + + +V F++P+DA A Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93 Query: 244 RYNLD 258 L+ Sbjct: 94 IQELN 98
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKH-----EFAFVEFSDPRDADEARYNLDGR 264 L++G L T DL ++F R+G + +D+K ++AF+++ D +A +DG Sbjct: 441 LFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGE 500 Query: 265 DFDGSRMIVEFAK 303 +R+ + F K Sbjct: 501 YLGNNRLKLGFGK 513 Score = 33.1 bits (74), Expect = 0.30 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYNLD 258 L+VG LP R + + F RYGRV V + + AFV+F D + A +A +++ Sbjct: 8 LWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKAHNSVN 67
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.0 bits (92), Expect = 0.002 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 +L+VG L T + LE +F +YG++ R F FV F + DA +A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 253 LDGRDFDGSRMIVEFA 300 ++G+ DG ++ V+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.0 bits (92), Expect = 0.002 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 +L+VG L T + LE +F +YG++ R F FV F + DA +A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 253 LDGRDFDGSRMIVEFA 300 ++G+ DG ++ V+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.0 bits (92), Expect = 0.002 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 +L+VG L T + LE +F +YG++ R F FV F + DA +A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 253 LDGRDFDGSRMIVEFA 300 ++G+ DG ++ V+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 39.7 bits (91), Expect = 0.003 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%) Frame = +1 Query: 67 DERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSD 222 +E + + RL+V LP + DLE LF +YG + + + FAF+ F Sbjct: 393 EEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMF 452 Query: 223 PRDADEARYNLDGRDFDGSRMIV 291 P A +A +DG+ F G + V Sbjct: 453 PEHAVKAYSEVDGQVFQGRMLHV 475 Score = 35.8 bits (81), Expect = 0.046 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMK-------HEFAFVEFSDPRDADEARYN 252 +RL V LP+ + LF +G + +K +F F+ F +A +A+ + Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61 Query: 253 LDGRDFDGSRMIVEFAK 303 + D SR+ VEF K Sbjct: 62 FNKSFIDTSRITVEFCK 78 Score = 32.3 bits (72), Expect = 0.51 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKH--EFAFVEFSDPRDADEARYNLDGRD 267 T + V LP+ T +L++ FGR+G + V + A VEF +P +A +A +L Sbjct: 587 TVILVKNLPAGTLAAELQETFGRFGSLGRVLLPEGGTTAIVEFLEPLEARKAFRHLAYSK 646 Query: 268 FDGSRMIVEFA 300 F + +E+A Sbjct: 647 FHHVPLYLEWA 657 Score = 31.6 bits (70), Expect = 0.87 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 11/90 (12%) Frame = +1 Query: 67 DERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----------FAFVE 213 +E + G T L++ L T L+++F + G V+ + + F FVE Sbjct: 722 EEEESLPGCT-LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVE 780 Query: 214 FSDPRDADEARYNLDGRDFDGSRMIVEFAK 303 + P A +A L G DG ++ V ++ Sbjct: 781 YRKPEQAQKALKQLQGHVVDGHKLEVRISE 810
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 39.7 bits (91), Expect = 0.003 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 8/97 (8%) Frame = +1 Query: 34 PPLRSHRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM-------- 189 P + R Y + D ++Y+ LP + +L +G + + Sbjct: 290 PEVSQKRSDDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGS 349 Query: 190 KHEFAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFA 300 F F EF +P DA+ A LDG+D G+++ +FA Sbjct: 350 SKGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 39.7 bits (91), Expect = 0.003 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 R +VG L T R LE F +YG V R F FV F D + +A Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 253 LDGRDFDGSRMIVEFAK 303 ++G+D DG + V A+ Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 39.7 bits (91), Expect = 0.003 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 255 L+V +L T DLE +F R+G++ ++ + +AF+EF D + +EA + Sbjct: 255 LFVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEAYSKM 314 Query: 256 DGRDFDGSRMIVEFAK 303 D D R+ V+F++ Sbjct: 315 DSVLIDDRRIHVDFSQ 330
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 39.3 bits (90), Expect = 0.004 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 R+YVG +P LE +F +G+V R F FV S + EA N Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251 Query: 253 LDGRDFDGSRMIVEFAK 303 LDG+ DG + V A+ Sbjct: 252 LDGQTLDGRTIRVNAAE 268 Score = 32.3 bits (72), Expect = 0.51 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 13/71 (18%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA- 243 + +L+VG LP + L LF + G V R D F FV S +AD+A Sbjct: 96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAV 155 Query: 244 ----RYNLDGR 264 +Y+L+GR Sbjct: 156 ELYSQYDLNGR 166
>HNRPC_HUMAN (P07910) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 306 Score = 39.3 bits (90), Expect = 0.004 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +1 Query: 91 NTRLYVGRLPSRT-RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 267 N+R+++G L + + D+E +F +YG++ + FAFV++ + R+A A DGR Sbjct: 15 NSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRM 74 Query: 268 FDGSRMIVEFA 300 G + + A Sbjct: 75 IAGQVLDINLA 85
>HNRPC_MOUSE (Q9Z204) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 313 Score = 39.3 bits (90), Expect = 0.004 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +1 Query: 91 NTRLYVGRLPSRT-RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 267 N+R+++G L + + D+E +F +YG++ + FAFV++ + R+A A DGR Sbjct: 15 NSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRM 74 Query: 268 FDGSRMIVEFA 300 G + + A Sbjct: 75 IAGQVLDINLA 85
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 39.3 bits (90), Expect = 0.004 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 7/78 (8%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARY 249 N +Y LP T DL DLF G+V + +++++ A VE+ + DAD Sbjct: 350 NRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVCIE 409 Query: 250 NLDGRDFDGSRMIVEFAK 303 L+ ++ G + + +AK Sbjct: 410 RLNNYNYGGCDLDISYAK 427 Score = 32.3 bits (72), Expect = 0.51 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Frame = +1 Query: 64 YDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDP 225 Y+E+ + ++VG L + DL + F + G+V D+ VEF++ Sbjct: 126 YEEKVNRNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSRGHHRGMGTVEFTNS 185 Query: 226 RDADEARYNLDGRDFDGSRMIV 291 D D A DG F ++ V Sbjct: 186 DDVDRAIRQYDGAFFMDRKIFV 207
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 38.9 bits (89), Expect = 0.005 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 +L+VG L T + LED F +G + R F F+ F++P A +A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 253 LDGRDFDGSRMIVEFA 300 ++G DG ++ V+ A Sbjct: 67 MNGESLDGRQIRVDHA 82
>SRP1_SCHPO (Q10193) Pre-mRNA-splicing factor srp1| Length = 275 Score = 38.9 bits (89), Expect = 0.005 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 9/77 (11%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDM-------KHEFAFVEFSDPRDADEARYNLD 258 LYV R R+L F +G + D+ FAFVE+ D RDA++A Y + Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68 Query: 259 GRDFD--GSRMIVEFAK 303 GR + G + VE+AK Sbjct: 69 GRRLERGGGVLRVEWAK 85
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 38.9 bits (89), Expect = 0.005 Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 255 L+V +L T+ DL+ +F R+G + ++ + +AF+EF + +D ++A + + Sbjct: 250 LFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKM 309 Query: 256 DGRDFDGSRMIVEFAK 303 G D R+ V+F++ Sbjct: 310 QGVLIDDHRIHVDFSQ 325
>HNRCL_HUMAN (O60812) Heterogeneous nuclear ribonucleoprotein C-like 1 (hnRNP| core protein C-like 1) Length = 293 Score = 38.9 bits (89), Expect = 0.005 Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Frame = +1 Query: 67 DERDRYGGNTRLYVGRLPSRT-RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEA 243 ++ D + N+R+++G L + + D+E +F +YG++ + FAFV++ ++A A Sbjct: 7 NKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAA 66 Query: 244 RYNLDGR 264 DGR Sbjct: 67 VAGEDGR 73
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 38.9 bits (89), Expect = 0.005 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDM--------KHEFAFVEFSDPRDADEARYNL 255 L+V +L TR+ DLE +F R+G++ ++ ++AF+EF DA+ A + + Sbjct: 264 LFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAERAYFKM 323 Query: 256 DGRDFDGSRMIVEFAK 303 D R+ V+F++ Sbjct: 324 QNVLVDDRRIWVDFSQ 339
>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 605 Score = 38.9 bits (89), Expect = 0.005 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 255 L+V +L T DLE +FGR+G++ ++ + +AF+E+ D + A + + Sbjct: 253 LFVCKLNPVTGDEDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIEYEDKASCEAAYFKM 312 Query: 256 DGRDFDGSRMIVEFAK 303 G D R+ V+F++ Sbjct: 313 QGVLIDDRRIHVDFSQ 328
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 38.5 bits (88), Expect = 0.007 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFG--RYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 273 LYV L T +E F + G V V ++AFV FS+ DA EA L+G+ D Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292 Query: 274 GSRMIVEFAK 303 GS + V AK Sbjct: 293 GSPIEVTLAK 302
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 38.5 bits (88), Expect = 0.007 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 11/108 (10%) Frame = +1 Query: 13 PLPRLGFPPLRSHRMPRYDERDRYGGNTR---LYVGRLPSRTRTRDLEDLFGRYGRVRHV 183 P G P RS + +++ N+R ++VG +P +L++ F R+G V V Sbjct: 84 PCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEV 143 Query: 184 DMKHE--------FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 303 M ++ F F+ F D + D+A N+ D G ++ V+ A+ Sbjct: 144 VMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVEVKRAE 190 Score = 31.2 bits (69), Expect = 1.1 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 12/71 (16%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDAD----E 240 +L+VG L T L F +YG V + + F FV+F DP Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 241 ARYNLDGRDFD 273 + LDGR+ D Sbjct: 71 RPHTLDGRNID 81
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 38.5 bits (88), Expect = 0.007 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFG--RYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 273 LYV L T +E F + G V V ++AFV FS+ DA EA L+G+ D Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292 Query: 274 GSRMIVEFAK 303 GS + V AK Sbjct: 293 GSPIEVTLAK 302
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 38.5 bits (88), Expect = 0.007 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRY--GRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 273 LYV L T +E F G V V ++AFV FS+ DA EA L+G+ D Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292 Query: 274 GSRMIVEFAK 303 GS + V AK Sbjct: 293 GSPIEVTLAK 302
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 38.5 bits (88), Expect = 0.007 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 255 L+V +L T+ DL +F R+G + ++ + +AF+EF + +D ++A + + Sbjct: 250 LFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKM 309 Query: 256 DGRDFDGSRMIVEFAK 303 G D R+ V+F++ Sbjct: 310 QGVLIDDHRIHVDFSQ 325
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 38.5 bits (88), Expect = 0.007 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 8/77 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 252 RL++ L DL+ LFG +G++ V M + FA+++F D DA A Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383 Query: 253 LDGRDFDGSRMIVEFAK 303 LD + F G + V AK Sbjct: 384 LDAKPFQGRLLHVLPAK 400
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 38.5 bits (88), Expect = 0.007 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRY--GRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 273 LYV L T +E F G V V ++AFV FS+ DA EA L+G+ D Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292 Query: 274 GSRMIVEFAK 303 GS + V AK Sbjct: 293 GSPIEVTLAK 302
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 38.5 bits (88), Expect = 0.007 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 +L++G L T LE F +YGR+ R F FV F + DA +A Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 253 LDGRDFDGSRMIVEFA 300 ++G+ DG ++ V+ A Sbjct: 66 MNGKSVDGRQIRVDQA 81
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 38.5 bits (88), Expect = 0.007 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%) Frame = +1 Query: 70 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDP 225 ERD + L V L TR +L DLF R+G ++ V + + FAFV + D Sbjct: 197 ERD---DSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDR 253 Query: 226 RDADEARYNLDGRDFDGSRMIVEFAK 303 A +AR LDG ++ + EF+K Sbjct: 254 DCAIKARDRLDGYGWNNLILRCEFSK 279
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 38.5 bits (88), Expect = 0.007 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%) Frame = +1 Query: 58 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVE 213 P D+ + L+V R+ T L F YG ++ + M + +AF+E Sbjct: 91 PHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIE 150 Query: 214 FSDPRDADEARYNLDGRDFDGSRMIVE 294 + RD A + DG+ DG R++V+ Sbjct: 151 YEHERDMHSAYKHADGKKIDGRRVLVD 177
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 38.1 bits (87), Expect = 0.009 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYNL 255 ++VG +P L+D+F G V R + F E+ D A A NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 256 DGRDFDGSRMIVEFA 300 +GR+F G + V+ A Sbjct: 78 NGREFSGRALRVDNA 92
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 38.1 bits (87), Expect = 0.009 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 R +VG L T R LE F +YG V R F FV F D + +A Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68 Query: 253 LDGRDFDGSRMIVEFAK 303 ++G+D DG + V A+ Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 38.1 bits (87), Expect = 0.009 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 10/80 (12%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 246 + LY+ LP +D+ED+F R+GR+ + + AF+ F +A+EA Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164 Query: 247 YNLDGRDFDGSR--MIVEFA 300 + +G GS + V+FA Sbjct: 165 TSFNGHKPPGSSEPITVKFA 184
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 38.1 bits (87), Expect = 0.009 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 8/75 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 252 RLYVG LP + L ++F G V +V++ ++ FAFV +A EA Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174 Query: 253 LDGRDFDGSRMIVEF 297 DG G + V F Sbjct: 175 FDGSQVGGRTVKVNF 189
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 38.1 bits (87), Expect = 0.009 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 8/81 (9%) Frame = +1 Query: 85 GGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADE 240 G RLYVG L LE+LF G+V R F FV S ++ + Sbjct: 254 GSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 313 Query: 241 ARYNLDGRDFDGSRMIVEFAK 303 A +L+G D DG ++ V A+ Sbjct: 314 AINSLNGADLDGRQIRVSEAE 334 Score = 33.9 bits (76), Expect = 0.18 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 8/77 (10%) Frame = +1 Query: 70 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDP 225 ER+ + + +L+VG L + L LF G V V++ ++ F FV S Sbjct: 91 ERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTA 150 Query: 226 RDADEARYNLDGRDFDG 276 + + A +G +F+G Sbjct: 151 AEVEAAAQQFNGYEFEG 167
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 38.1 bits (87), Expect = 0.009 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYNL 255 ++VG +P L+D+F G V R + F E+ D A A NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 256 DGRDFDGSRMIVEFA 300 +GR+F G + V+ A Sbjct: 78 NGREFSGRALRVDNA 92
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 37.7 bits (86), Expect = 0.012 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Frame = +1 Query: 70 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDP 225 E+ R+ + +L+VG LP + L LF R G V V++ ++ F FV S Sbjct: 79 EQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTK 138 Query: 226 RDADEARYNLDGRDFDG 276 + + A +G + DG Sbjct: 139 EEVEAAEQQFNGYEIDG 155 Score = 33.9 bits (76), Expect = 0.18 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 246 + R+YVG L L++LF G V + ++ F FV +S ++ ++A Sbjct: 206 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAI 265 Query: 247 YNLDGRDFDGSRMIVEFAK 303 +L+G D DG + V A+ Sbjct: 266 DSLNGVDLDGRSIRVSAAE 284
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 37.7 bits (86), Expect = 0.012 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 R +VG L T R LE F ++G + R F FV F D + +A Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 253 LDGRDFDGSRMIVEFAK 303 ++G+D DG + V A+ Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 37.7 bits (86), Expect = 0.012 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYNL 255 ++VG +P L+D+F G V R + F E+ D A A NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 256 DGRDFDGSRMIVEFA 300 +GR+F G + V+ A Sbjct: 78 NGREFSGRALRVDNA 92
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 37.7 bits (86), Expect = 0.012 Identities = 19/68 (27%), Positives = 34/68 (50%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDGS 279 L+V L + LE F +G++ V ++AFV F D A +A ++G++ +G Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGE 402 Query: 280 RMIVEFAK 303 + + AK Sbjct: 403 EIEIVLAK 410
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 37.7 bits (86), Expect = 0.012 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 8/77 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 R +VG L T LE+ F YG + R F FV FS +A N Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68 Query: 253 LDGRDFDGSRMIVEFAK 303 ++G++ DG + V A+ Sbjct: 69 MNGKELDGRNITVNQAQ 85
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 37.7 bits (86), Expect = 0.012 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYNL 255 ++VG +P L+D+F G V R + F E+ D A A NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 256 DGRDFDGSRMIVEFA 300 +GR+F G + V+ A Sbjct: 78 NGREFSGRALRVDNA 92
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 37.7 bits (86), Expect = 0.012 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%) Frame = +1 Query: 85 GGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADE 240 G R+YVG L LE LF G+V + ++ F FV + ++ Sbjct: 201 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 260 Query: 241 ARYNLDGRDFDGSRMIVEFAK 303 A +LDG D DG ++ V A+ Sbjct: 261 AIKSLDGADLDGRQIRVSEAE 281
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 37.7 bits (86), Expect = 0.012 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYNL 255 ++VG +P L+D+F G V R + F E+ D A A NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 256 DGRDFDGSRMIVEFA 300 +GR+F G + V+ A Sbjct: 78 NGREFSGRALRVDNA 92
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 37.7 bits (86), Expect = 0.012 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYNL 255 ++VG +P L+D+F G V R + F E+ D A A NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 256 DGRDFDGSRMIVEFA 300 +GR+F G + V+ A Sbjct: 78 NGREFSGRALRVDNA 92
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 37.4 bits (85), Expect = 0.016 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 R +VG L T LE F +G+V R F FV FS + +A N Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68 Query: 253 LDGRDFDGSRMIVEFAK 303 ++G++ DG + V A+ Sbjct: 69 MNGKELDGRNITVNQAQ 85
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 37.4 bits (85), Expect = 0.016 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 255 L+V R+ T L F YG ++ + M + +AF+E+ RD A + Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 256 DGRDFDGSRMIVE 294 DG+ DG R++V+ Sbjct: 165 DGKKIDGRRVLVD 177
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 37.4 bits (85), Expect = 0.016 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRV-------RHVDMKHEFAFVEFSDPRDADEARYN 252 T+L V LP +++ LF YG++ + FAF EFS ++A A + Sbjct: 704 TKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNAFNS 763 Query: 253 LDGRDFDGSRMIVEFAK 303 L G R++++FA+ Sbjct: 764 LKDTHILGRRLVIDFAQ 780
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 37.4 bits (85), Expect = 0.016 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 255 L+V R+ T L F YG ++ + M + +AF+E+ RD A + Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 256 DGRDFDGSRMIVE 294 DG+ DG R++V+ Sbjct: 165 DGKKIDGRRVLVD 177
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 37.4 bits (85), Expect = 0.016 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 8/87 (9%) Frame = +1 Query: 67 DERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSD 222 D + T L V LP +L+ LFG G + + + + FV + D Sbjct: 30 DSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89 Query: 223 PRDADEARYNLDGRDFDGSRMIVEFAK 303 P+DA++A L+G + V +A+ Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSYAR 116 Score = 34.3 bits (77), Expect = 0.13 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 246 + LYV LP ++LE LF +YGR+ + + F+ F +A+EA Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 247 YNLDGRDFDGSR--MIVEFA 300 L+G+ G+ + V+FA Sbjct: 184 KGLNGQKPPGATEPITVKFA 203
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 37.4 bits (85), Expect = 0.016 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYNL 255 L+V +L T+ DLE +F R+G++ + ++AF+EF + ++A + + Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305 Query: 256 DGRDFDGSRMIVEFAK 303 D SR+ V+F++ Sbjct: 306 QNVLIDDSRIHVDFSQ 321
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 37.4 bits (85), Expect = 0.016 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 8/76 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 +L+VG L T + LED F +G + R F F+ F++P A A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 253 LDGRDFDGSRMIVEFA 300 ++G DG ++ V+ A Sbjct: 67 MNGESLDGRQIRVDHA 82
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 37.4 bits (85), Expect = 0.016 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 8/93 (8%) Frame = +1 Query: 37 PLRSHRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE------ 198 P + + +E + + RL+V L + DLE LF YG + + + Sbjct: 381 PWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKP 440 Query: 199 --FAFVEFSDPRDADEARYNLDGRDFDGSRMIV 291 FAFV F P A +A +DG+ F G + V Sbjct: 441 KGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 473 Score = 32.0 bits (71), Expect = 0.67 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 7/77 (9%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMK-------HEFAFVEFSDPRDADEARYN 252 +RL V LP+ + LF +G + +K +F F+ F +A A + Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNH 61 Query: 253 LDGRDFDGSRMIVEFAK 303 D +R+ VEF K Sbjct: 62 FHRSFIDTTRITVEFCK 78 Score = 31.2 bits (69), Expect = 1.1 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 11/90 (12%) Frame = +1 Query: 67 DERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----------FAFVE 213 +E + G T L++ L T L+ +F + G ++ + + F FVE Sbjct: 714 EEEESIPGCT-LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVE 772 Query: 214 FSDPRDADEARYNLDGRDFDGSRMIVEFAK 303 + P A +A L G DG ++ V ++ Sbjct: 773 YKKPEQAQKALKQLQGHTVDGHKLEVRISE 802
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 37.4 bits (85), Expect = 0.016 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Frame = +1 Query: 70 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDP 225 E+ R+ + +L+VG LP + L LF R G V V++ ++ F FV S Sbjct: 80 EQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTK 139 Query: 226 RDADEARYNLDGRDFDG 276 + + A +G + DG Sbjct: 140 EEVEAAEQQFNGYEIDG 156 Score = 33.9 bits (76), Expect = 0.18 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 246 + R+YVG L L++LF G V + ++ F FV +S ++ ++A Sbjct: 207 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAI 266 Query: 247 YNLDGRDFDGSRMIVEFAK 303 +L+G D DG + V A+ Sbjct: 267 DSLNGIDLDGRSIRVSAAE 285
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 37.4 bits (85), Expect = 0.016 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 8/78 (10%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARY 249 T L V LP + + LFG G + + + + FV +SDP DAD+A Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98 Query: 250 NLDGRDFDGSRMIVEFAK 303 L+G + V +A+ Sbjct: 99 TLNGLKLQTKTIKVSYAR 116 Score = 33.1 bits (74), Expect = 0.30 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 8/66 (12%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 246 + LYV LP +++E LF +YGR+ + + F+ F +A+EA Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAI 183 Query: 247 YNLDGR 264 L+G+ Sbjct: 184 KGLNGQ 189
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 37.4 bits (85), Expect = 0.016 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 8/78 (10%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARY 249 T L V LP + + LFG G + + + + FV +SDP DAD+A Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98 Query: 250 NLDGRDFDGSRMIVEFAK 303 L+G + V +A+ Sbjct: 99 TLNGLKLQTKTIKVSYAR 116 Score = 32.7 bits (73), Expect = 0.39 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 8/66 (12%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 246 + LYV LP +++E LF +YGR+ + + F+ F +A+EA Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183 Query: 247 YNLDGR 264 L+G+ Sbjct: 184 KGLNGQ 189
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 37.4 bits (85), Expect = 0.016 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 8/87 (9%) Frame = +1 Query: 67 DERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSD 222 D + T L V LP +L+ LFG G + + + + FV + D Sbjct: 30 DSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89 Query: 223 PRDADEARYNLDGRDFDGSRMIVEFAK 303 P+DA++A L+G + V +A+ Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSYAR 116 Score = 34.3 bits (77), Expect = 0.13 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 246 + LYV LP ++LE LF +YGR+ + + F+ F +A+EA Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 247 YNLDGRDFDGSR--MIVEFA 300 L+G+ G+ + V+FA Sbjct: 184 KGLNGQKPPGATEPITVKFA 203
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 37.4 bits (85), Expect = 0.016 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 8/87 (9%) Frame = +1 Query: 67 DERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSD 222 D + T L V LP +L+ LFG G + + + + FV + D Sbjct: 30 DSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89 Query: 223 PRDADEARYNLDGRDFDGSRMIVEFAK 303 P+DA++A L+G + V +A+ Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSYAR 116 Score = 34.3 bits (77), Expect = 0.13 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 246 + LYV LP ++LE LF +YGR+ + + F+ F +A+EA Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 247 YNLDGRDFDGSR--MIVEFA 300 L+G+ G+ + V+FA Sbjct: 184 KGLNGQKPPGATEPITVKFA 203
>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein| Length = 124 Score = 37.0 bits (84), Expect = 0.021 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNL 255 N LYV LP + ++ D+FG+YG +R + + + AFV + D DA A +L Sbjct: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHL 77 Query: 256 DGRDFDGSRMIV 291 G + +IV Sbjct: 78 SGFNVANRYLIV 89
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 37.0 bits (84), Expect = 0.021 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 255 L+V +L T+ DLE +F R+G++ ++ + +AF+EF + A++A + + Sbjct: 248 LFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAAEQAYFKM 307 Query: 256 DGRDFDGSRMIVEFAK 303 D R+ V+F++ Sbjct: 308 QNVLVDDRRIWVDFSQ 323
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 37.0 bits (84), Expect = 0.021 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--FAFVEFSDPRDADEARYNLDGRD 267 +RL+VG LP ++ LF +YG+ V + + F F+ A+ A+ LD Sbjct: 74 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 133 Query: 268 FDGSRMIVEFA 300 G ++ V FA Sbjct: 134 LRGKQLRVRFA 144
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 37.0 bits (84), Expect = 0.021 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--FAFVEFSDPRDADEARYNLDGRD 267 +RL+VG LP ++ LF +YG+ V + + F F+ A+ A+ LD Sbjct: 76 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 135 Query: 268 FDGSRMIVEFA 300 G ++ V FA Sbjct: 136 LRGKQLRVRFA 146
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 37.0 bits (84), Expect = 0.021 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--FAFVEFSDPRDADEARYNLDGRD 267 +RL+VG LP ++ LF +YG+ V + + F F+ A+ A+ LD Sbjct: 74 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 133 Query: 268 FDGSRMIVEFA 300 G ++ V FA Sbjct: 134 LRGKQLRVRFA 144
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 37.0 bits (84), Expect = 0.021 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--FAFVEFSDPRDADEARYNLDGRD 267 +RL+VG LP ++ LF +YG+ V + + F F+ A+ A+ LD Sbjct: 79 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 138 Query: 268 FDGSRMIVEFA 300 G ++ V FA Sbjct: 139 LRGKQLRVRFA 149
>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein| Length = 138 Score = 37.0 bits (84), Expect = 0.021 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNL 255 N LY+ LP + T ++ ++FG++G VR + + + AFV + D DA A +L Sbjct: 18 NRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHL 77 Query: 256 DGRDFDGSRMIV 291 G + ++V Sbjct: 78 SGYNVSNRYLVV 89
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 36.6 bits (83), Expect = 0.027 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 246 + LY+ LP +D+ED+F R+GR+ + + AF+ F +A+EA Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164 Query: 247 YNLDGRDFDGSR--MIVEFA 300 + G GS + V+FA Sbjct: 165 TSFIGHKPPGSSEPITVKFA 184
>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (Pyrimidine-binding protein) (PYBP) Length = 555 Score = 36.6 bits (83), Expect = 0.027 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Frame = +1 Query: 88 GNTRLYVGRL-PSRTRTRDLEDLFGRYGRVRHVDM---KHEFAFVEFSDPRDADEARYNL 255 GN+ L V L P R + L LFG YG V+ V + K E A VE +D A A +L Sbjct: 359 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHL 418 Query: 256 DGRDFDGSRMIVEFAK 303 +G G + + +K Sbjct: 419 NGHKLHGKSVRITLSK 434
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 35.8 bits (81), Expect = 0.046 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 8/83 (9%) Frame = +1 Query: 67 DERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSD 222 +E + + +++VG LP + L +LF R G V V++ ++ F FV S Sbjct: 78 EEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSS 137 Query: 223 PRDADEARYNLDGRDFDGSRMIV 291 + + A +G + DG + V Sbjct: 138 KEEVEAACQQFNGYELDGRALRV 160 Score = 34.3 bits (77), Expect = 0.13 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 12/102 (11%) Frame = +1 Query: 34 PPLRSHRMPRYDERDRYGGN----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 198 PP + R GG+ R+YVG L LE LF G+V + ++ Sbjct: 164 PPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDR 223 Query: 199 -------FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 303 F FV +S + + A +LDG D +G + V A+ Sbjct: 224 DSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265
>SNRPA_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 281 Score = 35.8 bits (81), Expect = 0.046 Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Frame = +1 Query: 16 LPRLGFPP--LRSHRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYG---RVRH 180 +P PP L +MP N L++ LP T L LF ++ VR Sbjct: 179 IPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 238 Query: 181 VDMKHEFAFVEFSDPRDADEARYNLDG-RDFDGSRMIVEFAK 303 V +H+ AFVEF + A AR L G + + M + FAK Sbjct: 239 VPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 280
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 35.8 bits (81), Expect = 0.046 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYN 252 T +Y+ L+++FG+YG V + + F FV F DA +A Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDE 250 Query: 253 LDGRDFDGSRMIV 291 ++G+D +G M V Sbjct: 251 MNGKDMNGKSMFV 263
>SNRPA_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 286 Score = 35.8 bits (81), Expect = 0.046 Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Frame = +1 Query: 16 LPRLGFPP--LRSHRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYG---RVRH 180 +P PP L +MP N L++ LP T L LF ++ VR Sbjct: 184 IPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 243 Query: 181 VDMKHEFAFVEFSDPRDADEARYNLDG-RDFDGSRMIVEFAK 303 V +H+ AFVEF + A AR L G + + M + FAK Sbjct: 244 VPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 285
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 35.8 bits (81), Expect = 0.046 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 11/90 (12%) Frame = +1 Query: 58 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----------FA 204 P D+ + L+V R+ T L F YG ++ + + + +A Sbjct: 91 PHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYA 150 Query: 205 FVEFSDPRDADEARYNLDGRDFDGSRMIVE 294 F+E+ RD A + DG+ DG R++V+ Sbjct: 151 FIEYEHERDMHSAYKHADGKKIDGRRVLVD 180
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 35.8 bits (81), Expect = 0.046 Identities = 14/35 (40%), Positives = 24/35 (68%) Frame = +1 Query: 199 FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 303 F FV+FS P DA A+ ++ + DG+++ ++FAK Sbjct: 593 FGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 627
>RNP1_CAEEL (Q10667) RNA-binding protein rnp-1| Length = 305 Score = 35.8 bits (81), Expect = 0.046 Identities = 29/113 (25%), Positives = 41/113 (36%), Gaps = 1/113 (0%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 273 ++L+VG LP + L+ +F + +V D+ +AFV + D D L G D Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEED-DVDPIITRLTGYTID 61 Query: 274 GSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPG-SGRCFNCGIDGH 429 G +V K P PG RCF C D H Sbjct: 62 GK--VVNIKK--------------------STSKLRPTPGMPNRCFRCQSDEH 92
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 35.8 bits (81), Expect = 0.046 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 11/101 (10%) Frame = +1 Query: 34 PPLR---SHRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-- 198 P LR S R R N + V L TR DL++LF +G + + + + Sbjct: 216 PSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKT 275 Query: 199 ------FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 303 FAF+ F DA A + G +D + VE+AK Sbjct: 276 TGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 316
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 35.8 bits (81), Expect = 0.046 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 11/101 (10%) Frame = +1 Query: 34 PPLR---SHRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-- 198 P LR S R R N + V L TR DL++LF +G + + + + Sbjct: 216 PSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKT 275 Query: 199 ------FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 303 FAF+ F DA A + G +D + VE+AK Sbjct: 276 TGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 316
>SNRPA_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 282 Score = 35.8 bits (81), Expect = 0.046 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYG---RVRHVDMKHEFAFVEFSDPRDADEARYNLDG 261 N L++ LP T L LF ++ VR V +H+ AFVEF + A AR +L G Sbjct: 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQG 266 Query: 262 -RDFDGSRMIVEFAK 303 + + M + FAK Sbjct: 267 FKITQSNSMKISFAK 281
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 35.4 bits (80), Expect = 0.061 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 246 +T+L++G L T L D F +G V R F FV F+D A A Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 247 YNLDGRDFDGSRMIV 291 +DG++ +G + V Sbjct: 94 SEMDGKELNGRHIRV 108
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 35.4 bits (80), Expect = 0.061 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 R +VG L T +LE F ++G V R F FV F D + +A Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66 Query: 253 LDGRDFDGSRMIVEFAK 303 ++G++ DG + V A+ Sbjct: 67 MNGKELDGRTITVNEAQ 83
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 35.4 bits (80), Expect = 0.061 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 8/87 (9%) Frame = +1 Query: 67 DERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSD 222 +E+ R +V L S TR DL++LF RYG+V + + FV S Sbjct: 419 EEKGRSSCGRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMST 478 Query: 223 PRDADEARYNLDGRDFDGSRMIVEFAK 303 +A + +L + G + VE AK Sbjct: 479 AEEATKCINHLHKTELHGKMISVEKAK 505
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 35.4 bits (80), Expect = 0.061 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 255 L+VGRLP R+ LE+LF + G V+ + E F +V FS D A + Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 256 DGRDFDGSRMIVEFAK 303 F+G ++ V AK Sbjct: 65 --TTFEGCKINVTVAK 78 Score = 30.4 bits (67), Expect = 1.9 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYNL 255 RL + L + DL+ +F ++G V V++ + F FV+F + +A +A + Sbjct: 114 RLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGM 173 Query: 256 DGRDFDGSRMIVEFA 300 + ++ G + V++A Sbjct: 174 NMKEIKGRTVAVDWA 188
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 35.4 bits (80), Expect = 0.061 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 8/77 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 R +VG L T LE F ++G + R F FV F D + +A Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66 Query: 253 LDGRDFDGSRMIVEFAK 303 ++G++ DG + V A+ Sbjct: 67 MNGQELDGRNITVNEAQ 83
>PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (57 kDa RNA-binding protein PPTB-1) Length = 531 Score = 35.4 bits (80), Expect = 0.061 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Frame = +1 Query: 88 GNTRLYVGRL-PSRTRTRDLEDLFGRYGRVRHVDM---KHEFAFVEFSDPRDADEARYNL 255 GN+ L V L P R + L LFG YG V+ V + K E A V+ +D A A +L Sbjct: 335 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHL 394 Query: 256 DGRDFDGSRMIVEFAK 303 +G G + + +K Sbjct: 395 NGHKLHGKPIRITLSK 410
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 35.4 bits (80), Expect = 0.061 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 255 L++ R+ T L F YG ++ + + H+ +AF+E+ RD A + Sbjct: 104 LFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHA 163 Query: 256 DGRDFDGSRMIVE 294 DG+ D R++V+ Sbjct: 164 DGKKIDSKRVLVD 176
>RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B"| Length = 225 Score = 35.4 bits (80), Expect = 0.061 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = +1 Query: 82 YGGNTRLYVGRLPSRTRTRDLEDLFGRYG---RVRHVDMKHEFAFVEFSDPRDADEARYN 252 Y N L++ LP T L LF ++ VR V +H+ AFVEF + A AR Sbjct: 147 YPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDA 206 Query: 253 LDGRDFDGSR-MIVEFAK 303 L G S M + +AK Sbjct: 207 LQGFKITPSHAMKITYAK 224
>RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B"| Length = 225 Score = 35.4 bits (80), Expect = 0.061 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = +1 Query: 82 YGGNTRLYVGRLPSRTRTRDLEDLFGRYG---RVRHVDMKHEFAFVEFSDPRDADEARYN 252 Y N L++ LP T L LF ++ VR V +H+ AFVEF + A AR Sbjct: 147 YPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDA 206 Query: 253 LDGRDFDGSR-MIVEFAK 303 L G S M + +AK Sbjct: 207 LQGFKITPSHAMKITYAK 224
>PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein| Length = 121 Score = 35.0 bits (79), Expect = 0.079 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNL 255 N LYV LP + + ++ D+FG++G +R + + + AFV + D DA A +L Sbjct: 14 NRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 73 Query: 256 DG 261 G Sbjct: 74 SG 75
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 35.0 bits (79), Expect = 0.079 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARY 249 T L V LP + LFG G + + + + FV + DP+DA++A Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105 Query: 250 NLDGRDFDGSRMIVEFAK 303 L+G + V +A+ Sbjct: 106 TLNGLRLQTKTIKVSYAR 123 Score = 34.7 bits (78), Expect = 0.10 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 246 + LYV LP ++LE LF +YGR+ + + F+ F +A+EA Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190 Query: 247 YNLDGRDFDGSR--MIVEFA 300 L+G+ G+ + V+FA Sbjct: 191 KGLNGQKPSGATEPITVKFA 210
>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)| Length = 531 Score = 35.0 bits (79), Expect = 0.079 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Frame = +1 Query: 88 GNTRLYVGRL-PSRTRTRDLEDLFGRYGRVRHVDM---KHEFAFVEFSDPRDADEARYNL 255 GN+ L V L P R + L LFG YG V+ V + K E A V+ +D A A +L Sbjct: 335 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHL 394 Query: 256 DGRDFDGSRMIVEFAK 303 +G G + + +K Sbjct: 395 NGHKLHGKPVRITLSK 410
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 35.0 bits (79), Expect = 0.079 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 8/56 (14%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADE 240 +L+VG L T ++L D FG+YG + +++K + FAF+ F++ D+ Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDK 112
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 35.0 bits (79), Expect = 0.079 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 255 L+V RL + ++ F YG ++ V + + +AF+E+ RD A Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199 Query: 256 DGRDFDGSRMIVE 294 DG+ DG R++V+ Sbjct: 200 DGQKIDGRRVLVD 212
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 35.0 bits (79), Expect = 0.079 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARY 249 T L V LP + LFG G + + + + FV + DP+DA++A Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110 Query: 250 NLDGRDFDGSRMIVEFAK 303 L+G + V +A+ Sbjct: 111 TLNGLRLQTKTIKVSYAR 128 Score = 34.7 bits (78), Expect = 0.10 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 246 + LYV LP ++LE LF +YGR+ + + F+ F +A+EA Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195 Query: 247 YNLDGRDFDGSR--MIVEFA 300 L+G+ G+ + V+FA Sbjct: 196 KGLNGQKPSGATEPITVKFA 215
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 35.0 bits (79), Expect = 0.079 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARY 249 T L V LP + LFG G + + + + FV + DP+DA++A Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 250 NLDGRDFDGSRMIVEFAK 303 L+G + V +A+ Sbjct: 99 TLNGLRLQTKTIKVSYAR 116 Score = 34.7 bits (78), Expect = 0.10 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 246 + LYV LP ++LE LF +YGR+ + + F+ F +A+EA Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183 Query: 247 YNLDGRDFDGSR--MIVEFA 300 L+G+ G+ + V+FA Sbjct: 184 KGLNGQKPSGATEPITVKFA 203
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 34.7 bits (78), Expect = 0.10 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 255 L+VGRLP R+ LE+LF + G V+ + E F +V FS D A + Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 256 DGRDFDGSRMIVEFAK 303 F+G ++ V AK Sbjct: 65 --TTFEGCKIDVTVAK 78 Score = 30.8 bits (68), Expect = 1.5 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 7/88 (7%) Frame = +1 Query: 58 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEF 216 P++ + RL + L + DL+ +F YG V V++ + FAFV+F Sbjct: 101 PKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQF 160 Query: 217 SDPRDADEARYNLDGRDFDGSRMIVEFA 300 + +A +A + ++ G + V++A Sbjct: 161 KNLLEAGKALKGANMKEIKGRTVAVDWA 188
>PM14_MOUSE (P59708) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)| Length = 125 Score = 34.7 bits (78), Expect = 0.10 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNL 255 N LY+ LP + ++ D+FG+YG +R + + + A+V + D DA A +L Sbjct: 18 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHL 77 Query: 256 DG 261 G Sbjct: 78 SG 79
>PM14_HUMAN (Q9Y3B4) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)| Length = 125 Score = 34.7 bits (78), Expect = 0.10 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNL 255 N LY+ LP + ++ D+FG+YG +R + + + A+V + D DA A +L Sbjct: 18 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHL 77 Query: 256 DG 261 G Sbjct: 78 SG 79
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 34.7 bits (78), Expect = 0.10 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Frame = +1 Query: 34 PPLRSHRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMK--HEFAF 207 P S+R P D NT ++VG L S +DL+ F +GR+ ++ + F Sbjct: 277 PTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGF 336 Query: 208 VEFSDPRDADEARYNLDG 261 V++S+ A++A + G Sbjct: 337 VQYSEKSAAEKAINTMQG 354
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 34.7 bits (78), Expect = 0.10 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 8/87 (9%) Frame = +1 Query: 67 DERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSD 222 D + T L LP +L+ LFG G + + + + FV + D Sbjct: 30 DSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89 Query: 223 PRDADEARYNLDGRDFDGSRMIVEFAK 303 P+DA++A L+G + V +A+ Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSYAR 116 Score = 34.3 bits (77), Expect = 0.13 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 246 + LYV LP ++LE LF +YGR+ + + F+ F +A+EA Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 247 YNLDGRDFDGSR--MIVEFA 300 L+G+ G+ + V+FA Sbjct: 184 KGLNGQKPPGATEPITVKFA 203
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 34.7 bits (78), Expect = 0.10 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 16/92 (17%) Frame = +1 Query: 76 DRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVR----------HVDMKHEF------AF 207 D N+ +YV L DL D F + G V+ H+ + E A Sbjct: 354 DEDSDNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 413 Query: 208 VEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 303 V + DP A A DG+DF GS++ V A+ Sbjct: 414 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 445
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 34.7 bits (78), Expect = 0.10 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 16/105 (15%) Frame = +1 Query: 34 PPLRSHRMPR--------YDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM 189 PP HR R + R+ + + V L + T + +LF +YG + + M Sbjct: 69 PPEPRHRSGRSSRDRERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQM 128 Query: 190 --------KHEFAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFA 300 F F+ F DA A+ + G + DG R+ V+F+ Sbjct: 129 VIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFS 173
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 34.3 bits (77), Expect = 0.13 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Frame = +1 Query: 82 YGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHV--DMKHEFAFVEFSDPRDADEARYNL 255 Y RL+VG LP+ + + LF +YG V + F F++ A+ A+ L Sbjct: 285 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 344 Query: 256 DGRDFDGSRMIVEFA 300 D G ++ V FA Sbjct: 345 DDTPMRGRQLRVRFA 359
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma| breakpoint region 1 protein) Length = 656 Score = 34.3 bits (77), Expect = 0.13 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 16/92 (17%) Frame = +1 Query: 76 DRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVR----------HVDMKHEF------AF 207 D N+ +YV L DL D F + G V+ H+ + E A Sbjct: 355 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 414 Query: 208 VEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 303 V + DP A A DG+DF GS++ V A+ Sbjct: 415 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 446
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 34.3 bits (77), Expect = 0.13 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 252 RL++ L + D LF +YG + V + FA V+F DP +A A Sbjct: 302 RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEA 361 Query: 253 LDGRDFDG 276 DG+ F G Sbjct: 362 QDGKIFQG 369 Score = 30.0 bits (66), Expect = 2.5 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 13/78 (16%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGR--VRHVDMKHE-----------FAFVEFSDPRD 231 +T ++V L +T +R L D F V V MK + F FVEFS Sbjct: 604 STSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEA 663 Query: 232 ADEARYNLDGRDFDGSRM 285 A+ A+ +DG DG ++ Sbjct: 664 AEIAQKAMDGHVLDGHKL 681
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 34.3 bits (77), Expect = 0.13 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Frame = +1 Query: 82 YGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHV--DMKHEFAFVEFSDPRDADEARYNL 255 Y RL+VG LP+ + + LF +YG V + F F++ A+ A+ L Sbjct: 293 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 352 Query: 256 DGRDFDGSRMIVEFA 300 D G ++ V FA Sbjct: 353 DDTPMRGRQLRVRFA 367
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 33.9 bits (76), Expect = 0.18 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 252 R +VG L T DL+ F ++G V R F FV F D + +A Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 253 LDGRDFDGSRMIVEFAK 303 ++G++ DG + V A+ Sbjct: 67 MNGKELDGRVITVNEAQ 83
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 33.9 bits (76), Expect = 0.18 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHV----DMKHE---FAFVEFSDPRDADEARY 249 N+ LYVG L L DLF + V ++ D+ H +A+V F++P DA A Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME 103 Query: 250 NLD 258 +L+ Sbjct: 104 SLN 106 Score = 30.8 bits (68), Expect = 1.5 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 7/63 (11%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRH-VDMKHE------FAFVEFSDPRDADEARYN 252 T +YV LP +L+ FG+YG + V MK + F FV F P A A Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 284 Query: 253 LDG 261 ++G Sbjct: 285 MNG 287 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 7/77 (9%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRV-------RHVDMKHEFAFVEFSDPRDADEARYN 252 + LY+ L L+++F YG V + F FV +S+P +A A Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKE 387 Query: 253 LDGRDFDGSRMIVEFAK 303 ++G+ + V A+ Sbjct: 388 MNGKMIGRKPLYVALAQ 404
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 33.9 bits (76), Expect = 0.18 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 11/75 (14%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADE---A 243 ++++G L T +L + FG+YG V + + + F F+ F P DE Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219 Query: 244 RYNLDGRDFDGSRMI 288 ++ LDG+ D R I Sbjct: 220 QHILDGKVIDPKRAI 234
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 33.9 bits (76), Expect = 0.18 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 8/82 (9%) Frame = +1 Query: 82 YGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDAD 237 + + R+YVG L LE LF G+V + ++ F FV +S + + Sbjct: 190 FDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVN 249 Query: 238 EARYNLDGRDFDGSRMIVEFAK 303 A +LDG D +G + V A+ Sbjct: 250 NAIESLDGVDLNGRAIRVSPAE 271 Score = 32.0 bits (71), Expect = 0.67 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 8/83 (9%) Frame = +1 Query: 67 DERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSD 222 +E + + +++VG L + L +LF R G V V++ ++ F FV S Sbjct: 78 EEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSS 137 Query: 223 PRDADEARYNLDGRDFDGSRMIV 291 + + A +G + DG + V Sbjct: 138 KEEVEAACQQFNGYELDGRALRV 160
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 33.9 bits (76), Expect = 0.18 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 6/101 (5%) Frame = +1 Query: 19 PRLGFPPLRSHRMPRYDERDRYGGNTR--LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMK 192 P G+ + P E D Y + L++G L +L F +G + +D+K Sbjct: 629 PYQGYDVEDNEFRPYEAELDEYHPKSTRTLFIGNLEKDITAGELRSHFEAFGEIIEIDIK 688 Query: 193 HE----FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 303 + +AF ++SD +A +DG +R+ + F K Sbjct: 689 KQGLNAYAFCQYSDIVSVVKAMRKMDGEHLGSNRIKLGFGK 729
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 33.5 bits (75), Expect = 0.23 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 8/59 (13%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEA 243 +T LYV LP +LE +FG+YG + ++ + AFV F+ +A EA Sbjct: 187 DTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEA 245 Score = 28.1 bits (61), Expect = 9.7 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFSDPRDADEARY 249 T L V LP R+L LF G + + ++ AFV+F+ DA A Sbjct: 102 TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIK 161 Query: 250 NLDGRDFDGSRMIVEFAK 303 ++G R+ V +A+ Sbjct: 162 TVNGITVRNKRLKVSYAR 179
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 33.5 bits (75), Expect = 0.23 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 8/59 (13%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEA 243 +T LYV LP +LE +FG+YG + ++ + AFV F+ +A EA Sbjct: 170 DTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEA 228 Score = 30.4 bits (67), Expect = 1.9 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Frame = +1 Query: 76 DRYGGN-TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFSDPR 228 D G N T L V LP R+L LF G + + ++ AFV+F+ Sbjct: 78 DNQGCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEI 137 Query: 229 DADEARYNLDGRDFDGSRMIVEFAK 303 DA A +L+G R+ V +A+ Sbjct: 138 DAQNAIKSLNGVTVRNKRLKVSYAR 162
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 33.5 bits (75), Expect = 0.23 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 8/59 (13%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 243 +T LYV L LE +FG+YG++ +H AF+ F+ +A EA Sbjct: 163 DTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEA 221 Score = 32.0 bits (71), Expect = 0.67 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFSDPRDADEARY 249 T L V LP + R+L LF G + + ++ FV+F DA A Sbjct: 78 TNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAIN 137 Query: 250 NLDGRDFDGSRMIVEFAK 303 NL+G R+ V FA+ Sbjct: 138 NLNGITVRNKRIKVSFAR 155
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 33.1 bits (74), Expect = 0.30 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLF-----GRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGR 264 L+V L T L++ F R R F FV+FS DA A+ ++ Sbjct: 504 LFVRGLSEDTTEETLKEAFDGSVNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDG 563 Query: 265 DFDGSRMIVEFAK 303 + DG+++ ++FAK Sbjct: 564 EIDGNKVTLDFAK 576 Score = 32.0 bits (71), Expect = 0.67 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE----FAFVEFSDPRDADEARYNLDGRD 267 L+V +P T +L+++F +R K A+VEFS+ +A++A G + Sbjct: 326 LFVKNIPYSTTVEELQEIFENAKDIRIPTGKDGSNKGIAYVEFSNEDEANKALEEKQGAE 385 Query: 268 FDGSRMIVEF 297 +G + V+F Sbjct: 386 IEGRSIFVDF 395 Score = 29.6 bits (65), Expect = 3.3 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Frame = +1 Query: 88 GNTRLYVGRLPSRTRTRD-LEDLFGRYGRVR---HVDMKHEFAFVEFSDPRDADEARYNL 255 G++++ V S + T D L ++F + +R + FAF+EFS DA +A + Sbjct: 411 GDSKVLVVNNLSYSATEDSLREVFEKATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSC 470 Query: 256 DGRDFDGSRMIVEFAK 303 + + +G + +EF++ Sbjct: 471 NNTEIEGRSIRLEFSQ 486
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 33.1 bits (74), Expect = 0.30 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 5/87 (5%) Frame = +1 Query: 58 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSD 222 PR R + L+V L T L++ F R R V + F FV+F+ Sbjct: 560 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNS 619 Query: 223 PRDADEARYNLDGRDFDGSRMIVEFAK 303 DA A+ ++ + DG+++ +++AK Sbjct: 620 EEDAKAAKEAMEDGEIDGNKVTLDWAK 646
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 33.1 bits (74), Expect = 0.30 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 12/71 (16%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDA----DE 240 +++VG L T +DL+D F ++G V +K + F F+ F D D+ Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135 Query: 241 ARYNLDGRDFD 273 + LDGR D Sbjct: 136 KEHRLDGRVID 146
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 33.1 bits (74), Expect = 0.30 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 5/87 (5%) Frame = +1 Query: 58 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSD 222 PR R + L+V L T L++ F R R V + F FV+F+ Sbjct: 559 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNS 618 Query: 223 PRDADEARYNLDGRDFDGSRMIVEFAK 303 DA A+ ++ + DG+++ +++AK Sbjct: 619 EEDAKAAKEAMEDGEIDGNKVTLDWAK 645
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 33.1 bits (74), Expect = 0.30 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 5/87 (5%) Frame = +1 Query: 58 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSD 222 PR R + L+V L T L++ F R R V + F FV+F+ Sbjct: 561 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNS 620 Query: 223 PRDADEARYNLDGRDFDGSRMIVEFAK 303 DA A+ ++ + DG+++ +++AK Sbjct: 621 EEDAKAAKEAMEDGEIDGNKVTLDWAK 647
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 33.1 bits (74), Expect = 0.30 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 12/71 (16%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDA----DE 240 +++VG L T +DL+D F ++G V +K + F F+ F D D+ Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 128 Query: 241 ARYNLDGRDFD 273 + LDGR D Sbjct: 129 KEHRLDGRVID 139
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 33.1 bits (74), Expect = 0.30 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 12/71 (16%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDAD----E 240 ++++G L +T L D F ++G +R + + F FV F+DP D + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 241 ARYNLDGRDFD 273 + LD + D Sbjct: 82 PHHELDSKTID 92
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 33.1 bits (74), Expect = 0.30 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 12/71 (16%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDAD----E 240 ++++G L +T L D F ++G +R + + F FV F+DP D + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 241 ARYNLDGRDFD 273 + LD + D Sbjct: 82 PHHELDSKTID 92
>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 563 Score = 32.7 bits (73), Expect = 0.39 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVD--MKHEFAFVEFSDPRDADEARYNLDGRD 267 TRL+VG L T L F R+G +R +D FA++++ A A + G Sbjct: 91 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFP 150 Query: 268 FDG--SRMIVEFAK 303 G R+ V+FAK Sbjct: 151 LGGPDRRLRVDFAK 164 Score = 28.1 bits (61), Expect = 9.7 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Frame = +1 Query: 55 MPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKH-------EFAFVE 213 MP D+R L++G L +L F +YG + V +K +AF++ Sbjct: 1 MPEDDQR----ATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLK 56 Query: 214 FSDPRDADEARYNLDGR 264 F + A A+ + GR Sbjct: 57 FQNLDMAHRAKVAMSGR 73
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 32.7 bits (73), Expect = 0.39 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 8/56 (14%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADE 240 +L+VG + DL D F +YG V + K FAFVEF D D+ Sbjct: 109 KLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDK 164
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 32.7 bits (73), Expect = 0.39 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 5/87 (5%) Frame = +1 Query: 58 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSD 222 PR R + L+V L T L++ F R R V + F FV+F+ Sbjct: 559 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNS 618 Query: 223 PRDADEARYNLDGRDFDGSRMIVEFAK 303 DA A+ ++ + DG+++ +++AK Sbjct: 619 EEDAKAAKEAMEDGEIDGNKVTLDWAK 645
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 32.7 bits (73), Expect = 0.39 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Frame = +1 Query: 100 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 255 +YVG L DL +F YG V+ V + + F FVE + A L Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 256 DGRDFDGSRMIVEFAK 303 DG ++ G + V AK Sbjct: 63 DGAEWMGRDLKVNKAK 78
>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 564 Score = 32.7 bits (73), Expect = 0.39 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVD--MKHEFAFVEFSDPRDADEARYNLDGRD 267 TRL+VG L T L F R+G +R +D FA++++ A A + G Sbjct: 91 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFP 150 Query: 268 FDG--SRMIVEFAK 303 G R+ V+FAK Sbjct: 151 LGGPDRRLRVDFAK 164 Score = 28.1 bits (61), Expect = 9.7 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Frame = +1 Query: 55 MPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKH-------EFAFVE 213 MP D+R L++G L +L F +YG + V +K +AF++ Sbjct: 1 MPEDDQR----ATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLK 56 Query: 214 FSDPRDADEARYNLDGR 264 F + A A+ + GR Sbjct: 57 FQNLDMAHRAKVAMSGR 73
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 32.7 bits (73), Expect = 0.39 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 7/73 (9%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYN 252 T LYV + S T ++LF ++G + ++ + F FV + DA +A Sbjct: 218 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 277 Query: 253 LDGRDFDGSRMIV 291 L+ + +G ++ V Sbjct: 278 LNDSELNGEKLYV 290
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 32.7 bits (73), Expect = 0.39 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 8/84 (9%) Frame = +1 Query: 76 DRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFSDPRD 231 D+ NT L V LP R+L LF G + + ++ AFV+F+ D Sbjct: 121 DQRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMD 180 Query: 232 ADEARYNLDGRDFDGSRMIVEFAK 303 + A L+G R+ V +A+ Sbjct: 181 SQRAIKVLNGITVRNKRLKVSYAR 204 Score = 30.0 bits (66), Expect = 2.5 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEA 243 +T LYV LP L+ +FG+YG + ++ + AFV ++ +A EA Sbjct: 212 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 270
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 32.7 bits (73), Expect = 0.39 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 5/87 (5%) Frame = +1 Query: 58 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSD 222 PR R + L+V L T L++ F R R V + F FV+F+ Sbjct: 562 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNS 621 Query: 223 PRDADEARYNLDGRDFDGSRMIVEFAK 303 DA A+ ++ + DG+++ +++AK Sbjct: 622 EEDAKAAKEAMEDGEIDGNKVTLDWAK 648
>SNRPA_DROME (P43332) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1-A) (Sex determination protein snf) Length = 216 Score = 32.7 bits (73), Expect = 0.39 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYG---RVRHVDMKHEFAFVEFSDPRDADEARYNLDG 261 N L++ LP T L LF ++ VR V +H+ AFVEF+ ++ A+ L G Sbjct: 141 NQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQG 200 Query: 262 RDFDGSR-MIVEFAK 303 + M + FAK Sbjct: 201 FKITPTHAMKITFAK 215
>YBKC_SCHPO (O94621) Hypothetical RNA-binding protein C1289.12 in chromosome II| Length = 352 Score = 32.7 bits (73), Expect = 0.39 Identities = 16/71 (22%), Positives = 35/71 (49%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF 270 NT +YV +LP T++L F +G + + + + + F+ A++A ++ Sbjct: 175 NTAVYVHQLPENITTQELRSYFLHFGEILYTQVNNNSGRIVFAQRYFAEQAINEMNNFPL 234 Query: 271 DGSRMIVEFAK 303 G R+ + +A+ Sbjct: 235 HGVRIQLSWAR 245
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 32.7 bits (73), Expect = 0.39 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 11/88 (12%) Frame = +1 Query: 73 RDRYGGN---TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFS 219 RD +GG T L V LP R+L LF G + + ++ AFV+F+ Sbjct: 100 RDGHGGGSNGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFA 159 Query: 220 DPRDADEARYNLDGRDFDGSRMIVEFAK 303 D+ A +L+G R+ V +A+ Sbjct: 160 AETDSQRAIKSLNGITVRNKRLKVSYAR 187 Score = 31.2 bits (69), Expect = 1.1 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Frame = +1 Query: 91 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEA 243 +T LYV LP L+ +FG+YG + ++ + AFV F+ +A EA Sbjct: 195 DTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEA 253
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 32.3 bits (72), Expect = 0.51 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 16/91 (17%) Frame = +1 Query: 76 DRYGG---NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------------FAF 207 D GG +T++ V LP +D+ +LF YG+++ + + + FAF Sbjct: 631 DAEGGKTKSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAF 690 Query: 208 VEFSDPRDADEARYNLDGRDFDGSRMIVEFA 300 +EF+ +A A L G +++++A Sbjct: 691 LEFTTHTEAARAMEALKHTHLLGRHLVLQWA 721
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 32.3 bits (72), Expect = 0.51 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 8/56 (14%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM--------KHEFAFVEFSDPRDADE 240 +++VG + T L D F +YG++ +++ K FAFV F D D+ Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDK 160
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 32.3 bits (72), Expect = 0.51 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Frame = +1 Query: 94 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYN 252 T +Y+ L++ FG+YG V + + F FV F DA +A + Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDD 250 Query: 253 LDGRDFDGSRMIV 291 ++G+D +G + V Sbjct: 251 MNGKDLNGKAIFV 263 Score = 28.1 bits (61), Expect = 9.7 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Frame = +1 Query: 43 RSHRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE------FA 204 R + D RY G LYV L L F +G + + E F Sbjct: 278 RKFEQMKQDRITRYQG-VNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFG 336 Query: 205 FVEFSDPRDADEARYNLDGR 264 FV FS P +A +A ++GR Sbjct: 337 FVCFSSPEEATKAVTEMNGR 356
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 32.3 bits (72), Expect = 0.51 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 8/76 (10%) Frame = +1 Query: 88 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEA 243 G RLYVG L L +F +GR+ + + + + F+ FSD A +A Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307 Query: 244 RYNLDGRDFDGSRMIV 291 L+G + G M V Sbjct: 308 LEQLNGFELAGRPMKV 323 Score = 31.2 bits (69), Expect = 1.1 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 12/74 (16%) Frame = +1 Query: 37 PLRSHRMPRYDERDRYGGNTR----LYVGRLPSRTRTRDLEDLFGRYGRVRHVDM----- 189 P R + P + D R ++ +L +R R RDLE+ F G+VR V M Sbjct: 130 PFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRN 189 Query: 190 ---KHEFAFVEFSD 222 A+VEF D Sbjct: 190 SRRSRGIAYVEFVD 203
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 32.3 bits (72), Expect = 0.51 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 8/76 (10%) Frame = +1 Query: 88 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEA 243 G RLYVG L L +F +GR+ + + + + F+ FSD A +A Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307 Query: 244 RYNLDGRDFDGSRMIV 291 L+G + G M V Sbjct: 308 LEQLNGFELAGRPMKV 323 Score = 31.2 bits (69), Expect = 1.1 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 12/74 (16%) Frame = +1 Query: 37 PLRSHRMPRYDERDRYGGNTR----LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-- 198 P R + P + D R ++ +L +R R RDLE+ F G+VR V M + Sbjct: 130 PFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRN 189 Query: 199 ------FAFVEFSD 222 A+VEF D Sbjct: 190 SRRSKGIAYVEFVD 203
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 32.3 bits (72), Expect = 0.51 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 5/92 (5%) Frame = +1 Query: 43 RSHRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAF 207 R+ R+ R + L+V L T L++ F R R V + F F Sbjct: 551 RTIRLELQGSNSRSQPSKTLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGF 610 Query: 208 VEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 303 V+F+ DA A+ ++ + DG+++ +++AK Sbjct: 611 VDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 642
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 32.0 bits (71), Expect = 0.67 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%) Frame = +1 Query: 79 RYGG--NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRD 231 RYG R++VG + +T DL F +YG V+ V + ++ + FV F D Sbjct: 26 RYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQED 85 Query: 232 ADE 240 A + Sbjct: 86 AQK 88
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 32.0 bits (71), Expect = 0.67 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%) Frame = +1 Query: 79 RYGG--NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRD 231 RYG R++VG + +T DL F +YG V+ V + ++ + FV F D Sbjct: 26 RYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQED 85 Query: 232 ADE 240 A + Sbjct: 86 AQK 88
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 8/56 (14%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM--------KHEFAFVEFSDPRDADE 240 +++VG + T +L D F +YG++ +++ K FAFV F D D+ Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDK 182
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 8/56 (14%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM--------KHEFAFVEFSDPRDADE 240 +++VG + T +L D F +YG++ +++ K FAFV F D D+ Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDK 182
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 7/75 (9%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYNL 255 ++++G LP+ +++L +G ++ + + +AF E+ DP D+A L Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351 Query: 256 DGRDFDGSRMIVEFA 300 +G +++V+ A Sbjct: 352 NGMQLGDKQLVVQLA 366
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 7/75 (9%) Frame = +1 Query: 97 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYNL 255 ++++G LP+ +++L +G ++ + + +AF E+ DP D+A L Sbjct: 283 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 342 Query: 256 DGRDFDGSRMIVEFA 300 +G +++V+ A Sbjct: 343 NGMQLGDKQLVVQLA 357
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 32.0 bits (71), Expect = 0.67 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Frame = +1 Query: 61 RYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEF 216 R +R+R NT V LP +L DLFG+ GRV + + + FAFV F Sbjct: 166 RQIDRNRSDENT-CRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTF 224 Query: 217 SDPRDADEA 243 DA A Sbjct: 225 ESRDDAARA 233 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,825,090 Number of Sequences: 219361 Number of extensions: 954570 Number of successful extensions: 3592 Number of sequences better than 10.0: 333 Number of HSP's better than 10.0 without gapping: 3233 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3482 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
