ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart61b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106043.1| Zea mays PCO133450 mRNA sequence 46 0.099
2gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 46 0.099
3ref|XM_465289.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.39
4ref|XM_506793.1| PREDICTED Oryza sativa (japonica cultivar-group... 44 0.39
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
6dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
7dbj|AK102973.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.39
8dbj|AK059937.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.39
9dbj|AK058709.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.39
10gb|AC122907.4| Mus musculus BAC clone RP23-49I4 from chromosome ... 42 1.6
11ref|XM_755664.1| Ustilago maydis 521 hypothetical protein (UM046... 42 1.6
12gb|AC084390.1| Mus musculus BAC clone RP23-285H9 from 1, complet... 42 1.6
13gb|AC110418.7| Homo sapiens 3 BAC RP11-711F20 (Roswell Park Canc... 42 1.6
14gb|AC105900.2| Homo sapiens chromosome 3 clone RP11-30P17, compl... 42 1.6
15gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosom... 42 1.6
16ref|XM_464065.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.1
17gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 40 6.1
18gb|AF297047.1| Zea mays homocysteine S-methyltransferase-4 mRNA,... 40 6.1
19gb|CP000147.1| Rhodobacter sphaeroides 2.4.1 plasmid D, complete... 40 6.1
20gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 6.1
21ref|XM_981753.1| PREDICTED: Mus musculus RIKEN cDNA 2700045P11 g... 40 6.1
22ref|XM_908737.2| PREDICTED: Mus musculus RIKEN cDNA 2700045P11 g... 40 6.1
23ref|XM_980231.1| PREDICTED: Mus musculus RIKEN cDNA 2700045P11 g... 40 6.1
24ref|XM_980313.1| PREDICTED: Mus musculus RIKEN cDNA 2700045P11 g... 40 6.1
25emb|AL360228.36| Human DNA sequence from clone RP11-439F21 on ch... 40 6.1
26gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 6.1
27dbj|AK049860.1| Mus musculus adult male hippocampus cDNA, RIKEN ... 40 6.1
28dbj|AK012380.1| Mus musculus 11 days embryo whole body cDNA, RIK... 40 6.1
29gb|AC154289.1| Mus musculus BAC clone RP23-449E11 from chromosom... 40 6.1
30gb|AE009508.1| Brucella melitensis 16M chromosome I, section 65 ... 40 6.1
31gb|AE004507.1| Pseudomonas aeruginosa PAO1, section 68 of 529 of... 40 6.1
32dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 6.1
33gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 40 6.1
34dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
35dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
36emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 6.1
37gb|AY109808.1| Zea mays CL1142_1 mRNA sequence 40 6.1
38gb|AF086469.1|HUMZD87A06 Homo sapiens full length insert cDNA cl... 40 6.1
39gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 6.1
40gb|U20824.1|EHVU20824 Equine herpesvirus 2, complete genome 40 6.1
41emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 40 6.1 
>gb|AY106043.1| Zea mays PCO133450 mRNA sequence
          Length = 642

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 401 gaggcgctcaccaagacgcggcggctcgtcgagtgcgccatgttcgc 447
           |||||||||  || |||||||  |||||| |||||||||||||||||
Sbjct: 269 gaggcgctccacaggacgcgggagctcgtggagtgcgccatgttcgc 315
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 319    gcttcaggccgccgtcagcggag 341
              |||||||||||||||||||||||
Sbjct: 156932 gcttcaggccgccgtcagcggag 156954
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>ref|XM_465289.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1190

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 428 gtcgagtgcgccatgttcgcatccgt 453
           ||||||||||| ||||||||||||||
Sbjct: 496 gtcgagtgcgcgatgttcgcatccgt 521
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>ref|XM_506793.1| PREDICTED Oryza sativa (japonica cultivar-group), P0476C12.24 mRNA
          Length = 1340

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 428 gtcgagtgcgccatgttcgcatccgt 453
           ||||||||||| ||||||||||||||
Sbjct: 470 gtcgagtgcgcgatgttcgcatccgt 495
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 428      gtcgagtgcgccatgttcgcatccgt 453
                ||||||||||| ||||||||||||||
Sbjct: 13125607 gtcgagtgcgcgatgttcgcatccgt 13125582



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 367     cgcggatgaggacgaggaag 386
               ||||||||||||||||||||
Sbjct: 2001985 cgcggatgaggacgaggaag 2001966
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>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0476C12
          Length = 157570

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 428    gtcgagtgcgccatgttcgcatccgt 453
              ||||||||||| ||||||||||||||
Sbjct: 102184 gtcgagtgcgcgatgttcgcatccgt 102159
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>dbj|AK102973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115K18, full
           insert sequence
          Length = 1340

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 428 gtcgagtgcgccatgttcgcatccgt 453
           ||||||||||| ||||||||||||||
Sbjct: 470 gtcgagtgcgcgatgttcgcatccgt 495
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>dbj|AK059937.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-D11, full
           insert sequence
          Length = 1190

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 428 gtcgagtgcgccatgttcgcatccgt 453
           ||||||||||| ||||||||||||||
Sbjct: 496 gtcgagtgcgcgatgttcgcatccgt 521
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>dbj|AK058709.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D04, full
           insert sequence
          Length = 1105

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 428 gtcgagtgcgccatgttcgcatccgt 453
           ||||||||||| ||||||||||||||
Sbjct: 579 gtcgagtgcgcgatgttcgcatccgt 554
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>gb|AC122907.4| Mus musculus BAC clone RP23-49I4 from chromosome 15, complete sequence
          Length = 233904

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 49     cccaaccttcccgggctccgctccgccca 77
              |||| |||||||||||| |||||||||||
Sbjct: 212464 cccacccttcccgggctgcgctccgccca 212436
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>ref|XM_755664.1| Ustilago maydis 521 hypothetical protein (UM04610.1) partial mRNA
          Length = 2112

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 418  gcggcggctcgtcgagtgcgc 438
            |||||||||||||||||||||
Sbjct: 2057 gcggcggctcgtcgagtgcgc 2037
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>gb|AC084390.1| Mus musculus BAC clone RP23-285H9 from 1, complete sequence
          Length = 177050

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    cccagcctccagtcctccccg 39
             |||||||||||||||||||||
Sbjct: 70499 cccagcctccagtcctccccg 70519
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>gb|AC110418.7| Homo sapiens 3 BAC RP11-711F20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 148914

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 104   aagaaagcacagataaattcc 124
             |||||||||||||||||||||
Sbjct: 92087 aagaaagcacagataaattcc 92067
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>gb|AC105900.2| Homo sapiens chromosome 3 clone RP11-30P17, complete sequence
          Length = 148377

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 104  aagaaagcacagataaattcc 124
            |||||||||||||||||||||
Sbjct: 8342 aagaaagcacagataaattcc 8362
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>gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosome 15, complete
             sequence
          Length = 198559

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 49    cccaaccttcccgggctccgctccgccca 77
             |||| |||||||||||| |||||||||||
Sbjct: 76734 cccacccttcccgggctgcgctccgccca 76762
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>ref|XM_464065.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1797

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 367 cgcggatgaggacgaggaag 386
           ||||||||||||||||||||
Sbjct: 48  cgcggatgaggacgaggaag 29
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>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 369     cggatgaggacgaggaaggcgcgg 392
               |||||||||||||||||| |||||
Sbjct: 1294529 cggatgaggacgaggaagtcgcgg 1294506
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>gb|AF297047.1| Zea mays homocysteine S-methyltransferase-4 mRNA, complete cds
          Length = 1172

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 386 ggcgcggacctgcacgaggcgctc 409
           ||||||||||||||||| ||||||
Sbjct: 123 ggcgcggacctgcacgacgcgctc 146
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>gb|CP000147.1| Rhodobacter sphaeroides 2.4.1 plasmid D, complete sequence
          Length = 100828

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 408   tcaccaagacgcggcggctc 427
             ||||||||||||||||||||
Sbjct: 11057 tcaccaagacgcggcggctc 11038
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 388    cgcggacctgcacgaggcgctcaccaag 415
              |||||||  |||||||||||||||||||
Sbjct: 295698 cgcggacgcgcacgaggcgctcaccaag 295671
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>ref|XM_981753.1| PREDICTED: Mus musculus RIKEN cDNA 2700045P11 gene (2700045P11Rik),
           mRNA
          Length = 3955

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 337 cggagccgcctccggagagg 356
           ||||||||||||||||||||
Sbjct: 675 cggagccgcctccggagagg 694
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>ref|XM_908737.2| PREDICTED: Mus musculus RIKEN cDNA 2700045P11 gene (2700045P11Rik),
           mRNA
          Length = 3706

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 337 cggagccgcctccggagagg 356
           ||||||||||||||||||||
Sbjct: 426 cggagccgcctccggagagg 445
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>ref|XM_980231.1| PREDICTED: Mus musculus RIKEN cDNA 2700045P11 gene, transcript
           variant 1 (2700045P11Rik), mRNA
          Length = 1088

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 337 cggagccgcctccggagagg 356
           ||||||||||||||||||||
Sbjct: 574 cggagccgcctccggagagg 593
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>ref|XM_980313.1| PREDICTED: Mus musculus RIKEN cDNA 2700045P11 gene, transcript
           variant 2 (2700045P11Rik), mRNA
          Length = 3854

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 337 cggagccgcctccggagagg 356
           ||||||||||||||||||||
Sbjct: 574 cggagccgcctccggagagg 593
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>emb|AL360228.36| Human DNA sequence from clone RP11-439F21 on chromosome 6 Contains part
             of the gene for a novel protein (contains KIAA0680) and a
             CpG island, complete sequence
          Length = 36242

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   atttccttccttacattcta 145
             ||||||||||||||||||||
Sbjct: 26187 atttccttccttacattcta 26168
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete
              genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 370    ggatgaggacgaggaaggcg 389
              ||||||||||||||||||||
Sbjct: 793735 ggatgaggacgaggaaggcg 793716
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>dbj|AK049860.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length
           enriched library, clone:C630004G15 product:hypothetical
           protein, full insert sequence
          Length = 3415

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 337 cggagccgcctccggagagg 356
           ||||||||||||||||||||
Sbjct: 135 cggagccgcctccggagagg 154
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>dbj|AK012380.1| Mus musculus 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2700045P11 product:hypothetical
           protein, full insert sequence
          Length = 1197

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 337 cggagccgcctccggagagg 356
           ||||||||||||||||||||
Sbjct: 610 cggagccgcctccggagagg 629
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>gb|AC154289.1| Mus musculus BAC clone RP23-449E11 from chromosome 16, complete sequence
          Length = 191617

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    cggagccgcctccggagagg 356
              ||||||||||||||||||||
Sbjct: 155819 cggagccgcctccggagagg 155800
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>gb|AE009508.1| Brucella melitensis 16M chromosome I, section 65 of 195 of the
            complete sequence
          Length = 10586

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 369  cggatgaggacgaggaaggcgcgg 392
            |||||||||||||||||| |||||
Sbjct: 8587 cggatgaggacgaggaagtcgcgg 8610
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>gb|AE004507.1| Pseudomonas aeruginosa PAO1, section 68 of 529 of the complete genome
          Length = 10443

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 191  ctccatccttgcccacgcct 210
            ||||||||||||||||||||
Sbjct: 9969 ctccatccttgcccacgcct 9988
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    cggagccgcctccggagagg 356
              ||||||||||||||||||||
Sbjct: 522325 cggagccgcctccggagagg 522344
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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 369     cggatgaggacgaggaaggcgcgg 392
               |||||||||||||||||| |||||
Sbjct: 1312496 cggatgaggacgaggaagtcgcgg 1312473
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>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0026E05
          Length = 159860

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   cgcggatgaggacgaggaag 386
             ||||||||||||||||||||
Sbjct: 52193 cgcggatgaggacgaggaag 52174
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>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0081C13
          Length = 144624

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    cgcggatgaggacgaggaag 386
              ||||||||||||||||||||
Sbjct: 141546 cgcggatgaggacgaggaag 141527
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 400     cgaggcgctcaccaagacgc 419
               ||||||||||||||||||||
Sbjct: 3030033 cgaggcgctcaccaagacgc 3030014
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>gb|AY109808.1| Zea mays CL1142_1 mRNA sequence
          Length = 1124

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 386 ggcgcggacctgcacgaggcgctc 409
           ||||||||||||||||| ||||||
Sbjct: 132 ggcgcggacctgcacgacgcgctc 155
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>gb|AF086469.1|HUMZD87A06 Homo sapiens full length insert cDNA clone ZD87A06
          Length = 294

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 286 cgccgtcaccgcgctccgag 305
           ||||||||||||||||||||
Sbjct: 155 cgccgtcaccgcgctccgag 136
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    cggagccgcctccggagagg 356
              ||||||||||||||||||||
Sbjct: 172821 cggagccgcctccggagagg 172840
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>gb|U20824.1|EHVU20824 Equine herpesvirus 2, complete genome
          Length = 184427

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   cgcggatgaggacgaggaag 386
             ||||||||||||||||||||
Sbjct: 75473 cgcggatgaggacgaggaag 75454
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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain
               2308
          Length = 2121359

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 369     cggatgaggacgaggaaggcgcgg 392
               |||||||||||||||||| |||||
Sbjct: 1309646 cggatgaggacgaggaagtcgcgg 1309623


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,149,326
Number of Sequences: 3902068
Number of extensions: 3149326
Number of successful extensions: 63687
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63258
Number of HSP's gapped (non-prelim): 429
length of query: 455
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 433
effective length of database: 17,147,199,772
effective search space: 7424737501276
effective search space used: 7424737501276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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