ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart61b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 69 4e-12
2FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 61 1e-09
3APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 44 2e-04
4APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 41 0.001
5FA47B_HUMAN (Q8NA70) Protein FAM47B 31 1.4
6MOAC_BRAJA (P94328) Molybdenum cofactor biosynthesis protein C 31 1.4
7EHMT2_MOUSE (Q9Z148) Histone-lysine N-methyltransferase, H3 lysi... 29 4.0
8HBB_EULFU (P02053) Hemoglobin beta subunit (Hemoglobin beta chai... 29 5.3
9EDA_MOUSE (O54693) Ectodysplasin-A (EDA protein homolog) (Tabby ... 29 5.3
10PHF22_MOUSE (Q9D168) Integrator complex subunit 12 (PHD finger p... 29 5.3
11SYV_HALMA (Q5V1H0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 28 6.9
12HD_FUGRU (P51112) Huntingtin (Huntington disease protein homolog... 28 6.9
13PHF22_RAT (Q68FR3) Integrator complex subunit 12 (PHD finger pro... 28 9.0
14HPS4_MOUSE (Q99KG7) Hermansky-Pudlak syndrome 4 protein homolog ... 28 9.0

>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 40/79 (50%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
 Frame = +3

Query: 174 LLCALRHGGAQR---YEAIYSFGDSISDTGNLCVGGCPSWLTTGQSPYGETFFKRPTGRC 344
           LLC L    A     + AI++FGDS SDTG       P        PYGETFF R TGR 
Sbjct: 17  LLCMLSLAYASETCDFPAIFNFGDSNSDTGGKAAAFYPL-----NPPYGETFFHRSTGRY 71

Query: 345 SDGRVIVDFLAEHFGLPLL 401
           SDGR+I+DF+AE F LP L
Sbjct: 72  SDGRLIIDFIAESFNLPYL 90



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
 Frame = +3

Query: 192 HGGAQRYEAIYSFGDSISDTGNLCVGGCPSWLTTGQS--PYGETFFKRPTGRCSDGRVIV 365
           H     + AI++FGDS SDTG L           GQ+  P+G +FF  P GR  DGR+++
Sbjct: 22  HAHQCHFPAIFNFGDSNSDTGGLSAA-------FGQAGPPHGSSFFGSPAGRYCDGRLVI 74

Query: 366 DFLAEHFGLPLLPA 407
           DF+AE  GLP L A
Sbjct: 75  DFIAESLGLPYLSA 88



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
 Frame = +3

Query: 216 AIYSFGDSISDTGNLCVGGCPSWLTTGQSPYGETF-FKRPTGRCSDGRVIVDFLAEHFGL 392
           A++ FGDS+ DTGN       + + +   PYG  F F+  TGR S+G V  D+LA++ G+
Sbjct: 204 AVFFFGDSVFDTGNN--NNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMGV 261

Query: 393 -PLLPA 407
             ++PA
Sbjct: 262 KEIVPA 267



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
 Frame = +3

Query: 216 AIYSFGDSISDTGNLCVGGCPSWLTTGQSPYGETF-FKRPTGRCSDGRVIVDFLAEHFGL 392
           A++ FGDSI DTGN       + L     PYG  F     TGR S+GRV  D+++++ G+
Sbjct: 125 AVFFFGDSIFDTGN--NNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGV 182

Query: 393 -PLLPA 407
             ++PA
Sbjct: 183 KEIVPA 188



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>FA47B_HUMAN (Q8NA70) Protein FAM47B|
          Length = 645

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
 Frame = -1

Query: 385 KCSARKSTMTRPSE--------------QRPVGRLKKVSP*GDCPVVSHDGQPPTQRLPV 248
           +C AR+ T   P+E              + PV RL+   P    PV S   +PP  R+  
Sbjct: 165 RCEAREKTTEVPTESGKYPCGESCPRPPETPVSRLRPQLP--KTPVSSRRPEPPKTRVSS 222

Query: 247 SEMESPKL*MASYRCAPP-*RSAHSSTTVPSS 155
              E PK  ++S    PP  R++H     P +
Sbjct: 223 LRPEPPKTRVSSLHPEPPETRASHLRVDPPET 254



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>MOAC_BRAJA (P94328) Molybdenum cofactor biosynthesis protein C|
          Length = 172

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 376 ARKSTMTRPSEQRPVGRLKKVSP*GDCPVVSHDGQPPTQRLPVSE 242
           ARK + TRPS+ +    L  +   G+  +V    +P T+RL V+E
Sbjct: 2   ARKPSKTRPSKAKSGPALTHIGATGEARMVDVSDKPATERLAVAE 46



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>EHMT2_MOUSE (Q9Z148) Histone-lysine N-methyltransferase, H3 lysine-9 specific 3|
           (EC 2.1.1.43) (Histone H3-K9 methyltransferase 3)
           (H3-K9-HMTase 3) (Euchromatic histone-lysine
           N-methyltransferase 2) (HLA-B-associated transcript 8)
           (Protein G9a)
          Length = 1263

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 418 PAWTAGSSGSPKCSARKSTMTRPSEQRP 335
           PA TA   G PK    + TM++PS  +P
Sbjct: 222 PATTAAQEGQPKVHRARKTMSKPSNGQP 249



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>HBB_EULFU (P02053) Hemoglobin beta subunit (Hemoglobin beta chain)|
           (Beta-globin)
          Length = 146

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +3

Query: 351 GRVIVDFLAEHFGLPLLPAVQA 416
           G V+V  LAEHFG    PAVQA
Sbjct: 107 GNVLVVVLAEHFGNAFSPAVQA 128



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>EDA_MOUSE (O54693) Ectodysplasin-A (EDA protein homolog) (Tabby protein)|
           [Contains: Ectodysplasin-A, membrane form;
           Ectodysplasin-A, secreted form]
          Length = 391

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 17/60 (28%), Positives = 22/60 (36%)
 Frame = -1

Query: 409 TAGSSGSPKCSARKSTMTRPSEQRPVGRLKKVSP*GDCPVVSHDGQPPTQRLPVSEMESP 230
           T    G P       T++ P    PVG           P+  H GQP  Q+ P+   E P
Sbjct: 74  TESRLGGPGAPGTSGTLSSPGSLDPVG-----------PITRHLGQPSFQQQPLEPGEDP 122



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>PHF22_MOUSE (Q9D168) Integrator complex subunit 12 (PHD finger protein 22)|
          Length = 461

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -1

Query: 427 KSPPAWTAGSSGSPKCSARKSTMTRPSEQRPVGRLKKVSP*GDCPVVSHDGQPPTQRLPV 248
           K+  +  +GSS     +A K  + + +E+RP  ++K V+   D P      +P T+  P+
Sbjct: 72  KTSSSLPSGSSNGKVLTAEK--IKKEAEKRPADKMKDVTEGIDVPKKPRLEKPETRSSPI 129

Query: 247 SEMESPKL*MA 215
           +   S  L MA
Sbjct: 130 TVQTSKDLSMA 140



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>SYV_HALMA (Q5V1H0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 901

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 16/53 (30%), Positives = 18/53 (33%)
 Frame = -1

Query: 418 PAWTAGSSGSPKCSARKSTMTRPSEQRPVGRLKKVSP*GDCPVVSHDGQPPTQ 260
           P W     G P  + R        EQ PV  L    P   CP   HD   P +
Sbjct: 444 PVWYCDDCGEPVMAER--------EQLPVDPLSDAPPVDSCPECGHDSLTPEE 488



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>HD_FUGRU (P51112) Huntingtin (Huntington disease protein homolog) (HD protein)|
          Length = 3148

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 208  RCAPP*RSAHSSTTVPSSAALIVAM 134
            + +P  RSAHS   VP S ++IVAM
Sbjct: 2937 KASPAARSAHSDPQVPDSESIIVAM 2961



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>PHF22_RAT (Q68FR3) Integrator complex subunit 12 (PHD finger protein 22)|
          Length = 461

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = -1

Query: 427 KSPPAWTAGSSGSPKCSARKSTMTRPSEQRPVGRLKKVSP*GDCPVVSHDGQPPTQRLPV 248
           K+  +  +GSS     +A K  + + +E+RP  ++K  +   D P      +P T+  P+
Sbjct: 72  KTSSSLPSGSSNGKVLAAEK--LKKEAEKRPADKMKDATEGVDVPKKPRLEKPETRSSPI 129

Query: 247 SEMESPKL*MA 215
           +   S  L MA
Sbjct: 130 TVQTSKDLAMA 140



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>HPS4_MOUSE (Q99KG7) Hermansky-Pudlak syndrome 4 protein homolog (Light-ear|
           protein) (Le protein)
          Length = 671

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -1

Query: 343 QRPVGRLKKVSP*GDCPVVSHDGQPPTQRLPVSEMESPKL*MASYRCAPP*RSA 182
           Q PVG    V P G+    SH   P + R P S   SP      ++ +P  R A
Sbjct: 446 QHPVGVEPSVEPYGNGAQESHSALPRSSRSPDSPGPSPSADRTGFKPSPSGRHA 499


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,771,651
Number of Sequences: 219361
Number of extensions: 770651
Number of successful extensions: 2620
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2614
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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