ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart61a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.068
2gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.068
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.068
4gb|CP000081.1| Leishmania major chromosome 35, complete sequence 44 0.27
5gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 44 0.27
6ref|XM_838505.1| Leishmania major strain Friedlin hypothetical p... 44 0.27
7ref|XM_475286.1| Oryza sativa (japonica cultivar-group), predic... 42 1.1
8gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
9emb|AJ430531.1|CRE430531 Chlamydomonas reinhardtii partial mRNA ... 42 1.1
10emb|AJ431665.1|CRE431665 Chlamydomonas reinhardtii lrg6 gene for... 42 1.1
11emb|AL645589.24| Mouse DNA sequence from clone RP23-289H16 on ch... 42 1.1
12emb|AJ431664.1|CRE431664 Chlamydomonas reinhardtii mRNA for puta... 42 1.1
13gb|AC157944.2| Mus musculus BAC clone RP23-456N8 from chromosome... 40 4.2
14ref|XM_569047.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 4.2
15gb|AC115356.5| Mus musculus BAC clone RP23-47E9 from 15, complet... 40 4.2
16gb|AC144345.18| Medicago truncatula clone mth2-25i7, complete se... 40 4.2
17gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 4.2
18dbj|AK147422.1| Mus musculus cDNA, RIKEN full-length enriched li... 40 4.2
19dbj|AK147316.1| Mus musculus adult male brain UNDEFINED_CELL_LIN... 40 4.2
20ref|NM_080793.3| Mus musculus SET domain containing (lysine meth... 40 4.2
21dbj|AK147667.1| Mus musculus adult male brain UNDEFINED_CELL_LIN... 40 4.2
22dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
23dbj|AP005646.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
24emb|AL355836.3|CNS05TCQ Human chromosome 14 DNA sequence BAC R-8... 40 4.2
25gb|AC102860.13| Mus musculus chromosome 3, clone RP24-511H12, co... 40 4.2

>gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0020H14,
              complete sequence
          Length = 185623

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 279    cggcggctgcggctgccggggcg 301
              |||||||||||||||||||||||
Sbjct: 100348 cggcggctgcggctgccggggcg 100370



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>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01,
              complete sequence
          Length = 160142

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 279    cggcggctgcggctgccggggcg 301
              |||||||||||||||||||||||
Sbjct: 139575 cggcggctgcggctgccggggcg 139597



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 279      cggcggctgcggctgccggggcg 301
                |||||||||||||||||||||||
Sbjct: 21546492 cggcggctgcggctgccggggcg 21546514



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 274      gccatcggcggctgcggctgc 294
                |||||||||||||||||||||
Sbjct: 21096860 gccatcggcggctgcggctgc 21096880



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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 281     gcggctgcggctgccggggcgg 302
               ||||||||||||||||||||||
Sbjct: 1927730 gcggctgcggctgccggggcgg 1927709



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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 281     gcggctgcggctgccggggcgg 302
               ||||||||||||||||||||||
Sbjct: 1156141 gcggctgcggctgccggggcgg 1156120



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>ref|XM_838505.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1424)
            partial mRNA
          Length = 3090

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 281  gcggctgcggctgccggggcgg 302
            ||||||||||||||||||||||
Sbjct: 1628 gcggctgcggctgccggggcgg 1607



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>ref|XM_475286.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 621

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 274 gccatcggcggctgcggctgc 294
           |||||||||||||||||||||
Sbjct: 208 gccatcggcggctgcggctgc 228



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>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07,
             complete sequence
          Length = 106166

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 274   gccatcggcggctgcggctgc 294
             |||||||||||||||||||||
Sbjct: 75725 gccatcggcggctgcggctgc 75745



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>emb|AJ430531.1|CRE430531 Chlamydomonas reinhardtii partial mRNA for light regulation of
            gametogenesis 6 protein (lrg6 gene)
          Length = 3129

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 281  gcggctgcggctgccggggcg 301
            |||||||||||||||||||||
Sbjct: 1087 gcggctgcggctgccggggcg 1067



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>emb|AJ431665.1|CRE431665 Chlamydomonas reinhardtii lrg6 gene for putative transporter, exons
            1-11
          Length = 6720

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 281  gcggctgcggctgccggggcg 301
            |||||||||||||||||||||
Sbjct: 3297 gcggctgcggctgccggggcg 3277



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>emb|AL645589.24| Mouse DNA sequence from clone RP23-289H16 on chromosome 11 Contains the
              3' end of the Vdac1 gene for voltage-dependent anion
              channel 1, a novel gene (9530068E07Rik), a
              ubiquinol-cytochrome c reductase subunit (Uqcr) pseudogene,
              a novel pseudogene, a ribosomal protein S28 (Rps28)
              pseudogene and a CpG island, complete sequence
          Length = 165536

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 69     cctcctctcctcgtccccactcctg 93
              |||||||||||| ||||||||||||
Sbjct: 143314 cctcctctcctcctccccactcctg 143290



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>emb|AJ431664.1|CRE431664 Chlamydomonas reinhardtii mRNA for putative transporter (lrg6 gene)
          Length = 2290

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 281  gcggctgcggctgccggggcg 301
            |||||||||||||||||||||
Sbjct: 1087 gcggctgcggctgccggggcg 1067



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>gb|AC157944.2| Mus musculus BAC clone RP23-456N8 from chromosome 15, complete sequence
          Length = 179092

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 57    tctcaccttactcctcctctcctcgtccccac 88
             ||||| ||| |||||||||||||| |||||||
Sbjct: 60740 tctcatcttcctcctcctctcctcctccccac 60771



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>ref|XM_569047.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNB01600) partial mRNA
          Length = 1206

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   tcaccttactcctcctctcc 78
            ||||||||||||||||||||
Sbjct: 1005 tcaccttactcctcctctcc 1024



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>gb|AC115356.5| Mus musculus BAC clone RP23-47E9 from 15, complete sequence
          Length = 212177

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 57     tctcaccttactcctcctctcctcgtccccac 88
              ||||| ||| |||||||||||||| |||||||
Sbjct: 187218 tctcatcttcctcctcctctcctcctccccac 187249



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>gb|AC144345.18| Medicago truncatula clone mth2-25i7, complete sequence
          Length = 125283

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    actcctcctctcctcgtccc 85
             ||||||||||||||||||||
Sbjct: 21302 actcctcctctcctcgtccc 21321



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>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete
              sequence
          Length = 1632307

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     tcaccttactcctcctctcc 78
              ||||||||||||||||||||
Sbjct: 479948 tcaccttactcctcctctcc 479967



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>dbj|AK147422.1| Mus musculus cDNA, RIKEN full-length enriched library,
           clone:M5C1038J18 product:SET domain-containing protein
           7, full insert sequence
          Length = 7357

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 279 cggcggctgcggctgccggggcgggcgg 306
           |||||||||||||||||| ||| |||||
Sbjct: 56  cggcggctgcggctgccgcggctggcgg 83



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>dbj|AK147316.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN
           full-length enriched library, clone:M5C1012I02
           product:SET domain-containing protein 7, full insert
           sequence
          Length = 7412

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 279 cggcggctgcggctgccggggcgggcgg 306
           |||||||||||||||||| ||| |||||
Sbjct: 111 cggcggctgcggctgccgcggctggcgg 138



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>ref|NM_080793.3| Mus musculus SET domain containing (lysine methyltransferase) 7
           (Setd7), mRNA
          Length = 7357

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 279 cggcggctgcggctgccggggcgggcgg 306
           |||||||||||||||||| ||| |||||
Sbjct: 56  cggcggctgcggctgccgcggctggcgg 83



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>dbj|AK147667.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN
           full-length enriched library, clone:M5C1105H05
           product:SET domain-containing protein 7, full insert
           sequence
          Length = 7389

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 279 cggcggctgcggctgccggggcgggcgg 306
           |||||||||||||||||| ||| |||||
Sbjct: 89  cggcggctgcggctgccgcggctggcgg 116



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 281      gcggctgcggctgccggggcgggcggcg 308
                ||||| ||||| ||||||||||||||||
Sbjct: 13844456 gcggcagcggcggccggggcgggcggcg 13844429



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>dbj|AP005646.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1077E08
          Length = 145275

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 281   gcggctgcggctgccggggcgggcggcg 308
             ||||| ||||| ||||||||||||||||
Sbjct: 98596 gcggcagcggcggccggggcgggcggcg 98569



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>emb|AL355836.3|CNS05TCQ Human chromosome 14 DNA sequence BAC R-8L8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166894

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 56    gtctcaccttactcctcctctcct 79
             ||||||||||||| ||||||||||
Sbjct: 96293 gtctcaccttacttctcctctcct 96270



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>gb|AC102860.13| Mus musculus chromosome 3, clone RP24-511H12, complete sequence
          Length = 202315

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 279    cggcggctgcggctgccggggcgggcgg 306
              |||||||||||||||||| ||| |||||
Sbjct: 100332 cggcggctgcggctgccgcggctggcgg 100305


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,116,562
Number of Sequences: 3902068
Number of extensions: 2116562
Number of successful extensions: 48078
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47916
Number of HSP's gapped (non-prelim): 162
length of query: 319
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 297
effective length of database: 17,147,199,772
effective search space: 5092718332284
effective search space used: 5092718332284
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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