Clone Name | bart61a10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0020H14, complete sequence Length = 185623 Score = 46.1 bits (23), Expect = 0.068 Identities = 23/23 (100%) Strand = Plus / Plus Query: 279 cggcggctgcggctgccggggcg 301 ||||||||||||||||||||||| Sbjct: 100348 cggcggctgcggctgccggggcg 100370
>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01, complete sequence Length = 160142 Score = 46.1 bits (23), Expect = 0.068 Identities = 23/23 (100%) Strand = Plus / Plus Query: 279 cggcggctgcggctgccggggcg 301 ||||||||||||||||||||||| Sbjct: 139575 cggcggctgcggctgccggggcg 139597
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.068 Identities = 23/23 (100%) Strand = Plus / Plus Query: 279 cggcggctgcggctgccggggcg 301 ||||||||||||||||||||||| Sbjct: 21546492 cggcggctgcggctgccggggcg 21546514 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 gccatcggcggctgcggctgc 294 ||||||||||||||||||||| Sbjct: 21096860 gccatcggcggctgcggctgc 21096880
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 281 gcggctgcggctgccggggcgg 302 |||||||||||||||||||||| Sbjct: 1927730 gcggctgcggctgccggggcgg 1927709
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 281 gcggctgcggctgccggggcgg 302 |||||||||||||||||||||| Sbjct: 1156141 gcggctgcggctgccggggcgg 1156120
>ref|XM_838505.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1424) partial mRNA Length = 3090 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 281 gcggctgcggctgccggggcgg 302 |||||||||||||||||||||| Sbjct: 1628 gcggctgcggctgccggggcgg 1607
>ref|XM_475286.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 621 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 gccatcggcggctgcggctgc 294 ||||||||||||||||||||| Sbjct: 208 gccatcggcggctgcggctgc 228
>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07, complete sequence Length = 106166 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 gccatcggcggctgcggctgc 294 ||||||||||||||||||||| Sbjct: 75725 gccatcggcggctgcggctgc 75745
>emb|AJ430531.1|CRE430531 Chlamydomonas reinhardtii partial mRNA for light regulation of gametogenesis 6 protein (lrg6 gene) Length = 3129 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 281 gcggctgcggctgccggggcg 301 ||||||||||||||||||||| Sbjct: 1087 gcggctgcggctgccggggcg 1067
>emb|AJ431665.1|CRE431665 Chlamydomonas reinhardtii lrg6 gene for putative transporter, exons 1-11 Length = 6720 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 281 gcggctgcggctgccggggcg 301 ||||||||||||||||||||| Sbjct: 3297 gcggctgcggctgccggggcg 3277
>emb|AL645589.24| Mouse DNA sequence from clone RP23-289H16 on chromosome 11 Contains the 3' end of the Vdac1 gene for voltage-dependent anion channel 1, a novel gene (9530068E07Rik), a ubiquinol-cytochrome c reductase subunit (Uqcr) pseudogene, a novel pseudogene, a ribosomal protein S28 (Rps28) pseudogene and a CpG island, complete sequence Length = 165536 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 69 cctcctctcctcgtccccactcctg 93 |||||||||||| |||||||||||| Sbjct: 143314 cctcctctcctcctccccactcctg 143290
>emb|AJ431664.1|CRE431664 Chlamydomonas reinhardtii mRNA for putative transporter (lrg6 gene) Length = 2290 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 281 gcggctgcggctgccggggcg 301 ||||||||||||||||||||| Sbjct: 1087 gcggctgcggctgccggggcg 1067
>gb|AC157944.2| Mus musculus BAC clone RP23-456N8 from chromosome 15, complete sequence Length = 179092 Score = 40.1 bits (20), Expect = 4.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 57 tctcaccttactcctcctctcctcgtccccac 88 ||||| ||| |||||||||||||| ||||||| Sbjct: 60740 tctcatcttcctcctcctctcctcctccccac 60771
>ref|XM_569047.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNB01600) partial mRNA Length = 1206 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tcaccttactcctcctctcc 78 |||||||||||||||||||| Sbjct: 1005 tcaccttactcctcctctcc 1024
>gb|AC115356.5| Mus musculus BAC clone RP23-47E9 from 15, complete sequence Length = 212177 Score = 40.1 bits (20), Expect = 4.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 57 tctcaccttactcctcctctcctcgtccccac 88 ||||| ||| |||||||||||||| ||||||| Sbjct: 187218 tctcatcttcctcctcctctcctcctccccac 187249
>gb|AC144345.18| Medicago truncatula clone mth2-25i7, complete sequence Length = 125283 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 actcctcctctcctcgtccc 85 |||||||||||||||||||| Sbjct: 21302 actcctcctctcctcgtccc 21321
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tcaccttactcctcctctcc 78 |||||||||||||||||||| Sbjct: 479948 tcaccttactcctcctctcc 479967
>dbj|AK147422.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1038J18 product:SET domain-containing protein 7, full insert sequence Length = 7357 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 279 cggcggctgcggctgccggggcgggcgg 306 |||||||||||||||||| ||| ||||| Sbjct: 56 cggcggctgcggctgccgcggctggcgg 83
>dbj|AK147316.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1012I02 product:SET domain-containing protein 7, full insert sequence Length = 7412 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 279 cggcggctgcggctgccggggcgggcgg 306 |||||||||||||||||| ||| ||||| Sbjct: 111 cggcggctgcggctgccgcggctggcgg 138
>ref|NM_080793.3| Mus musculus SET domain containing (lysine methyltransferase) 7 (Setd7), mRNA Length = 7357 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 279 cggcggctgcggctgccggggcgggcgg 306 |||||||||||||||||| ||| ||||| Sbjct: 56 cggcggctgcggctgccgcggctggcgg 83
>dbj|AK147667.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1105H05 product:SET domain-containing protein 7, full insert sequence Length = 7389 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 279 cggcggctgcggctgccggggcgggcgg 306 |||||||||||||||||| ||| ||||| Sbjct: 89 cggcggctgcggctgccgcggctggcgg 116
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 281 gcggctgcggctgccggggcgggcggcg 308 ||||| ||||| |||||||||||||||| Sbjct: 13844456 gcggcagcggcggccggggcgggcggcg 13844429
>dbj|AP005646.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1077E08 Length = 145275 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 281 gcggctgcggctgccggggcgggcggcg 308 ||||| ||||| |||||||||||||||| Sbjct: 98596 gcggcagcggcggccggggcgggcggcg 98569
>emb|AL355836.3|CNS05TCQ Human chromosome 14 DNA sequence BAC R-8L8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 166894 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 gtctcaccttactcctcctctcct 79 ||||||||||||| |||||||||| Sbjct: 96293 gtctcaccttacttctcctctcct 96270
>gb|AC102860.13| Mus musculus chromosome 3, clone RP24-511H12, complete sequence Length = 202315 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 279 cggcggctgcggctgccggggcgggcgg 306 |||||||||||||||||| ||| ||||| Sbjct: 100332 cggcggctgcggctgccgcggctggcgg 100305 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,116,562 Number of Sequences: 3902068 Number of extensions: 2116562 Number of successful extensions: 48078 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47916 Number of HSP's gapped (non-prelim): 162 length of query: 319 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 297 effective length of database: 17,147,199,772 effective search space: 5092718332284 effective search space used: 5092718332284 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)