ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart61a09 |
|---|---|
| Clone Library Name | barley_pub |
>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)| Length = 1513 Score = 32.7 bits (73), Expect = 0.21 Identities = 23/81 (28%), Positives = 31/81 (38%) Frame = +1 Query: 4 TINRLTLSVPNPTTSTITSVLPGARFPCPSESSTS*QPWTARATPXXXXXXXXXXXXXXX 183 T + LT S +PTTS ITS + P S +S + P T+ +P Sbjct: 1414 TTSPLTSSATSPTTSHITSTVSPTTSPTTSTTSPTTSPTTSTTSPTTSTTSPTPSPTTST 1473 Query: 184 TSIPRRSTAPRHSRDRRSPIP 246 T S P + SP P Sbjct: 1474 T-----SPTPSPTTSTTSPTP 1489
>LCR80_ARATH (P82789) Putative low-molecular-weight cysteine-rich protein LCR80| precursor Length = 122 Score = 30.4 bits (67), Expect = 1.0 Identities = 17/47 (36%), Positives = 20/47 (42%) Frame = -1 Query: 213 RCRAPSGDRSEALLPRPVAQARLAVWCSPCRPWLLAGGALGRTGEAC 73 RC+A G E+ PV L C P L G LG GE+C Sbjct: 42 RCKAKHGPSCESKCDGPVGML-LCTCTYECGPTKLCNGGLGNCGESC 87
>HXC10_MOUSE (P31257) Homeobox protein Hox-C10 (Hox-3.6)| Length = 342 Score = 29.3 bits (64), Expect = 2.3 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +3 Query: 192 PPTEHGTAPQPGSQVSYPPMPKA 260 P TEH +PQ G +VS+P PK+ Sbjct: 182 PRTEHLESPQLGGKVSFPETPKS 204
>GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(II) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 666 Score = 29.3 bits (64), Expect = 2.3 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 186 FYPPTEHGTAPQPGSQVSYPPMPKAM 263 ++PP E P P SQ YP MP A+ Sbjct: 211 YWPPAELQYLPPPESQYGYPGMPPAL 236
>PKN2_CORGL (Q8NU97) Serine/threonine protein kinases pknA (EC 2.7.11.1)| Length = 469 Score = 28.9 bits (63), Expect = 3.0 Identities = 18/59 (30%), Positives = 22/59 (37%) Frame = +1 Query: 37 PTTSTITSVLPGARFPCPSESSTS*QPWTARATPXXXXXXXXXXXXXXXTSIPRRSTAP 213 PT ST T + P SE STS +P T T S+P + AP Sbjct: 393 PTRSTFTEPETTSHRPTTSEESTSEEPTTEAPTSSRTVPQIPTSTPRTSASVPVETNAP 451
>GAK6_HUMAN (P62685) HERV-K_8p23.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K115 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 646 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 186 FYPPTEHGTAPQPGSQVSYPPMPKA 260 ++PP E P P SQ YP MP A Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPA 235
>HIS81_GLUOX (Q5FRR4) Histidinol-phosphate aminotransferase 1 (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase 1) Length = 401 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Frame = -1 Query: 261 WPLASGDRRPAIPAVARCRAPSGDRSEALLPRPVAQARLAVWCSPCRP--WLLAGGALGR 88 WP G R AIP A R +A+ P+ ++ ++ +P P L+ G A+ Sbjct: 150 WPQMMGARAEAIPMTADARFDLPQLHQAVTSDPL---KVLMFSNPSNPVGCLMTGDAMQS 206 Query: 87 TGEACP 70 +ACP Sbjct: 207 LIDACP 212
>PLS1_HUMAN (O15162) Phospholipid scramblase 1 (PL scramblase 1)| (Ca(2+)-dependent phospholipid scramblase 1) (Erythrocyte phospholipid scramblase) (MmTRA1b) Length = 318 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 4/26 (15%) Frame = +3 Query: 189 YPPTEH----GTAPQPGSQVSYPPMP 254 YPPT G + PG QVSYPP P Sbjct: 25 YPPTAFQGPPGYSGYPGPQVSYPPPP 50
>GAK5_HUMAN (P62684) HERV-K_19p13.11 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K113 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 186 FYPPTEHGTAPQPGSQVSYPPMPKA 260 ++PP E P P SQ YP MP A Sbjct: 211 YWPPAELQYQPPPESQYGYPGMPPA 235
>GAK4_HUMAN (P63126) HERV-K_6q14.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K109 Gag protein) (HERV-K(C6) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 186 FYPPTEHGTAPQPGSQVSYPPMPKA 260 ++PP E P P SQ YP MP A Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPA 235
>GAK2_HUMAN (Q7LDI9) HERV-K_7p22.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(HML-2.HOM) Gag protein) (HERV-K108 Gag protein) (HERV-K(C7) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 186 FYPPTEHGTAPQPGSQVSYPPMPKA 260 ++PP E P P SQ YP MP A Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPA 235
>GAK1_HUMAN (P62683) HERV-K_12q14.1 provirus ancestral Gag polyprotein (Gag| polyprotein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 186 FYPPTEHGTAPQPGSQVSYPPMPKA 260 ++PP E P P SQ YP MP A Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPA 235
>GAK12_HUMAN (P63130) HERV-K_1q22 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K102 Gag protein) (HERV-K(III) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 186 FYPPTEHGTAPQPGSQVSYPPMPKA 260 ++PP E P P SQ YP MP A Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPA 235
>GAK11_HUMAN (P63145) HERV-K_22q11.21 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K101 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 186 FYPPTEHGTAPQPGSQVSYPPMPKA 260 ++PP E P P SQ YP MP A Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPA 235
>GAK10_HUMAN (P87889) HERV-K_5q33.3 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K10 Gag protein) (HERV-K107 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 186 FYPPTEHGTAPQPGSQVSYPPMPKA 260 ++PP E P P SQ YP MP A Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPA 235
>ATS16_MOUSE (Q69Z28) ADAMTS-16 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 16) (ADAM-TS 16) (ADAM-TS16) Length = 1222 Score = 28.1 bits (61), Expect = 5.2 Identities = 21/76 (27%), Positives = 26/76 (34%) Frame = +1 Query: 34 NPTTSTITSVLPGARFPCPSESSTS*QPWTARATPXXXXXXXXXXXXXXXTSIPRRSTAP 213 NP T +T ++P PCPS S W+ S P R T Sbjct: 908 NPKTRPVTGLVPCKVSPCPSSWSVG--NWSV----------CSRTCGGGTQSRPVRCTRR 955 Query: 214 RHSRDRRSPIPRCQRP 261 H RD P C +P Sbjct: 956 AHYRDESIPASLCPQP 971
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/40 (37%), Positives = 25/40 (62%) Frame = +2 Query: 143 ANRACATGRGRSASLLSPDGARHRATAGIAGLLSPDAKGH 262 ++R ATGRG+++S +S G R G +G + D++GH Sbjct: 394 SSRHSATGRGQASSAVSDRGHR-----GSSGSQASDSEGH 428
>PER1_RAT (Q8CHI5) Period circadian protein 1 (rPER1) (Fragment)| Length = 1244 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/72 (26%), Positives = 27/72 (37%) Frame = +3 Query: 192 PPTEHGTAPQPGSQVSYPPMPKAMXXXXXXXXXXXXXXXXXXXLTQQAMELEGKYAAPQP 371 PPT +P P S PP P +++ EG AA P Sbjct: 942 PPTPASHSPSP-SLPPPPPSPPHRPDSPLFNSRCSSPLQLNLLQLEESPRTEGGAAAGGP 1000 Query: 372 GTGATPSPPTQQ 407 G+ A P PP+++ Sbjct: 1001 GSSAGPLPPSEE 1012
>NR1H2_HUMAN (P55055) Oxysterols receptor LXR-beta (Liver X receptor beta)| (Nuclear orphan receptor LXR-beta) (Ubiquitously-expressed nuclear receptor) (Nuclear receptor NER) Length = 461 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 7/79 (8%) Frame = +1 Query: 34 NPTTSTITSVLPGARFPCPSESSTS-------*QPWTARATPXXXXXXXXXXXXXXXTSI 192 +PTTS++ + LPG P P S+S +PW P I Sbjct: 3 SPTTSSLDTPLPGNGPPQPGAPSSSPTVKEEGPEPWPGGPDPDVPGTDEASSACSTDWVI 62 Query: 193 PRRSTAPRHSRDRRSPIPR 249 P P R ++ P P+ Sbjct: 63 PDPEEEPERKR-KKGPAPK 80
>CAP1_DICDI (P19198) cAMP-binding protein CABP1A/CABP1B (CABP1 protein)| Length = 333 Score = 27.7 bits (60), Expect = 6.8 Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 4/72 (5%) Frame = +3 Query: 195 PTEHGTAPQPGSQVSYPP--MPKAMXXXXXXXXXXXXXXXXXXXLTQQAMELEGKYAAPQ 368 P + T P PG+ YPP P A + G+Y APQ Sbjct: 67 PGGYPTPPPPGAPGGYPPQQQPAGQYGAPPQQQPAGQYGAPQPAGQYGAPQPAGQYGAPQ 126 Query: 369 PG--TGATPSPP 398 P GA P PP Sbjct: 127 PAGQYGAPPPPP 138
>HXC10_HUMAN (Q9NYD6) Homeobox protein Hox-C10| Length = 342 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 192 PPTEHGTAPQPGSQVSYPPMPKA 260 P EH +PQ G +VS+P PK+ Sbjct: 182 PRAEHLESPQLGGKVSFPETPKS 204
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 27.3 bits (59), Expect = 8.9 Identities = 20/75 (26%), Positives = 23/75 (30%), Gaps = 3/75 (4%) Frame = +3 Query: 192 PPTEHGTAPQPGSQVSYPPMPK---AMXXXXXXXXXXXXXXXXXXXLTQQAMELEGKYAA 362 PP P P + + P P A LTQ A G A Sbjct: 1594 PPHPLPDPPSPATPLPAAPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGAPAAPGDPPA 1653 Query: 363 PQPGTGATPSPPTQQ 407 P P A P+PP Q Sbjct: 1654 PGPPAPAAPAPPAPQ 1668
>GP112_HUMAN (Q8IZF6) Probable G-protein coupled receptor 112| Length = 2799 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%) Frame = +1 Query: 19 TLSVPNPTTS------TITSVLPGARFPCPSESSTS*QPWTA 126 TL +P PT T TS +PGA FP S T P+TA Sbjct: 2103 TLIIPKPTLDSLLNIMTTTSTVPGASFPLISTGVT--YPFTA 2142
>PAPOA_HUMAN (P51003) Poly(A) polymerase alpha (EC 2.7.7.19) (PAP)| (Polynucleotide adenylyltransferase alpha) Length = 744 Score = 27.3 bits (59), Expect = 8.9 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 6/83 (7%) Frame = +1 Query: 19 TLSVPNPTTSTITSVL------PGARFPCPSESSTS*QPWTARATPXXXXXXXXXXXXXX 180 ++SVP+PT++T TS L G P P+ ++ S A Sbjct: 531 SMSVPSPTSATKTSPLNSSGSSQGRNSPAPAVTAASVTNIQATEVSVPQVNSSESSGGTS 590 Query: 181 XTSIPRRSTAPRHSRDRRSPIPR 249 SIP+ +T P S + + R Sbjct: 591 SESIPQTATQPAISPPPKPTVSR 613
>TBX2_MOUSE (Q60707) T-box transcription factor TBX2 (T-box protein 2)| Length = 701 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 264 PWPLASGDRRPAIPAVARCRAPSGDRSEALLPRP 163 P P +G+ R A P CR+PS D S A L P Sbjct: 352 PEPERTGEERSAAPL---CRSPSRDASPARLTEP 382
>ADA1D_MOUSE (P97714) Alpha-1D adrenergic receptor (Alpha 1D-adrenoceptor)| (Alpha 1D-adrenoreceptor) (Alpha-1A adrenergic receptor) Length = 562 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/35 (51%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Frame = -1 Query: 258 PLASGDRRPAI---PAVARCRAPSGDRSEALLPRP 163 PLAS DRRPA+ P A R P G S PRP Sbjct: 429 PLASLDRRPALRLCPQPAH-RTPRGSPSPHCTPRP 462 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,907,663 Number of Sequences: 219361 Number of extensions: 912827 Number of successful extensions: 4391 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3987 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4378 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
