ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart61a06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 117 bits (59), Expect = 3e-23 Identities = 104/119 (87%) Strand = Plus / Plus Query: 48 accatgtcggccgcctacgaccgcgcggccgagctccgcgcgctggacgccaccttcgcc 107 |||||||| ||| |||||||||||| ||||||| ||||||||| |||||||||| || Sbjct: 5525512 accatgtctgccacctacgaccgcgaagccgagcaccgcgcgctcaacgccaccttgtcc 5525571 Query: 108 ggcgtgcacggcctcgtcgcctccggcgtcacccgcgtcccccgcatcttccgcgtccc 166 || || ||||||||||||||||| ||||||||| ||||||| |||||||||||||||| Sbjct: 5525572 ggagtccacggcctcgtcgcctcgggcgtcaccgccgtccccagcatcttccgcgtccc 5525630 Score = 109 bits (55), Expect = 8e-21 Identities = 91/103 (88%) Strand = Plus / Plus Query: 57 gccgcctacgaccgcgcggccgagctccgcgcgctggacgccaccttcgccggcgtgcac 116 ||||||||||||||| | ||||||||||||||||| ||||||||| || ||||||| | | Sbjct: 5555300 gccgcctacgaccgcaccgccgagctccgcgcgctcgacgccaccctctccggcgtccgc 5555359 Query: 117 ggcctcgtcgcctccggcgtcacccgcgtcccccgcatcttcc 159 ||||||||||| || |||| ||||| | ||||||||||||||| Sbjct: 5555360 ggcctcgtcgcgtcgggcgccacccacctcccccgcatcttcc 5555402 Score = 99.6 bits (50), Expect = 8e-18 Identities = 74/82 (90%) Strand = Plus / Plus Query: 371 cggcggcgagggcaccgacaaggcgcggctctacacccgcgatccggcgatggccgtcaa 430 |||| ||||||||| ||||||||||||||||||| | || || ||||||| ||||| ||| Sbjct: 5525834 cggcagcgagggcagcgacaaggcgcggctctactcgcgtgacccggcgagggccgccaa 5525893 Query: 431 gtacaactgcaacttcgacctg 452 |||||||||||||||||||||| Sbjct: 5525894 gtacaactgcaacttcgacctg 5525915 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 211 ccgtcccggtgatcgacctcggcggggaccgcgcggccgtggtggcggccgtggggcgcg 270 ||||||||||||||||| || ||||| ||||||||||||||| | ||||| |||| | Sbjct: 5555475 ccgtcccggtgatcgacatcagcgggagccgcgcggccgtggtcgacgccgtccggcggg 5555534 Query: 271 ccgcggccgagtgggggttcttccaggtgacgggccacgg 310 | ||||| |||||||||||||||||||||||||| ||||| Sbjct: 5555535 cggcggcggagtgggggttcttccaggtgacggggcacgg 5555574 Score = 89.7 bits (45), Expect = 8e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 372 ggcggcgagggcaccgacaaggcgcggctctacacccgcgatccggcgatggccgtcaag 431 ||||||||||||| ||||||||||||||||||| | ||||| || | || ||||||||| Sbjct: 5555636 ggcggcgagggcagcgacaaggcgcggctctactcgcgcgagcccgggagagccgtcaag 5555695 Query: 432 tacaactgcaacttcgacctg 452 ||| ||||||||||||||||| Sbjct: 5555696 taccactgcaacttcgacctg 5555716 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 265 ggcgcgccgcggccgagtgggggttcttccaggtgacgggccacggcgt 313 |||||||||||| ||||||| ||| || ||||||||||||||||||| Sbjct: 5525756 ggcgcgccgcggtggagtgggcattcctctaggtgacgggccacggcgt 5525804 Score = 40.1 bits (20), Expect = 6.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 279 gagtgggggttcttccaggtgacgggccacggcgtg 314 |||||||||||||||||| |||| |||||||||| Sbjct: 26107429 gagtgggggttcttccagctgaccaaccacggcgtg 26107394
>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01, complete sequence Length = 150283 Score = 117 bits (59), Expect = 3e-23 Identities = 104/119 (87%) Strand = Plus / Plus Query: 48 accatgtcggccgcctacgaccgcgcggccgagctccgcgcgctggacgccaccttcgcc 107 |||||||| ||| |||||||||||| ||||||| ||||||||| |||||||||| || Sbjct: 80142 accatgtctgccacctacgaccgcgaagccgagcaccgcgcgctcaacgccaccttgtcc 80201 Query: 108 ggcgtgcacggcctcgtcgcctccggcgtcacccgcgtcccccgcatcttccgcgtccc 166 || || ||||||||||||||||| ||||||||| ||||||| |||||||||||||||| Sbjct: 80202 ggagtccacggcctcgtcgcctcgggcgtcaccgccgtccccagcatcttccgcgtccc 80260 Score = 109 bits (55), Expect = 8e-21 Identities = 91/103 (88%) Strand = Plus / Plus Query: 57 gccgcctacgaccgcgcggccgagctccgcgcgctggacgccaccttcgccggcgtgcac 116 ||||||||||||||| | ||||||||||||||||| ||||||||| || ||||||| | | Sbjct: 109930 gccgcctacgaccgcaccgccgagctccgcgcgctcgacgccaccctctccggcgtccgc 109989 Query: 117 ggcctcgtcgcctccggcgtcacccgcgtcccccgcatcttcc 159 ||||||||||| || |||| ||||| | ||||||||||||||| Sbjct: 109990 ggcctcgtcgcgtcgggcgccacccacctcccccgcatcttcc 110032 Score = 99.6 bits (50), Expect = 8e-18 Identities = 74/82 (90%) Strand = Plus / Plus Query: 371 cggcggcgagggcaccgacaaggcgcggctctacacccgcgatccggcgatggccgtcaa 430 |||| ||||||||| ||||||||||||||||||| | || || ||||||| ||||| ||| Sbjct: 80464 cggcagcgagggcagcgacaaggcgcggctctactcgcgtgacccggcgagggccgccaa 80523 Query: 431 gtacaactgcaacttcgacctg 452 |||||||||||||||||||||| Sbjct: 80524 gtacaactgcaacttcgacctg 80545 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 211 ccgtcccggtgatcgacctcggcggggaccgcgcggccgtggtggcggccgtggggcgcg 270 ||||||||||||||||| || ||||| ||||||||||||||| | ||||| |||| | Sbjct: 110105 ccgtcccggtgatcgacatcagcgggagccgcgcggccgtggtcgacgccgtccggcggg 110164 Query: 271 ccgcggccgagtgggggttcttccaggtgacgggccacgg 310 | ||||| |||||||||||||||||||||||||| ||||| Sbjct: 110165 cggcggcggagtgggggttcttccaggtgacggggcacgg 110204 Score = 89.7 bits (45), Expect = 8e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 372 ggcggcgagggcaccgacaaggcgcggctctacacccgcgatccggcgatggccgtcaag 431 ||||||||||||| ||||||||||||||||||| | ||||| || | || ||||||||| Sbjct: 110266 ggcggcgagggcagcgacaaggcgcggctctactcgcgcgagcccgggagagccgtcaag 110325 Query: 432 tacaactgcaacttcgacctg 452 ||| ||||||||||||||||| Sbjct: 110326 taccactgcaacttcgacctg 110346 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 265 ggcgcgccgcggccgagtgggggttcttccaggtgacgggccacggcgt 313 |||||||||||| ||||||| ||| || ||||||||||||||||||| Sbjct: 80386 ggcgcgccgcggtggagtgggcattcctctaggtgacgggccacggcgt 80434
>ref|XM_474682.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1128 Score = 109 bits (55), Expect = 8e-21 Identities = 91/103 (88%) Strand = Plus / Plus Query: 57 gccgcctacgaccgcgcggccgagctccgcgcgctggacgccaccttcgccggcgtgcac 116 ||||||||||||||| | ||||||||||||||||| ||||||||| || ||||||| | | Sbjct: 37 gccgcctacgaccgcaccgccgagctccgcgcgctcgacgccaccctctccggcgtccgc 96 Query: 117 ggcctcgtcgcctccggcgtcacccgcgtcccccgcatcttcc 159 ||||||||||| || |||| ||||| | ||||||||||||||| Sbjct: 97 ggcctcgtcgcgtcgggcgccacccacctcccccgcatcttcc 139 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 211 ccgtcccggtgatcgacctcggcggggaccgcgcggccgtggtggcggccgtggggcgcg 270 ||||||||||||||||| || ||||| ||||||||||||||| | ||||| |||| | Sbjct: 212 ccgtcccggtgatcgacatcagcgggagccgcgcggccgtggtcgacgccgtccggcggg 271 Query: 271 ccgcggccgagtgggggttcttccaggtgacgggccacgg 310 | ||||| |||||||||||||||||||||||||| ||||| Sbjct: 272 cggcggcggagtgggggttcttccaggtgacggggcacgg 311 Score = 89.7 bits (45), Expect = 8e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 372 ggcggcgagggcaccgacaaggcgcggctctacacccgcgatccggcgatggccgtcaag 431 ||||||||||||| ||||||||||||||||||| | ||||| || | || ||||||||| Sbjct: 373 ggcggcgagggcagcgacaaggcgcggctctactcgcgcgagcccgggagagccgtcaag 432 Query: 432 tacaactgcaacttcgacctg 452 ||| ||||||||||||||||| Sbjct: 433 taccactgcaacttcgacctg 453
>dbj|AK067970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124E20, full insert sequence Length = 1387 Score = 109 bits (55), Expect = 8e-21 Identities = 91/103 (88%) Strand = Plus / Plus Query: 57 gccgcctacgaccgcgcggccgagctccgcgcgctggacgccaccttcgccggcgtgcac 116 ||||||||||||||| | ||||||||||||||||| ||||||||| || ||||||| | | Sbjct: 47 gccgcctacgaccgcaccgccgagctccgcgcgctcgacgccaccctctccggcgtccgc 106 Query: 117 ggcctcgtcgcctccggcgtcacccgcgtcccccgcatcttcc 159 ||||||||||| || |||| ||||| | ||||||||||||||| Sbjct: 107 ggcctcgtcgcgtcgggcgccacccacctcccccgcatcttcc 149 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 211 ccgtcccggtgatcgacctcggcggggaccgcgcggccgtggtggcggccgtggggcgcg 270 ||||||||||||||||| || ||||| ||||||||||||||| | ||||| |||| | Sbjct: 222 ccgtcccggtgatcgacatcagcgggagccgcgcggccgtggtcgacgccgtccggcggg 281 Query: 271 ccgcggccgagtgggggttcttccaggtgacgggccacgg 310 | ||||| |||||||||||||||||||||||||| ||||| Sbjct: 282 cggcggcggagtgggggttcttccaggtgacggggcacgg 321 Score = 89.7 bits (45), Expect = 8e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 372 ggcggcgagggcaccgacaaggcgcggctctacacccgcgatccggcgatggccgtcaag 431 ||||||||||||| ||||||||||||||||||| | ||||| || | || ||||||||| Sbjct: 383 ggcggcgagggcagcgacaaggcgcggctctactcgcgcgagcccgggagagccgtcaag 442 Query: 432 tacaactgcaacttcgacctg 452 ||| ||||||||||||||||| Sbjct: 443 taccactgcaacttcgacctg 463
>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01, complete sequence Length = 162227 Score = 109 bits (55), Expect = 8e-21 Identities = 91/103 (88%) Strand = Plus / Plus Query: 57 gccgcctacgaccgcgcggccgagctccgcgcgctggacgccaccttcgccggcgtgcac 116 ||||||||||||||| | ||||||||||||||||| ||||||||| || ||||||| | | Sbjct: 12507 gccgcctacgaccgcaccgccgagctccgcgcgctcgacgccaccctctccggcgtccgc 12566 Query: 117 ggcctcgtcgcctccggcgtcacccgcgtcccccgcatcttcc 159 ||||||||||| || |||| ||||| | ||||||||||||||| Sbjct: 12567 ggcctcgtcgcgtcgggcgccacccacctcccccgcatcttcc 12609 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 211 ccgtcccggtgatcgacctcggcggggaccgcgcggccgtggtggcggccgtggggcgcg 270 ||||||||||||||||| || ||||| ||||||||||||||| | ||||| |||| | Sbjct: 12682 ccgtcccggtgatcgacatcagcgggagccgcgcggccgtggtcgacgccgtccggcggg 12741 Query: 271 ccgcggccgagtgggggttcttccaggtgacgggccacgg 310 | ||||| |||||||||||||||||||||||||| ||||| Sbjct: 12742 cggcggcggagtgggggttcttccaggtgacggggcacgg 12781 Score = 89.7 bits (45), Expect = 8e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 372 ggcggcgagggcaccgacaaggcgcggctctacacccgcgatccggcgatggccgtcaag 431 ||||||||||||| ||||||||||||||||||| | ||||| || | || ||||||||| Sbjct: 12843 ggcggcgagggcagcgacaaggcgcggctctactcgcgcgagcccgggagagccgtcaag 12902 Query: 432 tacaactgcaacttcgacctg 452 ||| ||||||||||||||||| Sbjct: 12903 taccactgcaacttcgacctg 12923
>ref|NM_188380.1| Oryza sativa (japonica cultivar-group), Ozsa8106 predicted mRNA Length = 1008 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 284 ggggttcttccaggtgacgggccacggcgtgccgc 318 ||||||||||| ||||||||||||||||||||||| Sbjct: 150 ggggttcttccgggtgacgggccacggcgtgccgc 184
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 284 ggggttcttccaggtgacgggccacggcgtgccgc 318 ||||||||||| ||||||||||||||||||||||| Sbjct: 5971235 ggggttcttccgggtgacgggccacggcgtgccgc 5971201 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 249 gtggtggcggccgtggggcgcgccgcggccga 280 ||||||||||||||| || |||||||||||| Sbjct: 18183806 gtggtggcggccgtgaggaacgccgcggccga 18183775
>dbj|AP002093.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0466B10 Length = 151806 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 284 ggggttcttccaggtgacgggccacggcgtgccgc 318 ||||||||||| ||||||||||||||||||||||| Sbjct: 39123 ggggttcttccgggtgacgggccacggcgtgccgc 39089
>dbj|AK108802.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-C10, full insert sequence Length = 1336 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 284 ggggttcttccaggtgacgggccacggcgtgccgc 318 ||||||||||| ||||||||||||||||||||||| Sbjct: 255 ggggttcttccgggtgacgggccacggcgtgccgc 289
>gb|AC130599.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0016G07, complete sequence Length = 123167 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 285 gggttcttccaggtgacgggccacggcgtgccg 317 ||||||||| ||||||||||||||||||||||| Sbjct: 13291 gggttcttcaaggtgacgggccacggcgtgccg 13259
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 285 gggttcttccaggtgacgggccacggcgtgccg 317 ||||||||| ||||||||||||||||||||||| Sbjct: 6642129 gggttcttcaaggtgacgggccacggcgtgccg 6642097 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 285 gggttcttccaggtgacgggccacggcgtgcc 316 |||||||||||||||| || ||||||||||| Sbjct: 20547505 gggttcttccaggtgagcgggcacggcgtgcc 20547474
>dbj|AB213479.1| Oryza meridionalis OsGA20ox2 gene for gibberellin-20 oxidase-2, partial cds, haplotype: ME2 Length = 1474 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 285 gggttcttccaggtgacgggccacggcgt 313 ||||||||||||||| ||||||||||||| Sbjct: 859 gggttcttccaggtgtcgggccacggcgt 887
>dbj|AB213478.1| Oryza meridionalis OsGA20ox2 gene for gibberellin-20 oxidase-2, partial cds, haplotype: ME1 Length = 1474 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 285 gggttcttccaggtgacgggccacggcgt 313 ||||||||||||||| ||||||||||||| Sbjct: 859 gggttcttccaggtgtcgggccacggcgt 887
>gb|AY110514.1| Zea mays CL948_1 mRNA sequence Length = 1344 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 211 ccgtcccggtgatcgacctcggcggggaccgcgcggccgtg 251 |||||||||||||||| ||| |||| |||||||| |||||| Sbjct: 199 ccgtcccggtgatcgatctcagcggcgaccgcgcagccgtg 239 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 428 caagtacaactgcaacttcgacctg 452 ||||||| ||||||||||||||||| Sbjct: 416 caagtaccactgcaacttcgacctg 440
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 115 acggcctcgtcgcctccggcgtc 137 ||||||||||||||||||||||| Sbjct: 2868693 acggcctcgtcgcctccggcgtc 2868715
>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence Length = 150155 Score = 46.1 bits (23), Expect = 0.10 Identities = 38/43 (88%) Strand = Plus / Plus Query: 117 ggcctcgtcgcctccggcgtcacccgcgtcccccgcatcttcc 159 |||||||||| | ||||||||||| |||||| |||||||||| Sbjct: 13690 ggcctcgtcgacgccggcgtcaccgccgtcccgcgcatcttcc 13732
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.10 Identities = 38/43 (88%) Strand = Plus / Minus Query: 117 ggcctcgtcgcctccggcgtcacccgcgtcccccgcatcttcc 159 |||||||||| | ||||||||||| |||||| |||||||||| Sbjct: 27290705 ggcctcgtcgacgccggcgtcaccgccgtcccgcgcatcttcc 27290663
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.10 Identities = 38/43 (88%) Strand = Plus / Minus Query: 117 ggcctcgtcgcctccggcgtcacccgcgtcccccgcatcttcc 159 |||||||||| | ||||||||||| |||||| |||||||||| Sbjct: 27382028 ggcctcgtcgacgccggcgtcaccgccgtcccgcgcatcttcc 27381986
>ref|XM_427226.1| PREDICTED: Gallus gallus similar to cytochrome oxidase deficient homolog 2; SCO (cytochrome oxidase deficient, yeast) homolog 2 (LOC429671), partial mRNA Length = 507 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Plus Query: 239 ccgcgcggccgtggtggcggccgtggggcgcgccgcgg 276 ||||| ||||||||||||||| |||||| | ||||||| Sbjct: 144 ccgcgtggccgtggtggcggcggtggggggggccgcgg 181
>ref|XM_951788.1| Neurospora crassa OR74A hypothetical protein ( hypothetical protein B1D1.160 [imported] - Neurospora crassa OR74A ) (NCU01675.1) partial mRNA Length = 3828 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 243 gcggccgtggtggcggccgtgg 264 |||||||||||||||||||||| Sbjct: 3638 gcggccgtggtggcggccgtgg 3659
>ref|XM_328113.1| Neurospora crassa OR74A hypothetical protein ( hypothetical protein B1D1.160 [imported] - Neurospora crassa OR74A ) (NCU01675.1) partial mRNA Length = 3828 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 243 gcggccgtggtggcggccgtgg 264 |||||||||||||||||||||| Sbjct: 3638 gcggccgtggtggcggccgtgg 3659
>emb|AL355927.1|NCB1D1 Neurospora crassa DNA linkage group II BAC clone B1D1 Length = 76072 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 243 gcggccgtggtggcggccgtgg 264 |||||||||||||||||||||| Sbjct: 33274 gcggccgtggtggcggccgtgg 33295
>ref|XM_578804.1| PREDICTED: Rattus norvegicus similar to RAB17, member RAS oncogene family (LOC503269), mRNA Length = 1143 Score = 44.1 bits (22), Expect = 0.40 Identities = 37/42 (88%) Strand = Plus / Minus Query: 126 gcctccggcgtcacccgcgtcccccgcatcttccgcgtcccc 167 |||||| ||||| |||||||||||||| || |||||||||| Sbjct: 64 gcctcccgcgtcccccgcgtcccccgcgtcccccgcgtcccc 23
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 116 cggcctcgtcgcctccggcgtcaccc 141 ||||||||||| |||||||||||||| Sbjct: 2058180 cggcctcgtcggctccggcgtcaccc 2058155 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 cccgcatcttccgcgtccccgacg 171 |||||||||||| ||||||||||| Sbjct: 6362 cccgcatcttccacgtccccgacg 6339
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 cgccaccttcgccggcgtgca 115 ||||||||||||||||||||| Sbjct: 359897 cgccaccttcgccggcgtgca 359877 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 tgacgggccacggcgtgccg 317 |||||||||||||||||||| Sbjct: 1284030 tgacgggccacggcgtgccg 1284011
>ref|XM_476364.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1077 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 282 tgggggttcttccaggtgacgggccacggcgtgccgc 318 ||||| |||||||||||||| |||||||||||||| Sbjct: 838 tggggcttcttccaggtgaccaaccacggcgtgccgc 802
>ref|NM_194218.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1729 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 282 tgggggttcttccaggtgacgggccacggcgtgccgc 318 ||||| |||||||||||||| |||||||||||||| Sbjct: 601 tggggcttcttccaggtgaccaaccacggcgtgccgc 637
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 ggccgagctccgcgcgctgga 94 ||||||||||||||||||||| Sbjct: 614304 ggccgagctccgcgcgctgga 614284
>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence Length = 146175 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 251 ggtggcggccgtggggcgcgccgcggccg 279 |||||||||||||| | |||||||||||| Sbjct: 12993 ggtggcggccgtggtgagcgccgcggccg 13021
>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16 Length = 349746 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 241 gcgcggccgtggtggcggccgtggg 265 ||||||||||||| ||||||||||| Sbjct: 306982 gcgcggccgtggtcgcggccgtggg 306958
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 251 ggtggcggccgtggggcgcgccgcggccg 279 |||||||||||||| | |||||||||||| Sbjct: 1795163 ggtggcggccgtggtgagcgccgcggccg 1795191 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gagtgggggttcttccaggt 298 |||||||||||||||||||| Sbjct: 4398625 gagtgggggttcttccaggt 4398606
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 282 tgggggttcttccaggtgacgggccacggcgtgccgc 318 ||||| |||||||||||||| |||||||||||||| Sbjct: 217415 tggggcttcttccaggtgaccaaccacggcgtgccgc 217451 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 ctcgtcgcctccggcgtcacccgc 143 |||| ||||||||||||||||||| Sbjct: 28966349 ctcgccgcctccggcgtcacccgc 28966326
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 279 gagtgggggttcttccaggtg 299 ||||||||||||||||||||| Sbjct: 25221871 gagtgggggttcttccaggtg 25221851 Score = 40.1 bits (20), Expect = 6.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 273 gcggccgagtgggggttcttccaggtgacgggccacggcgtgcc 316 ||||| ||||||||| ||||||||||| | |||||||||||| Sbjct: 32330413 gcggcggagtgggggctcttccaggtggtgaaccacggcgtgcc 32330370
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 333 gcggcggtggaggccgcccgg 353 ||||||||||||||||||||| Sbjct: 3148973 gcggcggtggaggccgcccgg 3148993
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 282 tgggggttcttccaggtgacgggccacggcgtgccgc 318 ||||| |||||||||||||| |||||||||||||| Sbjct: 52279 tggggcttcttccaggtgaccaaccacggcgtgccgc 52315
>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1469H02 Length = 136602 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 279 gagtgggggttcttccaggtg 299 ||||||||||||||||||||| Sbjct: 122264 gagtgggggttcttccaggtg 122244
>dbj|AK109658.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-F10, full insert sequence Length = 1480 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 251 ggtggcggccgtggggcgcgccgcggccg 279 |||||||||||||| | |||||||||||| Sbjct: 1156 ggtggcggccgtggtgagcgccgcggccg 1184
>dbj|AK109056.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-E10, full insert sequence Length = 1076 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 282 tgggggttcttccaggtgacgggccacggcgtgccgc 318 ||||| |||||||||||||| |||||||||||||| Sbjct: 837 tggggcttcttccaggtgaccaaccacggcgtgccgc 801
>dbj|AK108598.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E04, full insert sequence Length = 1660 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 gagtgggggttcttccaggtg 299 ||||||||||||||||||||| Sbjct: 365 gagtgggggttcttccaggtg 385
>dbj|AK106859.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-C01, full insert sequence Length = 1729 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 282 tgggggttcttccaggtgacgggccacggcgtgccgc 318 ||||| |||||||||||||| |||||||||||||| Sbjct: 601 tggggcttcttccaggtgaccaaccacggcgtgccgc 637
>dbj|AK059045.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-D08, full insert sequence Length = 1741 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 gagtgggggttcttccaggtg 299 ||||||||||||||||||||| Sbjct: 363 gagtgggggttcttccaggtg 383
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 251 ggtggcggccgtggggcgcgccgcggccg 279 |||||||||||||| | |||||||||||| Sbjct: 1792884 ggtggcggccgtggtgagcgccgcggccg 1792912 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gagtgggggttcttccaggt 298 |||||||||||||||||||| Sbjct: 4407319 gagtgggggttcttccaggt 4407300
>gb|AY823527.1| Phaeosphaeria avenaria f. sp. triticae beta-tubulin gene, complete cds Length = 1556 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 106 ccggcgtgcacggcctcgtcgcctccggcgtc 137 |||||| ||||||||||| || |||||||||| Sbjct: 234 ccggcgagcacggcctcgacggctccggcgtc 265
>ref|XM_475240.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1227 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 285 gggttcttccaggtgacgggccacggcgtgcc 316 |||||||||||||||| || ||||||||||| Sbjct: 298 gggttcttccaggtgagcgggcacggcgtgcc 329
>ref|XM_467968.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1222 Score = 40.1 bits (20), Expect = 6.2 Identities = 38/44 (86%) Strand = Plus / Plus Query: 273 gcggccgagtgggggttcttccaggtgacgggccacggcgtgcc 316 ||||| ||||||||| ||||||||||| | |||||||||||| Sbjct: 266 gcggcggagtgggggctcttccaggtggtgaaccacggcgtgcc 309
>ref|NM_193791.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1758 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 249 gtggtggcggccgtggggcgcgccgcggccga 280 ||||||||||||||| || |||||||||||| Sbjct: 113 gtggtggcggccgtgaggaacgccgcggccga 82
>ref|XM_473226.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1077 Score = 40.1 bits (20), Expect = 6.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 279 gagtgggggttcttccaggtgacgggccacggcgtg 314 |||||||||||||||||| |||| |||||||||| Sbjct: 235 gagtgggggttcttccagctgaccaaccacggcgtg 270
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 gcggcggtggaggccgcccg 352 |||||||||||||||||||| Sbjct: 489685 gcggcggtggaggccgcccg 489704
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 cgtcccggtgatcgacctcg 231 |||||||||||||||||||| Sbjct: 2522069 cgtcccggtgatcgacctcg 2522088
>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15, complete sequence Length = 142289 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gagtgggggttcttccaggt 298 |||||||||||||||||||| Sbjct: 49988 gagtgggggttcttccaggt 49969
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 331 ccgcggcggtggaggccgcccggg 354 |||| ||||||||||||||||||| Sbjct: 1933594 ccgcagcggtggaggccgcccggg 1933617
>ref|XM_866268.1| PREDICTED: Bos taurus similar to eomesodermin, transcript variant 3 (LOC511947), mRNA Length = 2071 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 gcggcggtggaggccgcccgggcg 356 |||||||||||||| ||||||||| Sbjct: 653 gcggcggtggaggcggcccgggcg 676
>ref|XM_589376.2| PREDICTED: Bos taurus similar to eomesodermin, transcript variant 2 (LOC511947), mRNA Length = 2128 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 gcggcggtggaggccgcccgggcg 356 |||||||||||||| ||||||||| Sbjct: 653 gcggcggtggaggcggcccgggcg 676
>gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092E21, complete sequence Length = 132649 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 285 gggttcttccaggtgacgggccacggcgtgcc 316 |||||||||||||||| || ||||||||||| Sbjct: 90984 gggttcttccaggtgagcgggcacggcgtgcc 90953
>gb|AY523973.1|AY523972S2 Azospirillum brasilense plasmid 90 MDa, partial sequence Length = 67651 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 cggcggcgagggcaccgaca 390 |||||||||||||||||||| Sbjct: 53179 cggcggcgagggcaccgaca 53198
>gb|AY453841.1| Oryctolagus cuniculus atherin mRNA, complete cds Length = 2560 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 cgcggccgtggtggcggccg 261 |||||||||||||||||||| Sbjct: 305 cgcggccgtggtggcggccg 286
>emb|CR718583.2|CNS0GHEL Tetraodon nigroviridis full-length cDNA Length = 927 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 gcgtccccgacgacgcccacgagc 183 ||||||||||||||| |||||||| Sbjct: 718 gcgtccccgacgacgaccacgagc 741
>emb|CR706595.2|CNS0G85R Tetraodon nigroviridis full-length cDNA Length = 926 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 gcgtccccgacgacgcccacgagc 183 ||||||||||||||| |||||||| Sbjct: 718 gcgtccccgacgacgaccacgagc 741
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 tcgcctccggcgtcacccgc 143 |||||||||||||||||||| Sbjct: 1432015 tcgcctccggcgtcacccgc 1431996
>emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome; segment 6/13 Length = 347496 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 331 ccgcggcggtggaggccgcccggg 354 |||| ||||||||||||||||||| Sbjct: 211535 ccgcagcggtggaggccgcccggg 211558
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 cgccaccttcgccggcgtgc 114 |||||||||||||||||||| Sbjct: 150087 cgccaccttcgccggcgtgc 150106
>emb|BX569693.1| Synechococcus sp. WH8102 complete genome; segment 5/7 Length = 349213 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 gccggcaggaacctgcggccgtcc 216 |||||||||||| ||||||||||| Sbjct: 153250 gccggcaggaacttgcggccgtcc 153227
>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 7/14 Length = 291050 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 331 ccgcggcggtggaggccgcccggg 354 |||| ||||||||||||||||||| Sbjct: 14133 ccgcagcggtggaggccgcccggg 14156
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 331 ccgcggcggtggaggccgcccggg 354 ||||||||| |||||||||||||| Sbjct: 56631 ccgcggcggaggaggccgcccggg 56654
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 ggaacctgcggccgtcccgg 219 |||||||||||||||||||| Sbjct: 132243 ggaacctgcggccgtcccgg 132262
>emb|AJ238118.2|RLE238118 Rhizobium leguminosarum aldA gene for alanine dehydrogenase and aldR gene for leucine-responsive regulator Length = 2780 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 ggcctcgtcgcctccggcgtcacc 140 |||||| ||||||||||||||||| Sbjct: 1454 ggcctcatcgcctccggcgtcacc 1431
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 332 cgcggcggtggaggccgcccgggc 355 |||||||||||| ||||||||||| Sbjct: 2735539 cgcggcggtggaagccgcccgggc 2735516
>gb|AF283714.1| Streptomyces hygroscopicus putative 1-deoxy-D-xylulose 5-phosphate synthase (dxsC) gene, partial cds Length = 645 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 cgcggcggtggaggccgccc 351 |||||||||||||||||||| Sbjct: 309 cgcggcggtggaggccgccc 328
>gb|AY681231.1| Gelasinospora cratophora beta-tubulin gene, partial sequence Length = 492 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 106 ccggcgtgcacggcctcgtcgcctccgg 133 |||||| ||||||||||| ||||||||| Sbjct: 103 ccggcgagcacggcctcgacgcctccgg 130
>gb|AY681229.1| Sordaria tomento-alba beta-tubulin gene, partial sequence Length = 496 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 106 ccggcgtgcacggcctcgtcgcctccgg 133 |||||| ||||||||||| ||||||||| Sbjct: 104 ccggcgagcacggcctcgacgcctccgg 131
>gb|AY681227.1| Neurospora tetrasperma beta-tubulin gene, partial sequence Length = 499 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 106 ccggcgtgcacggcctcgtcgcctccgg 133 |||||| ||||||||||| ||||||||| Sbjct: 107 ccggcgagcacggcctcgacgcctccgg 134
>gb|AY681226.1| Neurospora crassa beta-tubulin gene, partial sequence Length = 499 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 106 ccggcgtgcacggcctcgtcgcctccgg 133 |||||| ||||||||||| ||||||||| Sbjct: 107 ccggcgagcacggcctcgacgcctccgg 134
>gb|AY681225.1| Gelasinospora endodonta beta-tubulin gene, partial sequence Length = 489 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 106 ccggcgtgcacggcctcgtcgcctccgg 133 |||||| ||||||||||| ||||||||| Sbjct: 100 ccggcgagcacggcctcgacgcctccgg 127
>gb|AY681223.1| Neurospora calospora beta-tubulin gene, partial sequence Length = 489 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 106 ccggcgtgcacggcctcgtcgcctccgg 133 |||||| ||||||||||| ||||||||| Sbjct: 100 ccggcgagcacggcctcgacgcctccgg 127
>gb|AY681222.1| Neurospora cerealis beta-tubulin gene, partial sequence Length = 492 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 106 ccggcgtgcacggcctcgtcgcctccgg 133 |||||| ||||||||||| ||||||||| Sbjct: 103 ccggcgagcacggcctcgacgcctccgg 130
>gb|AY681221.1| Gelasinospora seminuda beta-tubulin gene, partial sequence Length = 493 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 106 ccggcgtgcacggcctcgtcgcctccgg 133 |||||| ||||||||||| ||||||||| Sbjct: 103 ccggcgagcacggcctcgacgcctccgg 130
>gb|AY681219.1| Gelasinospora saitoi beta-tubulin gene, partial sequence Length = 492 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 106 ccggcgtgcacggcctcgtcgcctccgg 133 |||||| ||||||||||| ||||||||| Sbjct: 103 ccggcgagcacggcctcgacgcctccgg 130
>gb|AY681217.1| Neurospora intermedia beta-tubulin gene, partial sequence Length = 499 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 106 ccggcgtgcacggcctcgtcgcctccgg 133 |||||| ||||||||||| ||||||||| Sbjct: 107 ccggcgagcacggcctcgacgcctccgg 134
>gb|AY681215.1| Neurospora dictyophora beta-tubulin gene, partial sequence Length = 492 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 106 ccggcgtgcacggcctcgtcgcctccgg 133 |||||| ||||||||||| ||||||||| Sbjct: 103 ccggcgagcacggcctcgacgcctccgg 130
>gb|AY681213.1| Asordaria conoidea beta-tubulin gene, partial sequence Length = 496 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 106 ccggcgtgcacggcctcgtcgcctccgg 133 |||||| ||||||||||| ||||||||| Sbjct: 103 ccggcgagcacggcctcgacgcctccgg 130
>gb|AY681208.1| Asordaria prolifica beta-tubulin gene, partial sequence Length = 494 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 106 ccggcgtgcacggcctcgtcgcctccgg 133 |||||| ||||||||||| ||||||||| Sbjct: 101 ccggcgagcacggcctcgacgcctccgg 128
>dbj|AB166745.1| Homo sapiens TRPM2 mRNA for transient receptor potential cation channel, subfamily M, member 2, long form, complete cds Length = 5988 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ccggcgtcacccgcgtcccc 149 |||||||||||||||||||| Sbjct: 92 ccggcgtcacccgcgtcccc 73
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 acgagcccaccggcggccgg 197 |||||||||||||||||||| Sbjct: 5663266 acgagcccaccggcggccgg 5663247
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 ccggcggcgagggcaccgac 389 |||||||||||||||||||| Sbjct: 3418864 ccggcggcgagggcaccgac 3418883 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 ccgcggcggtggaggccgcc 350 |||||||||||||||||||| Sbjct: 3357791 ccgcggcggtggaggccgcc 3357810 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 66 gaccgcgcggccgagctccgcgcgctgg 93 |||||||||| |||| |||||||||||| Sbjct: 2715225 gaccgcgcgggcgaggtccgcgcgctgg 2715198
>ref|XM_215445.3| PREDICTED: Rattus norvegicus orthopedia homolog (Drosophila) (Otp), mRNA Length = 2575 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cccaccggcggccggcagga 202 |||||||||||||||||||| Sbjct: 2245 cccaccggcggccggcagga 2226
>gb|AF235504.1|AF235504 Streptomyces hygroscopicus var. ascomyceticus FK520 biosynthetic gene cluster, partial sequence Length = 77534 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 227 cctcggcggggaccgcgcggccgt 250 ||||||||||||||||||| |||| Sbjct: 54648 cctcggcggggaccgcgcgcccgt 54671
>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0060O17 Length = 180015 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 ctcgtcgcctccggcgtcacccgc 143 |||| ||||||||||||||||||| Sbjct: 83886 ctcgccgcctccggcgtcacccgc 83863
>dbj|AP003202.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1075D06 Length = 130528 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 249 gtggtggcggccgtggggcgcgccgcggccga 280 ||||||||||||||| || |||||||||||| Sbjct: 35251 gtggtggcggccgtgaggaacgccgcggccga 35220
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 239 ccgcgcggccgtggtggcggccgtgggg 266 ||||| ||||| |||||||||||||||| Sbjct: 503245 ccgcgtggccgaggtggcggccgtgggg 503218
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 cggcgagggcaccgacaagg 393 |||||||||||||||||||| Sbjct: 5491822 cggcgagggcaccgacaagg 5491803
>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A11 Length = 132352 Score = 40.1 bits (20), Expect = 6.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 273 gcggccgagtgggggttcttccaggtgacgggccacggcgtgcc 316 ||||| ||||||||| ||||||||||| | |||||||||||| Sbjct: 106245 gcggcggagtgggggctcttccaggtggtgaaccacggcgtgcc 106202
>emb|Z22577.1|SAGLCTRAA S.antibioticus membrane protein, lipoprotein, and glycosyltransferase genes Length = 3389 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 229 tcggcggggaccgcgcggccgtgg 252 |||||||||||||||||| ||||| Sbjct: 361 tcggcggggaccgcgcgggcgtgg 338
>dbj|AK119316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-H05, full insert sequence Length = 2536 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 249 gtggtggcggccgtggggcgcgccgcggccga 280 ||||||||||||||| || |||||||||||| Sbjct: 599 gtggtggcggccgtgaggaacgccgcggccga 568
>dbj|AK107142.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-D04, full insert sequence Length = 1421 Score = 40.1 bits (20), Expect = 6.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 279 gagtgggggttcttccaggtgacgggccacggcgtg 314 |||||||||||||||||| |||| |||||||||| Sbjct: 371 gagtgggggttcttccagctgaccaaccacggcgtg 406
>dbj|AK072697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136E04, full insert sequence Length = 1222 Score = 40.1 bits (20), Expect = 6.2 Identities = 38/44 (86%) Strand = Plus / Plus Query: 273 gcggccgagtgggggttcttccaggtgacgggccacggcgtgcc 316 ||||| ||||||||| ||||||||||| | |||||||||||| Sbjct: 266 gcggcggagtgggggctcttccaggtggtgaaccacggcgtgcc 309
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 cgcggcggtggaggccgcccgggc 355 |||||||||||| ||||||||||| Sbjct: 3009472 cgcggcggtggaagccgcccgggc 3009495
>dbj|AP001754.1| Homo sapiens genomic DNA, chromosome 21q, section 98/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ccggcgtcacccgcgtcccc 149 |||||||||||||||||||| Sbjct: 65875 ccggcgtcacccgcgtcccc 65856
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 69 cgcgcggccgagctccgcgcgctggacg 96 |||||| |||||||||||||||| |||| Sbjct: 1655879 cgcgcgcccgagctccgcgcgctcgacg 1655906 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 cggccgagctccgcgcgctg 92 |||||||||||||||||||| Sbjct: 1437695 cggccgagctccgcgcgctg 1437676
>gb|DQ306260.1| Rhodococcus sp. T104 p-cumate-degrading gene cluster, complete sequence Length = 42397 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 374 cggcgagggcaccgacaaggcgcg 397 |||||||||| ||||||||||||| Sbjct: 9942 cggcgagggcgccgacaaggcgcg 9919
>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence Length = 163039 Score = 40.1 bits (20), Expect = 6.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 279 gagtgggggttcttccaggtgacgggccacggcgtg 314 |||||||||||||||||| |||| |||||||||| Sbjct: 141756 gagtgggggttcttccagctgaccaaccacggcgtg 141721
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 239 ccgcgcggccgtggtggcggccgtgggg 266 ||||| ||||| |||||||||||||||| Sbjct: 153733 ccgcgtggccgaggtggcggccgtgggg 153706
>dbj|AP001063.1| Homo sapiens genomic DNA, chromosome 21, clone:D99F9, MX1-D21S171 region, complete sequence Length = 45311 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ccggcgtcacccgcgtcccc 149 |||||||||||||||||||| Sbjct: 9625 ccggcgtcacccgcgtcccc 9606 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,571,716 Number of Sequences: 3902068 Number of extensions: 2571716 Number of successful extensions: 62053 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 107 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58517 Number of HSP's gapped (non-prelim): 3534 length of query: 462 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 440 effective length of database: 17,147,199,772 effective search space: 7544767899680 effective search space used: 7544767899680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
