ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart60h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185693.1| Oryza sativa (japonica cultivar-group), Ozsa804... 72 1e-09
2ref|XM_476310.1| Oryza sativa (japonica cultivar-group), predic... 72 1e-09
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
4dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
5dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
6ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa804... 50 0.004
7ref|XM_476309.1| Oryza sativa (japonica cultivar-group), predic... 50 0.004
8ref|XM_476311.1| Oryza sativa (japonica cultivar-group), predic... 46 0.055
9dbj|AK102979.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.055
10gb|AY119663.1| Drosophila melanogaster SD07726 full insert cDNA 42 0.86
11ref|NM_175954.1| Drosophila melanogaster CG33123-PA (CG33123) mR... 42 0.86
12gb|AC009751.6|AC009751 Drosophila melanogaster, chromosome 2L, r... 42 0.86
13gb|AC008323.3|AC008323 Drosophila melanogaster, chromosome 2L, r... 42 0.86
14gb|AE003579.3| Drosophila melanogaster chromosome 2L, section 12... 42 0.86
15ref|XM_426275.1| PREDICTED: Gallus gallus similar to Gab3 protei... 40 3.4
16gb|AC171012.3| Gallus gallus BAC clone CH261-128I7 from chromoso... 40 3.4
17emb|AJ291316.1|OCU291316 Oryctolagus cuniculus partial mRNA for ... 40 3.4
18dbj|AP000886.3| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 40 3.4
19dbj|AP003699.1| Homo sapiens genomic DNA, chromosome 6q25, clone... 40 3.4 
>ref|NM_185693.1| Oryza sativa (japonica cultivar-group), Ozsa8044 predicted mRNA
          Length = 1059

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                               
Query: 107 ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 158
           |||||| ||||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 126 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 177
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>ref|XM_476310.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 942

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                               
Query: 107 ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 158
           |||||| ||||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 126 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 177
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                   
Query: 107     ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 158
               |||||| ||||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 3907430 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 3907481



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                   
Query: 107     ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 158
               |||||| ||||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 3857551 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 3857602



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                           
Query: 21      gtgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttccggag 80
               |||||||||||||  |  ||||||||  ||||||||||||| | ||||||||||  ||||
Sbjct: 3904520 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttggggag 3904579

                        
Query: 81      caagaccgt 89
                ||||||||
Sbjct: 3904580 aaagaccgt 3904588



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                           
Query: 21      gtgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttccggag 80
               |||||||||||||  |  ||||||||  ||||||||||||| | ||||||||||  ||||
Sbjct: 3892697 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttggggag 3892756

                        
Query: 81      caagaccgt 89
                ||||||||
Sbjct: 3892757 aaagaccgt 3892765



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                           
Query: 21      gtgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttccggag 80
               |||||||||||||  |  ||||||||  ||||||||||||| | ||||||||||  ||||
Sbjct: 3854641 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttggggag 3854700

                        
Query: 81      caagaccgt 89
                ||||||||
Sbjct: 3854701 aaagaccgt 3854709



 Score = 46.1 bits (23), Expect = 0.055
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 38      cgccggcgtgaaggagccaccgagccagtac 68
               |||||||||| ||||||||||||||| ||||
Sbjct: 3911444 cgccggcgtgcaggagccaccgagccggtac 3911474



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                             
Query: 109     ccgagatgcccgagcccatccccatcatcgacctcagccggctgtc 154
               ||||||| || ||||||||||| | |||||| ||| ||||||||||
Sbjct: 3911512 ccgagataccggagcccatcccgaccatcgatctcggccggctgtc 3911557
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>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0035I03
          Length = 153749

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 107   ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 158
             |||||| ||||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 13306 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 13357



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                         
Query: 21    gtgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttccggag 80
             |||||||||||||  |  ||||||||  ||||||||||||| | ||||||||||  ||||
Sbjct: 10396 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttggggag 10455

                      
Query: 81    caagaccgt 89
              ||||||||
Sbjct: 10456 aaagaccgt 10464



 Score = 46.1 bits (23), Expect = 0.055
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 38    cgccggcgtgaaggagccaccgagccagtac 68
             |||||||||| ||||||||||||||| ||||
Sbjct: 17320 cgccggcgtgcaggagccaccgagccggtac 17350



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 109   ccgagatgcccgagcccatccccatcatcgacctcagccggctgtc 154
             ||||||| || ||||||||||| | |||||| ||| ||||||||||
Sbjct: 17388 ccgagataccggagcccatcccgaccatcgatctcggccggctgtc 17433
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>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0015E04
          Length = 152046

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                  
Query: 107    ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 158
              |||||| ||||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 115505 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 115556



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                          
Query: 21     gtgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttccggag 80
              |||||||||||||  |  ||||||||  ||||||||||||| | ||||||||||  ||||
Sbjct: 150651 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttggggag 150710

                       
Query: 81     caagaccgt 89
               ||||||||
Sbjct: 150711 aaagaccgt 150719



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                          
Query: 21     gtgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttccggag 80
              |||||||||||||  |  ||||||||  ||||||||||||| | ||||||||||  ||||
Sbjct: 112595 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttggggag 112654

                       
Query: 81     caagaccgt 89
               ||||||||
Sbjct: 112655 aaagaccgt 112663
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>ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa8043 predicted mRNA
          Length = 1164

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                       
Query: 21  gtgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttccggag 80
           |||||||||||||  |  ||||||||  ||||||||||||| | ||||||||||  ||||
Sbjct: 34  gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttggggag 93

                    
Query: 81  caagaccgt 89
            ||||||||
Sbjct: 94  aaagaccgt 102
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>ref|XM_476309.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1053

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                       
Query: 21  gtgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttccggag 80
           |||||||||||||  |  ||||||||  ||||||||||||| | ||||||||||  ||||
Sbjct: 34  gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttggggag 93

                    
Query: 81  caagaccgt 89
            ||||||||
Sbjct: 94  aaagaccgt 102
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>ref|XM_476311.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1065

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 38 cgccggcgtgaaggagccaccgagccagtac 68
          |||||||||| ||||||||||||||| ||||
Sbjct: 48 cgccggcgtgcaggagccaccgagccggtac 78



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 109 ccgagatgcccgagcccatccccatcatcgacctcagccggctgtc 154
           ||||||| || ||||||||||| | |||||| ||| ||||||||||
Sbjct: 116 ccgagataccggagcccatcccgaccatcgatctcggccggctgtc 161
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>dbj|AK102979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115N23, full
           insert sequence
          Length = 1303

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 38  cgccggcgtgaaggagccaccgagccagtac 68
           |||||||||| ||||||||||||||| ||||
Sbjct: 143 cgccggcgtgcaggagccaccgagccggtac 173



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 109 ccgagatgcccgagcccatccccatcatcgacctcagccggctgtc 154
           ||||||| || ||||||||||| | |||||| ||| ||||||||||
Sbjct: 211 ccgagataccggagcccatcccgaccatcgatctcggccggctgtc 256
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>gb|AY119663.1| Drosophila melanogaster SD07726 full insert cDNA
          Length = 3809

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 119  cgagcccatccccatcatcga 139
            |||||||||||||||||||||
Sbjct: 1397 cgagcccatccccatcatcga 1417
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>ref|NM_175954.1| Drosophila melanogaster CG33123-PA (CG33123) mRNA, complete cds
          Length = 3791

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 119  cgagcccatccccatcatcga 139
            |||||||||||||||||||||
Sbjct: 1408 cgagcccatccccatcatcga 1428
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>gb|AC009751.6|AC009751 Drosophila melanogaster, chromosome 2L, region 23F-24A, BAC clone
              BACR26A07, complete sequence
          Length = 172436

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 119    cgagcccatccccatcatcga 139
              |||||||||||||||||||||
Sbjct: 170384 cgagcccatccccatcatcga 170364
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>gb|AC008323.3|AC008323 Drosophila melanogaster, chromosome 2L, region 24D-24D, BAC clone
             BACR03G07, complete sequence
          Length = 170064

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 119   cgagcccatccccatcatcga 139
             |||||||||||||||||||||
Sbjct: 58306 cgagcccatccccatcatcga 58286
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>gb|AE003579.3| Drosophila melanogaster chromosome 2L, section 12 of 83 of the complete
             sequence
          Length = 304674

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 119   cgagcccatccccatcatcga 139
             |||||||||||||||||||||
Sbjct: 81523 cgagcccatccccatcatcga 81503
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>ref|XM_426275.1| PREDICTED: Gallus gallus similar to Gab3 protein; DOS/Gab family
            member 3 (LOC428717), mRNA
          Length = 2973

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 121  agcccatccccatcatcgacctca 144
            ||||||||| ||||||||||||||
Sbjct: 1376 agcccatccgcatcatcgacctca 1399
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>gb|AC171012.3| Gallus gallus BAC clone CH261-128I7 from chromosome ul, complete
             sequence
          Length = 231142

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 121   agcccatccccatcatcgacctca 144
             ||||||||| ||||||||||||||
Sbjct: 67835 agcccatccgcatcatcgacctca 67858
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>emb|AJ291316.1|OCU291316 Oryctolagus cuniculus partial mRNA for KvLQT1 voltage-gated delayed
           rectifier potassium channel (kvLQT1 gene)
          Length = 463

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 121 agcccatccccatcatcgacctca 144
           |||||||| |||||||||||||||
Sbjct: 134 agcccatctccatcatcgacctca 157
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>dbj|AP000886.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1750A9
          Length = 220495

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    cctagctttcttgccgaggc 259
              ||||||||||||||||||||
Sbjct: 193802 cctagctttcttgccgaggc 193783
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>dbj|AP003699.1| Homo sapiens genomic DNA, chromosome 6q25, clone: KB761D4, complete
             sequence
          Length = 110025

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   cctagctttcttgccgaggc 259
             ||||||||||||||||||||
Sbjct: 21436 cctagctttcttgccgaggc 21417


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,458,888
Number of Sequences: 3902068
Number of extensions: 1458888
Number of successful extensions: 24882
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24817
Number of HSP's gapped (non-prelim): 65
length of query: 261
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 239
effective length of database: 17,147,199,772
effective search space: 4098180745508
effective search space used: 4098180745508
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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