ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart60h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1EXOS8_MOUSE (Q9D753) Exosome complex exonuclease RRP43 (EC 3.1.1... 77 2e-14
2EXOS8_HUMAN (Q96B26) Exosome complex exonuclease RRP43 (EC 3.1.1... 74 1e-13
3ECX2_METKA (Q8TYC2) Probable exosome complex exonuclease 2 (EC 3... 61 1e-09
4ECX2_SULTO (Q975G9) Probable exosome complex exonuclease 2 (EC 3... 61 1e-09
5ECX2_SULSO (Q9UXC0) Probable exosome complex exonuclease 2 (EC 3... 59 6e-09
6ECX2_PYRKO (Q5JIR7) Probable exosome complex exonuclease 2 (EC 3... 51 2e-06
7ECX2_PYRFU (Q8U0M0) Probable exosome complex exonuclease 2 (EC 3... 50 2e-06
8ECX2_PYRAB (Q9V118) Probable exosome complex exonuclease 2 (EC 3... 50 3e-06
9ECX2_ARCFU (O29756) Probable exosome complex exonuclease 2 (EC 3... 50 3e-06
10ECX2_AERPE (Q9YC05) Probable exosome complex exonuclease 2 (EC 3... 50 3e-06
11ECX2_PYRHO (O59224) Probable exosome complex exonuclease 2 (EC 3... 49 4e-06
12EXOS7_HUMAN (Q15024) Exosome complex exonuclease RRP42 (EC 3.1.1... 48 1e-05
13EXOS7_MOUSE (Q9D0M0) Exosome complex exonuclease RRP42 (EC 3.1.1... 45 8e-05
14ECX2_THEAC (Q9HIP1) Probable exosome complex exonuclease 2 (EC 3... 45 8e-05
15ECX2_THEVO (Q97BZ4) Probable exosome complex exonuclease 2 (EC 3... 45 1e-04
16ECX2_METTH (O26778) Probable exosome complex exonuclease 2 (EC 3... 45 1e-04
17ECX2_PYRAE (Q8ZVN0) Probable exosome complex exonuclease 2 (EC 3... 44 2e-04
18RNPH_BRAJA (Q89WK4) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 42 5e-04
19ECX1_SULAC (Q4JB27) Probable exosome complex exonuclease 1 (EC 3... 42 0.001
20ECX2_METMA (Q8PTT7) Probable exosome complex exonuclease 2 (EC 3... 39 0.005
21RNPH_RHOPA (Q6NCY8) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 38 0.010
22ECX2_METAC (Q8TGX5) Probable exosome complex exonuclease 2 (EC 3... 37 0.023
23ECX1_SULTO (Q975G8) Probable exosome complex exonuclease 1 (EC 3... 37 0.030
24RNPH_PHOPR (Q6LVN8) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 36 0.039
25RNPH_BORPA (Q7W6C1) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 36 0.050
26PNP_BUCBP (Q89AF8) Polyribonucleotide nucleotidyltransferase (EC... 35 0.086
27ECX1_AERPE (Q9YC03) Probable exosome complex exonuclease 1 (EC 3... 35 0.086
28RNPH_RICPR (Q9ZCT5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 35 0.086
29RNPH_RICCN (Q92GZ7) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 35 0.086
30RNPH_AGRT5 (Q8UIG8) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 35 0.086
31RNPH_BACHD (Q9K8D8) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 35 0.11
32RNPH_RHILO (Q98DN6) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 35 0.11
33RNPH_SALTY (P0A2C3) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 34 0.15
34RNPH_SALTI (P0A2C4) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 34 0.15
35RNPH_PHOLL (Q7MAX2) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 34 0.15
36RNPH_BACSU (P28619) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 34 0.15
37PNP_RICPR (Q9ZD43) Polyribonucleotide nucleotidyltransferase (EC... 34 0.15
38RNPH_CLOPE (Q8XI67) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 34 0.15
39PNP_BACSU (P50849) Polyribonucleotide nucleotidyltransferase (EC... 34 0.19
40RNPH_IDILO (Q5QYL5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 33 0.25
41RNPH_SHIFL (Q83PN2) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 33 0.25
42RNPH_ECOLI (P03842) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 33 0.25
43RNPH_ECOL6 (P66679) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 33 0.25
44RNPH_ECO57 (P66680) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 33 0.25
45RNPH_BRUSU (Q8G2Y5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 33 0.25
46RNPH_BRUME (Q8YEV2) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 33 0.25
47ECX1_SULSO (Q9UXC2) Probable exosome complex exonuclease 1 (EC 3... 33 0.33
48RNPH_YERPS (Q66GE1) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 33 0.43
49RNPH_YERPE (Q8ZJP8) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 33 0.43
50RNPH_METCA (Q602N9) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 32 0.56
51RNPH_ZYMMO (Q5NRL6) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 32 0.56
52RNPH_RHIME (Q92SK2) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 32 0.56
53RNPH_MANSM (Q65W01) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 32 0.56
54RNPH_GEOSL (Q74C79) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 32 0.56
55RNPH_ERWCT (Q6DAW2) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 32 0.56
56RNPH_THETN (Q8RC30) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 32 0.56
57RNPH_SHEON (Q8E9L4) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 32 0.73
58RNPH_BORPE (Q7VXY3) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 32 0.73
59RNPH_BORBR (Q7WI90) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 32 0.73
60RNPH_VIBPA (Q87T93) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 32 0.73
61RNPH_VIBCH (Q9KVD6) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 32 0.73
62RNPH_RALSO (Q8XXF5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 32 0.73
63RNPH_DESPS (Q6ANS2) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 32 0.95
64RNPH_XANCP (Q8P5T5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 32 0.95
65RNPH_XANAC (Q8PH63) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 32 0.95
66RNPH_GEOKA (Q5KWI5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 31 1.2
67RNPH_PSEAE (P50597) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 31 1.2
68RNPH_OCEIH (Q8EPJ5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 31 1.2
69RNPH_LEIXX (Q6AEK9) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 31 1.2
70EXOS4_HUMAN (Q9NPD3) Exosome complex exonuclease RRP41 (EC 3.1.1... 31 1.2
71RNPH_PASMU (Q9CJW5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 31 1.2
72RRP41_SCHPO (O42872) Putative exosome complex exonuclease RRP41 ... 31 1.2
73RNPH_STRCO (Q9S2H7) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 31 1.2
74RNPH_BACHK (Q6HD42) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 31 1.2
75RNPH_BACCZ (Q633V4) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 31 1.2
76RNPH_BACCR (Q817P3) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 31 1.2
77RNPH_BACC1 (Q72ZT1) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 31 1.2
78RNPH_BACAN (Q81LA9) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 31 1.2
79EXOS4_MOUSE (Q921I9) Exosome complex exonuclease RRP41 (EC 3.1.1... 31 1.6
80RNPH_VIBVY (Q7MPT3) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 31 1.6
81RNPH_VIBVU (Q8DDX4) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 31 1.6
82PNP_BUCAI (P57454) Polyribonucleotide nucleotidyltransferase (EC... 31 1.6
83P100_HCMVA (P08318) Large structural phosphoprotein (pp150) (150... 31 1.6
84EFG_THIDA (Q3SLQ2) Elongation factor G (EF-G) 30 2.1
85RNPH_BACSK (Q5WEM3) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 30 2.1
86PATR_MYCTU (P72039) Putative phenylalanine aminotransferase (EC ... 30 2.1
87PATR_MYCBO (Q7TVQ0) Putative phenylalanine aminotransferase (EC ... 30 2.1
88SLN1_YEAST (P39928) Osmolarity two-component system protein SLN1... 30 2.8
89PNPT1_PONPY (Q5RCW2) Polyribonucleotide nucleotidyltransferase 1... 30 3.6
90PNPT1_HUMAN (Q8TCS8) Polyribonucleotide nucleotidyltransferase 1... 30 3.6
91PNP_PSEPU (O87792) Polyribonucleotide nucleotidyltransferase (EC... 30 3.6
92RNPH_HAEDU (Q7VP10) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 30 3.6
93RNPH_PSESM (Q88BE0) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 30 3.6
94MRAW_XANC5 (Q3BXF9) S-adenosyl-methyltransferase mraW (EC 2.1.1.-) 30 3.6
95RNPH_BURPS (Q63RV5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 29 4.7
96RNPH_BURMA (Q62HZ8) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 29 4.7
97RNPH_SYMTH (Q67SL5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 29 4.7
98PNPT1_MOUSE (Q8K1R3) Polyribonucleotide nucleotidyltransferase 1... 29 4.7
99COFE_MYCPA (Q73UJ3) F420-0:gamma-glutamyl ligase (EC 6.3.2.-) 29 4.7
100RNPH_XYLFT (Q87DG3) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 29 4.7
101RNPH_XYLFA (Q9PD74) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 29 4.7
102RNPH_TROWT (Q83FT1) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 29 4.7
103RNPH_TROW8 (Q83HF6) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 29 4.7
104RNPH_LEGPN (Q9X528) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 29 4.7
105RNPH_LEGPL (Q5WV28) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 29 4.7
106RNPH_LEGPH (Q5ZTZ6) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 29 4.7
107RNPH_LEGPA (Q5X3P0) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 29 4.7
108EPHA3_BRARE (O13146) Ephrin type-A receptor 3 precursor (EC 2.7.... 29 6.2
109PROB_PSESM (Q889F0) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glut... 29 6.2
110RNPH_PSEPK (Q88C89) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 29 6.2
111PROB_PSEF5 (Q4K5T9) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glut... 29 6.2
112PNP_YEREN (O34275) Polyribonucleotide nucleotidyltransferase (EC... 28 8.1
113TAL_AGRT5 (Q8U7I5) Transaldolase (EC 2.2.1.2) 28 8.1
114RNPH_HAEIN (P44444) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 28 8.1
115PNP_BUCAP (Q8K9H5) Polyribonucleotide nucleotidyltransferase (EC... 28 8.1
116RNPH_BIFLO (Q8G7I0) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 28 8.1 
>EXOS8_MOUSE (Q9D753) Exosome complex exonuclease RRP43 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 43) (Exosome component 8)
          Length = 276

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 35/79 (44%), Positives = 53/79 (67%)
 Frame = +3

Query: 189 YRRLFPLAFLERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKL 368
           ++ + PL +  R L+E+ RPD R L E R TTV +G++S+A GSALV+LG+T ++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 369 EVMSPPAETPDQGSVAVGV 425
           E  +PP + PD+G V   V
Sbjct: 65  EFAAPPVDAPDRGYVVPNV 83
to top
>EXOS8_HUMAN (Q96B26) Exosome complex exonuclease RRP43 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 43) (Exosome component 8) (p9)
           (Opa-interacting protein 2)
          Length = 276

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 34/79 (43%), Positives = 52/79 (65%)
 Frame = +3

Query: 189 YRRLFPLAFLERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKL 368
           ++ + PL +  R L+E+ RPD R L E R TTV +G++S+A GSALV+LG+T ++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 369 EVMSPPAETPDQGSVAVGV 425
           E  +P  + PD+G V   V
Sbjct: 65  EFAAPSTDAPDKGYVVPNV 83
to top
>ECX2_METKA (Q8TYC2) Probable exosome complex exonuclease 2 (EC 3.1.13.-)|
          Length = 267

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
 Frame = +3

Query: 207 LAFLERH-----LRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLE 371
           LA ++RH     +R   R D R   E RP  V  G +S A+GSALVRLG+T ++  +KLE
Sbjct: 6   LARIKRHEVLAAIRAGERIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLE 65

Query: 372 VMSPPAETPDQGSVAV 419
           V  P  ++P++G++AV
Sbjct: 66  VGRPYPDSPNEGALAV 81
to top
>ECX2_SULTO (Q975G9) Probable exosome complex exonuclease 2 (EC 3.1.13.-)|
          Length = 275

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 30/66 (45%), Positives = 42/66 (63%)
 Frame = +3

Query: 228 LRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAETPDQG 407
           L   +R D R+ ++ RP +V L     A GSALV+LGDT +LA +KLE   P  +TP+QG
Sbjct: 23  LERGIRLDGRKNSDYRPISVTLNYAKKAEGSALVKLGDTMVLAGVKLEEEEPFPDTPNQG 82

Query: 408 SVAVGV 425
           ++ V V
Sbjct: 83  NLVVNV 88
to top
>ECX2_SULSO (Q9UXC0) Probable exosome complex exonuclease 2 (EC 3.1.13.-)|
          Length = 275

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 28/64 (43%), Positives = 41/64 (64%)
 Frame = +3

Query: 234 ESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAETPDQGSV 413
           + +R D R+L + RP ++ L     A GSALV+LG T +LA  KLE+  P  +TP+QG++
Sbjct: 25  KGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNL 84

Query: 414 AVGV 425
            V V
Sbjct: 85  IVNV 88
to top
>ECX2_PYRKO (Q5JIR7) Probable exosome complex exonuclease 2 (EC 3.1.13.-)|
          Length = 272

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 26/66 (39%), Positives = 35/66 (53%)
 Frame = +3

Query: 228 LRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAETPDQG 407
           LRE  R D R   + R   + +  +  A GSA VRLGDT +L  IK E+  P  + PD+G
Sbjct: 19  LREGKRIDGRSFEDYRDLEIKVNVIEKAEGSAWVRLGDTQVLVGIKAELGEPFPDLPDRG 78

Query: 408 SVAVGV 425
            +   V
Sbjct: 79  VITTNV 84
to top
>ECX2_PYRFU (Q8U0M0) Probable exosome complex exonuclease 2 (EC 3.1.13.-)|
          Length = 277

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 26/66 (39%), Positives = 37/66 (56%)
 Frame = +3

Query: 228 LRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAETPDQG 407
           L+E  R D R   + RP  V +G +  A GSALV+LG+T +L  IK  +  P  +TP+ G
Sbjct: 19  LKEKKRIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGIKATLGEPFPDTPNMG 78

Query: 408 SVAVGV 425
            +   V
Sbjct: 79  VMTTNV 84
to top
>ECX2_PYRAB (Q9V118) Probable exosome complex exonuclease 2 (EC 3.1.13.-)|
          Length = 274

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 25/66 (37%), Positives = 36/66 (54%)
 Frame = +3

Query: 228 LRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAETPDQG 407
           L+E  R D R   + RP  + +G +  A GSALV+LG T +L  IK  +  P  +TP+ G
Sbjct: 19  LKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMG 78

Query: 408 SVAVGV 425
            +   V
Sbjct: 79  VMTTNV 84
to top
>ECX2_ARCFU (O29756) Probable exosome complex exonuclease 2 (EC 3.1.13.-)|
          Length = 259

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 24/64 (37%), Positives = 37/64 (57%)
 Frame = +3

Query: 228 LRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAETPDQG 407
           LR++ R D R   E R   +    +  A GSALV+LGDT ++  +K++   P  +TPD+G
Sbjct: 18  LRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPYPDTPDRG 77

Query: 408 SVAV 419
            + V
Sbjct: 78  VIIV 81
to top
>ECX2_AERPE (Q9YC05) Probable exosome complex exonuclease 2 (EC 3.1.13.-)|
          Length = 276

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 26/64 (40%), Positives = 37/64 (57%)
 Frame = +3

Query: 228 LRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAETPDQG 407
           LR+  RP  R L   R   +  G +  A GSALV+LG T ++A +K  V +P  +TP+QG
Sbjct: 23  LRKGWRPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGAPFKDTPNQG 82

Query: 408 SVAV 419
            + V
Sbjct: 83  VLTV 86
to top
>ECX2_PYRHO (O59224) Probable exosome complex exonuclease 2 (EC 3.1.13.-)|
          Length = 274

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 25/66 (37%), Positives = 36/66 (54%)
 Frame = +3

Query: 228 LRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAETPDQG 407
           L+E  R D R   + RP  + +G +  A GSALV+LG T +L  IK  +  P  +TP+ G
Sbjct: 19  LKEGKRIDDRGFEDYRPIEIEVGIIEKAEGSALVKLGSTQVLVGIKTTLGEPFPDTPNMG 78

Query: 408 SVAVGV 425
            +   V
Sbjct: 79  VMTTNV 84
to top
>EXOS7_HUMAN (Q15024) Exosome complex exonuclease RRP42 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 42) (Exosome component 7) (p8)
          Length = 291

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 26/77 (33%), Positives = 41/77 (53%)
 Frame = +3

Query: 213 FLERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAE 392
           ++   ++E +R D R   + R   V    VS+  GSA V+LG T +L  +K E+ +P  E
Sbjct: 13  YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72

Query: 393 TPDQGSVAVGVTCRLSA 443
            P++G +   V C  SA
Sbjct: 73  KPNEGYLEFFVDCSASA 89
to top
>EXOS7_MOUSE (Q9D0M0) Exosome complex exonuclease RRP42 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 42) (Exosome component 7)
          Length = 291

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 25/77 (32%), Positives = 40/77 (51%)
 Frame = +3

Query: 213 FLERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAE 392
           ++   ++E +R D R     R   V    VS+  GSA V+LG T +L  +K E+ +P  E
Sbjct: 13  YIVHGVQEDLRVDGRGCEVYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72

Query: 393 TPDQGSVAVGVTCRLSA 443
            P++G +   V C  +A
Sbjct: 73  KPNEGYLEFFVDCSANA 89
to top
>ECX2_THEAC (Q9HIP1) Probable exosome complex exonuclease 2 (EC 3.1.13.-)|
          Length = 260

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 24/61 (39%), Positives = 34/61 (55%)
 Frame = +3

Query: 243 RPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAETPDQGSVAVG 422
           R D R   E R  T+    +  A+GSA V LG+T ++A +K+E   P  +TPDQG +   
Sbjct: 26  RIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEPFPDTPDQGVLTTN 85

Query: 423 V 425
           V
Sbjct: 86  V 86
to top
>ECX2_THEVO (Q97BZ4) Probable exosome complex exonuclease 2 (EC 3.1.13.-)|
          Length = 260

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 25/61 (40%), Positives = 33/61 (54%)
 Frame = +3

Query: 243 RPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAETPDQGSVAVG 422
           R D R   E R  T+    V  A+GSA V LG T ++A +K+E   P  +TPDQG +   
Sbjct: 26  RIDGRLPDEFREITIIENYVPRANGSAYVALGKTRVVAGVKIEAGEPFPDTPDQGVLTTN 85

Query: 423 V 425
           V
Sbjct: 86  V 86
to top
>ECX2_METTH (O26778) Probable exosome complex exonuclease 2 (EC 3.1.13.-)|
          Length = 271

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 20/57 (35%), Positives = 34/57 (59%)
 Frame = +3

Query: 243 RPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAETPDQGSV 413
           R D R L E R  ++  G +S A GS+ V+LG+T ++  +K ++  P  +TP+ G +
Sbjct: 25  RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVI 81
to top
>ECX2_PYRAE (Q8ZVN0) Probable exosome complex exonuclease 2 (EC 3.1.13.-)|
          Length = 274

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 23/68 (33%), Positives = 37/68 (54%)
 Frame = +3

Query: 216 LERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAET 395
           + R L    R D R   + R   + +G V +A GSA V+LG T ++A +K+ +  P  + 
Sbjct: 20  IRRLLATKYRVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQPFPDA 79

Query: 396 PDQGSVAV 419
           PD+G + V
Sbjct: 80  PDEGVLVV 87
to top
>RNPH_BRAJA (Q89WK4) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 237

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 22/49 (44%), Positives = 27/49 (55%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +RP  R   E RP T+  G V  A GS LV+ GDT +L +  LE   PP
Sbjct: 1   MRPSRRAPDELRPVTLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPP 49
to top
>ECX1_SULAC (Q4JB27) Probable exosome complex exonuclease 1 (EC 3.1.13.-)|
          Length = 243

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +3

Query: 228 LRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASI--KLEVMSPPAETPD 401
           L   +R D R+L E RP  + LG + +A GSA+  +G+T ++A++    E+       PD
Sbjct: 11  LENGLRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPD 70

Query: 402 QGSVAV 419
           + S+ V
Sbjct: 71  KASLRV 76
to top
>ECX2_METMA (Q8PTT7) Probable exosome complex exonuclease 2 (EC 3.1.13.-)|
          Length = 266

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +3

Query: 243 RPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAETPDQGSV 413
           R D R   + R   +    +S A GSA V LG+T +L  +KL+  +P  ++ D+G +
Sbjct: 25  RQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVGVKLQTGTPFPDSQDEGVI 81
to top
>RNPH_RHOPA (Q6NCY8) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 237

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +RP  R   E R  ++  G V  A GS LV+ GDT +L +  LE   PP
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPP 49
to top
>ECX2_METAC (Q8TGX5) Probable exosome complex exonuclease 2 (EC 3.1.13.-)|
          Length = 266

 Score = 37.0 bits (84), Expect = 0.023
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +3

Query: 243 RPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAETPDQGSV 413
           R D R   + R   +    +  A GSA V LG+T +L  +KL+  +P  ++ D+G +
Sbjct: 25  RQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTPFPDSQDEGVI 81
to top
>ECX1_SULTO (Q975G8) Probable exosome complex exonuclease 1 (EC 3.1.13.-)|
          Length = 247

 Score = 36.6 bits (83), Expect = 0.030
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +3

Query: 228 LRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASI 362
           L   +R D R+  E RP  + LG + +A GSA+  +G+T ++A++
Sbjct: 15  LDNGLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAV 59
to top
>RNPH_PHOPR (Q6LVN8) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 36.2 bits (82), Expect = 0.039
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           +RP  R  ++ RP T+     + A GS LV  GDT ++ +  +E   P
Sbjct: 1   MRPSGRSTSQVRPITITRNFTAHAEGSVLVEFGDTKVICTASVEENVP 48
to top
>RNPH_BORPA (Q7W6C1) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 250

 Score = 35.8 bits (81), Expect = 0.050
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +3

Query: 231 RESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           R SVRP  R +   RP ++  G    A GS LVR G+T +L +  +    PP
Sbjct: 11  RPSVRPAGRAVDALRPFSLERGFTRYAEGSVLVRAGNTHVLCTASVLEKVPP 62
to top
>PNP_BUCBP (Q89AF8) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 693

 Score = 35.0 bits (79), Expect = 0.086
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +3

Query: 222 RHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKL 368
           R L+  +R D R   E R   V  G +   HGSAL   G+T  L S+ L
Sbjct: 308 RVLKNRIRIDGRNKDEIRTLDVRTGVLPRVHGSALFTRGETQSLVSVTL 356
to top
>ECX1_AERPE (Q9YC03) Probable exosome complex exonuclease 1 (EC 3.1.13.-)|
          Length = 246

 Score = 35.0 bits (79), Expect = 0.086
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +3

Query: 228 LRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASI 362
           +R+  R D R   + RP  + +G + +A GSALV  G T +LA++
Sbjct: 12  IRDGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAV 56
to top
>RNPH_RICPR (Q9ZCT5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 240

 Score = 35.0 bits (79), Expect = 0.086
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +R   R+  + RP ++ L  + +A GS L+++G+T ++ S   E   PP
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPP 49
to top
>RNPH_RICCN (Q92GZ7) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 239

 Score = 35.0 bits (79), Expect = 0.086
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +R   R+  + RP ++ L  + +A GS L+++G+T ++ S   E   PP
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPP 49
to top
>RNPH_AGRT5 (Q8UIG8) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 35.0 bits (79), Expect = 0.086
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +RP  R+  + R  +        A GS LV+ GDT +L +  LE  +PP
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLVTASLEEKTPP 49
to top
>RNPH_BACHD (Q9K8D8) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 257

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +R D R+  E RP ++ +  +    GS L+ +G+T ++ +  LE   PP
Sbjct: 1   MRMDERKADELRPISIEINYLHHPEGSVLISIGNTKVICTASLEDRVPP 49
to top
>RNPH_RHILO (Q98DN6) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           +RP  R+  E R  +   G    A GS LV+ GDT +L +  LE   P
Sbjct: 1   MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVP 48
to top
>RNPH_SALTY (P0A2C3) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLE 371
           +RP  R   + RP T+       A GS LV  GDT +L +  +E
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE 44
to top
>RNPH_SALTI (P0A2C4) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLE 371
           +RP  R   + RP T+       A GS LV  GDT +L +  +E
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE 44
to top
>RNPH_PHOLL (Q7MAX2) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 242

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLE 371
           +RP  R   + RP T+       A GS LV  GDT +L +  +E
Sbjct: 1   MRPTGRAAEQVRPITITRHYTKHAEGSVLVEFGDTKVLCNASVE 44
to top
>RNPH_BACSU (P28619) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 245

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +R D R+  E RP T  L  +S   GS L+  G+T ++ +  +E   PP
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPP 49
to top
>PNP_RICPR (Q9ZD43) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 745

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 228 LRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLAS 359
           L +++R D R   + R     +G + SAHGSAL   G+T  L S
Sbjct: 311 LEKNIRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVS 354
to top
>RNPH_CLOPE (Q8XI67) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 248

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +R   R+  + RP  +       A GS L+ +GDT +L +  +E   PP
Sbjct: 1   MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPP 49
to top
>PNP_BACSU (P50849) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15)
          Length = 704

 Score = 33.9 bits (76), Expect = 0.19
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 234 ESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLA 356
           E VRPD R + + RP +  +G +   HGS L   G T  L+
Sbjct: 312 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALS 352
to top
>RNPH_IDILO (Q5QYL5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 237

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLE 371
           +RP  R   + RP T+       A GS L+  G+T +L +  +E
Sbjct: 1   MRPSGRTAQQIRPVTITRNFTKHAEGSVLIEFGETKVLCNASVE 44
to top
>RNPH_SHIFL (Q83PN2) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLE 371
           +RP  R   + RP T+       A GS LV  GDT +L +  +E
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE 44
to top
>RNPH_ECOLI (P03842) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLE 371
           +RP  R   + RP T+       A GS LV  GDT +L +  +E
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE 44
to top
>RNPH_ECOL6 (P66679) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLE 371
           +RP  R   + RP T+       A GS LV  GDT +L +  +E
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE 44
to top
>RNPH_ECO57 (P66680) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLE 371
           +RP  R   + RP T+       A GS LV  GDT +L +  +E
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE 44
to top
>RNPH_BRUSU (Q8G2Y5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           +RP  R   E R  +   G    A GS LV+ GDT +L +  LE   P
Sbjct: 1   MRPSKRAADEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVP 48
to top
>RNPH_BRUME (Q8YEV2) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           +RP  R   E R  +   G    A GS LV+ GDT +L +  LE   P
Sbjct: 1   MRPSKRAADEMRTISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVP 48
to top
>ECX1_SULSO (Q9UXC2) Probable exosome complex exonuclease 1 (EC 3.1.13.-)|
          Length = 248

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 228 LRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASI 362
           L +  R D R+  E R   + LG + +A GSA+  +G+T  +A++
Sbjct: 14  LDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV 58
to top
>RNPH_YERPS (Q66GE1) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 32.7 bits (73), Expect = 0.43
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLE 371
           +RP  R   + RP T+       A GS LV  GDT +L +  +E
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVE 44
to top
>RNPH_YERPE (Q8ZJP8) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 32.7 bits (73), Expect = 0.43
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLE 371
           +RP  R   + RP T+       A GS LV  GDT +L +  +E
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVE 44
to top
>RNPH_METCA (Q602N9) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 243

 Score = 32.3 bits (72), Expect = 0.56
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +RP  RR  + R           A GS LV  GDT ++ +  +E   PP
Sbjct: 1   MRPSGRRPDQLRRIAFTCNYTKHAEGSVLVEFGDTRVICTASVEERVPP 49
to top
>RNPH_ZYMMO (Q5NRL6) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 237

 Score = 32.3 bits (72), Expect = 0.56
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           +RP  R   + R  ++  G    A GS L+  GDT +L +  LE   P
Sbjct: 1   MRPSGRTPDQLRSLSIETGFTRHAEGSCLISFGDTRVLVTASLEERLP 48
to top
>RNPH_RHIME (Q92SK2) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 239

 Score = 32.3 bits (72), Expect = 0.56
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           +RP  R+  + R  +        A GS LVR GDT +L +  LE   P
Sbjct: 1   MRPSGRKTDQMRKVSFERSFSKHAEGSCLVRFGDTHVLCTASLEEKVP 48
to top
>RNPH_MANSM (Q65W01) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 240

 Score = 32.3 bits (72), Expect = 0.56
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           +RP+ R + E RP  +       A GS LV  GDT ++ +  +E   P
Sbjct: 1   MRPNNRAVNEPRPIKITRHYTKHAEGSVLVEFGDTKVICTATVEDSVP 48
to top
>RNPH_GEOSL (Q74C79) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 32.3 bits (72), Expect = 0.56
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +R D R  A  R   +    +  A GS LV  GDT +L +  +E   PP
Sbjct: 1   MRSDGRNPASLRNIRITRKYLKHAEGSVLVEFGDTKVLCTASVEESVPP 49
to top
>RNPH_ERWCT (Q6DAW2) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 32.3 bits (72), Expect = 0.56
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLE 371
           +RP  R   + RP T        A GS LV  GDT +L +  +E
Sbjct: 1   MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVE 44
to top
>RNPH_THETN (Q8RC30) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 261

 Score = 32.3 bits (72), Expect = 0.56
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 243 RPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           R D R   E RP  +       A GS L+ +G+T ++ +  +E   PP
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASIEDKVPP 50
to top
>RNPH_SHEON (Q8E9L4) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 237

 Score = 32.0 bits (71), Expect = 0.73
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLAS 359
           +RP  R  A+ RP T+     + A GS LV  G+T +L +
Sbjct: 1   MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCT 40
to top
>RNPH_BORPE (Q7VXY3) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 246

 Score = 32.0 bits (71), Expect = 0.73
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 243 RPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           RP  R +   RP ++  G    A GS LVR G+T +L +  +    PP
Sbjct: 11  RPSGRAVDALRPFSLERGFTRYAEGSVLVRAGNTHVLCTASVLEKVPP 58
to top
>RNPH_BORBR (Q7WI90) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 246

 Score = 32.0 bits (71), Expect = 0.73
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 243 RPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           RP  R +   RP ++  G    A GS LVR G+T +L +  +    PP
Sbjct: 11  RPSGRAVDALRPFSLERGFTRYAEGSVLVRAGNTHVLCTASVLEKVPP 58
to top
>RNPH_VIBPA (Q87T93) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 32.0 bits (71), Expect = 0.73
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           +RP+ R+  + RP  +     + A GS LV  G+T +L +  +E   P
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVP 48
to top
>RNPH_VIBCH (Q9KVD6) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 32.0 bits (71), Expect = 0.73
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLE 371
           +RPD R   + RP  +     + A GS LV  G+T +L +  +E
Sbjct: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIE 44
to top
>RNPH_RALSO (Q8XXF5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 32.0 bits (71), Expect = 0.73
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +RP  R+  + RP T+       A GS LV  GDT +L +  +    PP
Sbjct: 1   MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPP 49
to top
>RNPH_DESPS (Q6ANS2) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 236

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +R + R     RP ++  G    A  S L+R+G+T ++  + +E   PP
Sbjct: 3   MRQNNRTAESLRPISIERGVQLHADASVLIRMGNTHVICGVSVEESVPP 51
to top
>RNPH_XANCP (Q8P5T5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 241

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 243 RPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           RP  R   + RP  +       A GS LV  GDT +L +  +E   P
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVP 51
to top
>RNPH_XANAC (Q8PH63) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 241

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 243 RPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           RP  R   + RP  +       A GS LV  GDT +L +  +E   P
Sbjct: 5   RPSGRTADQLRPVRIERSFTRHAEGSVLVSFGDTRVLCTASVENRVP 51
to top
>RNPH_GEOKA (Q5KWI5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 256

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           +R D R   E RP  +    +  A GS L+ +GDT ++ +  +E   P
Sbjct: 1   MRADGRSSCELRPVHIHPHYMKHAEGSVLIEVGDTKVICTATVEEKVP 48
to top
>RNPH_PSEAE (P50597) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 239

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 243 RPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLE 371
           RP  R   + RP  +       A GS LV  GDT ++ ++  E
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAE 45
to top
>RNPH_OCEIH (Q8EPJ5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 244

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +R D R + + R   +    +S   GS L+ +G+T ++ +  +E   PP
Sbjct: 1   MRNDQREVNQLRNINITTNYISHPEGSVLIEMGNTKVICNASIEDRVPP 49
to top
>RNPH_LEIXX (Q6AEK9) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 251

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 228 LRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLAS 359
           + +++R D R   + RP T+       A GSALV  G T +L +
Sbjct: 1   MTDTIRADGRTADQLRPVTIERAWNRKAEGSALVSFGGTRVLCT 44
to top
>EXOS4_HUMAN (Q9NPD3) Exosome complex exonuclease RRP41 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 41) (Exosome component 4) (p12A)
          Length = 244

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 210 AFLERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASI 362
           A LE    +  R D RR  E R     +G  + A GSA +  G+T  LA +
Sbjct: 1   AGLELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV 51
to top
>RNPH_PASMU (Q9CJW5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           +RP+ R   + RP  +       A GS LV  GDT +L +  +E   P
Sbjct: 1   MRPNERANNQPRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEESVP 48
to top
>RRP41_SCHPO (O42872) Putative exosome complex exonuclease RRP41 (EC 3.1.13.-)|
           (Ribosomal RNA-processing protein 41)
          Length = 242

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 234 ESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASI 362
           E +R D RR  E R     +G   S +GSA + LG+T +L  +
Sbjct: 10  EGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIV 52
to top
>RNPH_STRCO (Q9S2H7) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 245

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 243 RPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLAS 359
           R D R   + RP T+  G    A GS LV  GDT +L +
Sbjct: 3   RIDGRTPQQLRPVTIERGWSKHAEGSVLVSFGDTKVLCN 41
to top
>RNPH_BACHK (Q6HD42) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 245

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +R D R   E R   +    +    GS L+ +GDT ++ S  +E   PP
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPP 49
to top
>RNPH_BACCZ (Q633V4) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 245

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +R D R   E R   +    +    GS L+ +GDT ++ S  +E   PP
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPP 49
to top
>RNPH_BACCR (Q817P3) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 245

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +R D R   E R   +    +    GS L+ +GDT ++ S  +E   PP
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPP 49
to top
>RNPH_BACC1 (Q72ZT1) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 245

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +R D R   E R   +    +    GS L+ +GDT ++ S  +E   PP
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPP 49
to top
>RNPH_BACAN (Q81LA9) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 245

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +R D R   E R   +    +    GS L+ +GDT ++ S  +E   PP
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPP 49
to top
>EXOS4_MOUSE (Q921I9) Exosome complex exonuclease RRP41 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 41) (Exosome component 4)
          Length = 244

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 210 AFLERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASI 362
           A LE    +  R D RR  E R     +G  + A GSA +  G+T  LA +
Sbjct: 1   AGLELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV 51
to top
>RNPH_VIBVY (Q7MPT3) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           +RP+ R   + RP  +     + A GS LV  G+T +L +  +E   P
Sbjct: 1   MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVP 48
to top
>RNPH_VIBVU (Q8DDX4) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           +RP+ R   + RP  +     + A GS LV  G+T +L +  +E   P
Sbjct: 1   MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVP 48
to top
>PNP_BUCAI (P57454) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 707

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 174 MEVE-AYRRLFPLAFLERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAM 350
           +E+E  ++++      +R L    R D R     R   V  G +   HGSAL   G+T  
Sbjct: 291 LEIEDIFQKIEKKVVRKRILSNQTRIDGREKDMIRALDVRTGILPRTHGSALFTRGETQS 350

Query: 351 LASIKL 368
           L S+ L
Sbjct: 351 LVSVTL 356
to top
>P100_HCMVA (P08318) Large structural phosphoprotein (pp150) (150 kDa matrix|
           phosphoprotein) (Basic phosphoprotein) (BPP) (Tegument
           protein UL32)
          Length = 1048

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +3

Query: 306 SAHGSALVRLGDTAMLASIKLEVMSPPAETPDQGSVAVGVTCRLSAP 446
           S+   ++V LG T   +    +V+SPP++TP+Q + +     +LS+P
Sbjct: 720 SSDTGSVVSLGHTTPSSDYNNDVISPPSQTPEQSTPSRIRKAKLSSP 766
to top
>EFG_THIDA (Q3SLQ2) Elongation factor G (EF-G)|
          Length = 696

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +3

Query: 216 LERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAET 395
           + ++L E   P+A  +A  R  T+A   V    G+A    G  AML  + +E+M  P + 
Sbjct: 234 MNKYLEEGDLPEADIIAALRARTIASEIVPMMCGTAFKNKGVQAMLDKV-IELMPAPTDI 292

Query: 396 P 398
           P
Sbjct: 293 P 293
to top
>RNPH_BACSK (Q5WEM3) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 250

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +R D R+  + R   +       A GS L+ +GDT ++ +  +E   PP
Sbjct: 1   MRQDGRKQNQLREVEIIPHFTKHAEGSVLISVGDTKVICTASIENRVPP 49
to top
>PATR_MYCTU (P72039) Putative phenylalanine aminotransferase (EC 2.6.1.-)|
          Length = 353

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +3

Query: 210 AFLERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLG 338
           A++E ++R+ +RPD+  L  A    V L   S A+G A +R+G
Sbjct: 186 AYVE-YIRDGMRPDSLGLVRAHNNVVVLRTFSKAYGLAGLRIG 227
to top
>PATR_MYCBO (Q7TVQ0) Putative phenylalanine aminotransferase (EC 2.6.1.-)|
          Length = 353

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +3

Query: 210 AFLERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLG 338
           A++E ++R+ +RPD+  L  A    V L   S A+G A +R+G
Sbjct: 186 AYVE-YIRDGMRPDSLGLVRAHNNVVVLRTFSKAYGLAGLRIG 227
to top
>SLN1_YEAST (P39928) Osmolarity two-component system protein SLN1 (EC 2.7.13.3)|
          Length = 1220

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 264 AEARPTTVALGAVSSAHGSALVRLGDTAMLASIKL--EVMSPPAE 392
           AEA  TT   G   S HGS      +++M ++I L  E MSPP E
Sbjct: 411 AEAGSTTSVSGHGGSGHGSGAAFSANSSMKSAINLGNEKMSPPEE 455
to top
>PNPT1_PONPY (Q5RCW2) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1)
          Length = 783

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 180 VEAYRRLFPLAFLERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLAS 359
           +E++  +    F    L E  R D R L   R  +  +    + HGSAL + G T +L +
Sbjct: 337 IESFNVVAKEVFRNIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCT 396

Query: 360 IKLE 371
           +  +
Sbjct: 397 VTFD 400
to top
>PNPT1_HUMAN (Q8TCS8) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3'-5' RNA
           exonuclease OLD35)
          Length = 783

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 180 VEAYRRLFPLAFLERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLAS 359
           +E++  +    F    L E  R D R L   R  +  +    + HGSAL + G T +L +
Sbjct: 337 IESFNVVAKEVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCT 396

Query: 360 IKLE 371
           +  +
Sbjct: 397 VTFD 400
to top
>PNP_PSEPU (O87792) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 701

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +3

Query: 222 RHLRESV-----RPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAML 353
           R +RE++     R D R     RP  + +G +   HGSAL   G+T  L
Sbjct: 304 RTVRENIVNGKPRIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQAL 352
to top
>RNPH_HAEDU (Q7VP10) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           +RP+ R   + RP  +       A GS L+  G+T +L +  +E   P
Sbjct: 1   MRPNHRENNQIRPVKITRHYTRYAEGSVLIEFGETKVLCNASIEESVP 48
to top
>RNPH_PSESM (Q88BE0) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 240

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 243 RPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLE 371
           RP  R   + R   +       A GS LV  GDT ++ ++ +E
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVE 45
to top
>MRAW_XANC5 (Q3BXF9) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 337

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +3

Query: 123 GMAAETDATAPGGLAGEMEVEAYRRLFPLAFLERHLRESVRPDARRLAEARPTTVALGAV 302
           G+ A  DA  PGG    +   +        F+ R+ +    P  RRL EA+P    L  V
Sbjct: 221 GLDAALDALKPGGRLAVISFHSLEDRIVKQFMARYAKAP--PSNRRLPEAQPFVPTLQLV 278

Query: 303 SSA 311
           S A
Sbjct: 279 SGA 281
to top
>RNPH_BURPS (Q63RV5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 243

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 237 SVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           S+RP  RR  + R   +       A G+ LV  GDT ++ +  +    P
Sbjct: 5   SLRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVP 53
to top
>RNPH_BURMA (Q62HZ8) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 243

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 237 SVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           S+RP  RR  + R   +       A G+ LV  GDT ++ +  +    P
Sbjct: 5   SLRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVP 53
to top
>RNPH_SYMTH (Q67SL5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 273

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +R D R   E RP  +       A GS L+ +G T ++ +  LE   PP
Sbjct: 1   MRQDGRLPHEMRPVRITRHYNIHAEGSVLIEVGRTRVICTATLEDRVPP 49
to top
>PNPT1_MOUSE (Q8K1R3) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3'-5' RNA
           exonuclease OLD35)
          Length = 783

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 180 VEAYRRLFPLAFLERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLAS 359
           +E++  +    F    L E  R D R L   R  +  +    + HGSAL + G T +L +
Sbjct: 337 IESFNIVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCT 396

Query: 360 IKLE 371
           +  +
Sbjct: 397 VTFD 400
to top
>COFE_MYCPA (Q73UJ3) F420-0:gamma-glutamyl ligase (EC 6.3.2.-)|
          Length = 449

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
 Frame = +3

Query: 246 PDARRL-AEARPTTVALGAVSSA-------HGSALVRLGDTAMLASIKLEVMSPPAETPD 401
           PDA R  AE    TVA+GA   A        G     +G T   A +    +  PA+   
Sbjct: 362 PDAARTDAEHTMFTVAVGAAVQALLVGLAVRGLGSCWIGSTIFAADLVRTELGLPADWEP 421

Query: 402 QGSVAVGVTCRLSAPR 449
            G++A+G     + PR
Sbjct: 422 LGAIAIGYAAEPAGPR 437
to top
>RNPH_XYLFT (Q87DG3) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 241

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 243 RPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           RP  R+    RP  +       A GS LV  G+T ++ +  +E   P
Sbjct: 5   RPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASVEAKVP 51
to top
>RNPH_XYLFA (Q9PD74) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 241

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 243 RPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           RP  R+    RP  +       A GS LV  G+T ++ +  +E   P
Sbjct: 5   RPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASVEAKVP 51
to top
>RNPH_TROWT (Q83FT1) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 247

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +R ++R   E RP  +  G    A GSAL+  G+T +L +   +   PP
Sbjct: 11  LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPP 59
to top
>RNPH_TROW8 (Q83HF6) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 247

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP 386
           +R ++R   E RP  +  G    A GSAL+  G+T +L +   +   PP
Sbjct: 11  LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPP 59
to top
>RNPH_LEGPN (Q9X528) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 235

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKL 368
           +RP  R   + RP T+     + A GS LV  G T ++ +  +
Sbjct: 1   MRPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNASI 43
to top
>RNPH_LEGPL (Q5WV28) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 235

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKL 368
           +RP  R   + RP T+     + A GS LV  G T ++ +  +
Sbjct: 1   MRPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNASI 43
to top
>RNPH_LEGPH (Q5ZTZ6) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 235

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKL 368
           +RP  R   + RP T+     + A GS LV  G T ++ +  +
Sbjct: 1   MRPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNASI 43
to top
>RNPH_LEGPA (Q5X3P0) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 235

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKL 368
           +RP  R   + RP T+     + A GS LV  G T ++ +  +
Sbjct: 1   MRPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNASI 43
to top
>EPHA3_BRARE (O13146) Ephrin type-A receptor 3 precursor (EC 2.7.10.1)|
           (Tyrosine-protein kinase receptor ZEK1) (EPH-like kinase
           1)
          Length = 981

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +3

Query: 264 AEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAETPDQGSVAVGVTCR 434
           AE+ P ++A     SA G+ +  + +TA    + LE  SPP ++  +G V+  V CR
Sbjct: 316 AESDPRSMACTRPPSAPGNPISMVNETA----VTLE-WSPPRDSGGRGDVSYSVHCR 367
to top
>PROB_PSESM (Q889F0) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)|
           (GK)
          Length = 372

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 246 PDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMS 380
           PDA+ + EAR    AL AV+   G AL R G    L + +L   S
Sbjct: 187 PDAQLIYEARADDPALDAVAGGTGGALGRGGMQTKLRAARLAARS 231
to top
>RNPH_PSEPK (Q88C89) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 240

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 243 RPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLE 371
           RP  R   + R   +       A GS LV  GDT ++ ++ +E
Sbjct: 3   RPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVE 45
to top
>PROB_PSEF5 (Q4K5T9) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)|
           (GK)
          Length = 368

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 246 PDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMS 380
           PDA+ + EAR    AL AV+   G AL R G    L + +L   S
Sbjct: 183 PDAQLIYEARADDPALDAVAGGTGGALGRGGMQTKLRAARLAARS 227
to top
>PNP_YEREN (O34275) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 706

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 23/76 (30%), Positives = 29/76 (38%)
 Frame = +3

Query: 141 DATAPGGLAGEMEVEAYRRLFPLAFLERHLRESVRPDARRLAEARPTTVALGAVSSAHGS 320
           DA     + G +E +  R         R LR   R D R     R   V  G +   HGS
Sbjct: 289 DAAEIQDILGSVEKDVVR--------SRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGS 340

Query: 321 ALVRLGDTAMLASIKL 368
           AL   G+T  L +  L
Sbjct: 341 ALFTRGETQALVTATL 356
to top
>TAL_AGRT5 (Q8U7I5) Transaldolase (EC 2.2.1.2)|
          Length = 321

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -2

Query: 448 RGADRRHVTPTATDPWSGVSAGGDITSSLIDASMAVSPRRTRADPCAEETA 296
           RG +R  +       W G+ A   + S  ID ++ +   + +A  CAE  A
Sbjct: 122 RGIERERILIKLASTWEGIKAAEVLQSEGIDCNLTLLFSQAQAIACAEAKA 172
to top
>RNPH_HAEIN (P44444) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 238

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP 383
           +RP+ R   + R   +       A GS LV  GDT +L +  +E   P
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVP 48
to top
>PNP_BUCAP (Q8K9H5) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 707

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 219 ERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKL 368
           +R L    R D R     R   +  G +   HGS+L   G+T  L S+ L
Sbjct: 307 KRILNNENRIDGREKDMIRALDIRTGVLPRTHGSSLFTRGETQSLVSVTL 356
to top
>RNPH_BIFLO (Q8G7I0) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 248

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 240 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLAS 359
           +R D R++ E RP  +      +  GS L+  G+T ++ +
Sbjct: 8   IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCT 47


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,029,816
Number of Sequences: 219361
Number of extensions: 421197
Number of successful extensions: 1962
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 1913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1962
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top