Clone Name | bart60h06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK122064.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115L08, full insert sequence Length = 1487 Score = 347 bits (175), Expect = 2e-92 Identities = 290/326 (88%), Gaps = 3/326 (0%) Strand = Plus / Plus Query: 126 atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 185 ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| ||| Sbjct: 30 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 89 Query: 186 gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 245 |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 90 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 149 Query: 246 cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 305 |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| ||| Sbjct: 150 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 209 Query: 306 tccgcgcacgggtccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 365 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 210 tccgcccacggctccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 269 Query: 366 ctcgaggtgatgtcgccccccgccgagaccccggaccaaggatcagtcgctgtgggagt- 424 |||||||||||||||||| ||| ||| |||| ||| ||||||| | ||||| ||||| Sbjct: 270 ctcgaggtgatgtcgccctccggtgaggcccccgacgaaggatctattgctgt-ggagtt 328 Query: 425 -cacatgccgcctatctgctccccgc 449 ||||||||||||||||| ||||||| Sbjct: 329 ccacatgccgcctatctgttccccgc 354
>dbj|AK102900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113A20, full insert sequence Length = 1130 Score = 347 bits (175), Expect = 2e-92 Identities = 290/326 (88%), Gaps = 3/326 (0%) Strand = Plus / Plus Query: 126 atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 185 ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| ||| Sbjct: 67 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 126 Query: 186 gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 245 |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 127 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 186 Query: 246 cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 305 |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| ||| Sbjct: 187 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 246 Query: 306 tccgcgcacgggtccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 365 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 tccgcccacggctccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 306 Query: 366 ctcgaggtgatgtcgccccccgccgagaccccggaccaaggatcagtcgctgtgggagt- 424 |||||||||||||||||| ||| ||| |||| ||| ||||||| | ||||| ||||| Sbjct: 307 ctcgaggtgatgtcgccctccggtgaggcccccgacgaaggatctattgctgt-ggagtt 365 Query: 425 -cacatgccgcctatctgctccccgc 449 ||||||||||||||||| ||||||| Sbjct: 366 ccacatgccgcctatctgttccccgc 391
>dbj|AK073252.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023A06, full insert sequence Length = 1254 Score = 347 bits (175), Expect = 2e-92 Identities = 290/326 (88%), Gaps = 3/326 (0%) Strand = Plus / Plus Query: 126 atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 185 ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| ||| Sbjct: 34 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 93 Query: 186 gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 245 |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 94 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 153 Query: 246 cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 305 |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| ||| Sbjct: 154 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 213 Query: 306 tccgcgcacgggtccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 365 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 214 tccgcccacggctccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 273 Query: 366 ctcgaggtgatgtcgccccccgccgagaccccggaccaaggatcagtcgctgtgggagt- 424 |||||||||||||||||| ||| ||| |||| ||| ||||||| | ||||| ||||| Sbjct: 274 ctcgaggtgatgtcgccctccggtgaggcccccgacgaaggatctattgctgt-ggagtt 332 Query: 425 -cacatgccgcctatctgctccccgc 449 ||||||||||||||||| ||||||| Sbjct: 333 ccacatgccgcctatctgttccccgc 358
>dbj|AK105427.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D01, full insert sequence Length = 1271 Score = 291 bits (147), Expect = 1e-75 Identities = 232/258 (89%), Gaps = 3/258 (1%) Strand = Plus / Plus Query: 194 ccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccggcccgacgc 253 |||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| Sbjct: 89 ccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgccccgacgc 148 Query: 254 ccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcctccgcgca 313 || |||| |||||| |||||||| ||||||||||| |||| |||||| |||||||| || Sbjct: 149 gcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcctccgccca 208 Query: 314 cgggtccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaagctcgaggt 373 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 209 cggctccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaagctcgaggt 268 Query: 374 gatgtcgccccccgccgagaccccggaccaaggatcagtcgctgtgggagt--cacatgc 431 |||||||||| ||| ||| |||| ||| ||||||| | ||||| ||||| ||||||| Sbjct: 269 gatgtcgccctccggtgaggcccccgacgaaggatctattgctgt-ggagttccacatgc 327 Query: 432 cgcctatctgctccccgc 449 |||||||||| ||||||| Sbjct: 328 cgcctatctgttccccgc 345
>gb|AC137922.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0046A04, complete sequence Length = 141001 Score = 254 bits (128), Expect = 2e-64 Identities = 197/220 (89%) Strand = Plus / Plus Query: 126 atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 185 ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| ||| Sbjct: 82060 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 82119 Query: 186 gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 245 |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 82120 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 82179 Query: 246 cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 305 |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| ||| Sbjct: 82180 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 82239 Query: 306 tccgcgcacgggtccgccctcgtccgcctcggcgacaccg 345 ||||| ||||| |||||||||||||||||||||||||||| Sbjct: 82240 tccgcccacggctccgccctcgtccgcctcggcgacaccg 82279 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 345 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccccccgccgagaccccggaccaa 404 ||||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||| || Sbjct: 82394 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaa 82453 Query: 405 ggatc 409 ||||| Sbjct: 82454 ggatc 82458 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 425 cacatgccgcctatctgctccccgc 449 ||||||||||||||||| ||||||| Sbjct: 82577 cacatgccgcctatctgttccccgc 82601
>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007C02, complete sequence Length = 148265 Score = 254 bits (128), Expect = 2e-64 Identities = 197/220 (89%) Strand = Plus / Minus Query: 126 atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 185 ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| ||| Sbjct: 14129 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 14070 Query: 186 gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 245 |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 14069 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 14010 Query: 246 cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 305 |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| ||| Sbjct: 14009 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 13950 Query: 306 tccgcgcacgggtccgccctcgtccgcctcggcgacaccg 345 ||||| ||||| |||||||||||||||||||||||||||| Sbjct: 13949 tccgcccacggctccgccctcgtccgcctcggcgacaccg 13910 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 345 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccccccgccgagaccccggaccaa 404 ||||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||| || Sbjct: 13795 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaa 13736 Query: 405 ggatc 409 ||||| Sbjct: 13735 ggatc 13731 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 425 cacatgccgcctatctgctccccgc 449 ||||||||||||||||| ||||||| Sbjct: 13612 cacatgccgcctatctgttccccgc 13588
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 254 bits (128), Expect = 2e-64 Identities = 197/220 (89%) Strand = Plus / Plus Query: 126 atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 185 ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| ||| Sbjct: 11880333 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 11880392 Query: 186 gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 245 |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 11880393 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 11880452 Query: 246 cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 305 |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| ||| Sbjct: 11880453 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 11880512 Query: 306 tccgcgcacgggtccgccctcgtccgcctcggcgacaccg 345 ||||| ||||| |||||||||||||||||||||||||||| Sbjct: 11880513 tccgcccacggctccgccctcgtccgcctcggcgacaccg 11880552 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 345 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccccccgccgagaccccggaccaa 404 ||||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||| || Sbjct: 11880667 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaa 11880726 Query: 405 ggatc 409 ||||| Sbjct: 11880727 ggatc 11880731 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 425 cacatgccgcctatctgctccccgc 449 ||||||||||||||||| ||||||| Sbjct: 11880850 cacatgccgcctatctgttccccgc 11880874
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 254 bits (128), Expect = 2e-64 Identities = 197/220 (89%) Strand = Plus / Plus Query: 126 atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 185 ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| ||| Sbjct: 11958740 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 11958799 Query: 186 gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 245 |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 11958800 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 11958859 Query: 246 cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 305 |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| ||| Sbjct: 11958860 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 11958919 Query: 306 tccgcgcacgggtccgccctcgtccgcctcggcgacaccg 345 ||||| ||||| |||||||||||||||||||||||||||| Sbjct: 11958920 tccgcccacggctccgccctcgtccgcctcggcgacaccg 11958959 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 345 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccccccgccgagaccccggaccaa 404 ||||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||| || Sbjct: 11959074 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaa 11959133 Query: 405 ggatc 409 ||||| Sbjct: 11959134 ggatc 11959138 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 425 cacatgccgcctatctgctccccgc 449 ||||||||||||||||| ||||||| Sbjct: 11959257 cacatgccgcctatctgttccccgc 11959281
>dbj|AK093294.1| Homo sapiens cDNA FLJ35975 fis, clone TESTI2013401 Length = 1561 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 265 ccgaagcccgccccaccaccgtcgc 289 ||||||||||||||||||||||||| Sbjct: 5 ccgaagcccgccccaccaccgtcgc 29
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Plus Query: 248 cgacgcccgacgcctcgccgaagcccgc 275 ||||||||||||||||||||| |||||| Sbjct: 72167 cgacgcccgacgcctcgccgacgcccgc 72194
>ref|NM_018114.4| Homo sapiens DALR anticodon binding domain containing 3 (DALRD3), transcript variant 2, mRNA Length = 2242 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 265 ccgaagcccgccccaccaccgtc 287 ||||||||||||||||||||||| Sbjct: 43 ccgaagcccgccccaccaccgtc 65
>dbj|AK093204.1| Homo sapiens cDNA FLJ35885 fis, clone TESTI2009018 Length = 1752 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 265 ccgaagcccgccccaccaccgtc 287 ||||||||||||||||||||||| Sbjct: 44 ccgaagcccgccccaccaccgtc 66
>gb|AC137630.9| Homo sapiens 3 BAC RP13-131K19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 120173 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Minus Query: 265 ccgaagcccgccccaccaccgtc 287 ||||||||||||||||||||||| Sbjct: 69461 ccgaagcccgccccaccaccgtc 69439
>gb|L39210.1|HUMIMPD Homo sapiens inosine monophosphate dehydrogenase type II gene, complete cds Length = 10557 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 265 ccgaagcccgccccaccaccgtc 287 ||||||||||||||||||||||| Sbjct: 10291 ccgaagcccgccccaccaccgtc 10313
>gb|AE004581.1| Pseudomonas aeruginosa PAO1, section 142 of 529 of the complete genome Length = 13203 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 128 ggccgcggagaccgacgcgacg 149 |||||||||||||||||||||| Sbjct: 10498 ggccgcggagaccgacgcgacg 10477
>emb|X12644.1|PAFFS Pseudomonas aeruginosa ffs gene for 4.5S RNA Length = 957 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 128 ggccgcggagaccgacgcgacg 149 |||||||||||||||||||||| Sbjct: 928 ggccgcggagaccgacgcgacg 907
>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16 Length = 349737 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 273 cgccccaccaccgtcgcgctcggcg 297 ||||||||||||||||| ||||||| Sbjct: 169352 cgccccaccaccgtcgccctcggcg 169328
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cgcgacggcgcccggcgggc 162 |||||||||||||||||||| Sbjct: 1456935 cgcgacggcgcccggcgggc 1456954
>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome Length = 241087 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 ccgtcgcgctcggcgccgtc 302 |||||||||||||||||||| Sbjct: 74916 ccgtcgcgctcggcgccgtc 74897
>gb|BC002864.2| Homo sapiens Down syndrome critical region gene 1, mRNA (cDNA clone MGC:10263 IMAGE:3944959), complete cds Length = 2280 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 ccgccctcgtccgcctcggc 338 |||||||||||||||||||| Sbjct: 28 ccgccctcgtccgcctcggc 9
>gb|AY325903.1| Homo sapiens calcipressin 1 large isoform (DSCR1) mRNA, complete cds Length = 2492 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 ccgccctcgtccgcctcggc 338 |||||||||||||||||||| Sbjct: 260 ccgccctcgtccgcctcggc 241
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 cggcgacaccgccatgctcg 354 |||||||||||||||||||| Sbjct: 3956940 cggcgacaccgccatgctcg 3956959
>dbj|AK092184.1| Homo sapiens cDNA FLJ34865 fis, clone NT2NE2014104, highly similar to DOWN SYNDROME CRITICAL REGION PROTEIN 1 Length = 2407 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 ccgccctcgtccgcctcggc 338 |||||||||||||||||||| Sbjct: 189 ccgccctcgtccgcctcggc 170
>dbj|AP000055.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 26/28, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ccgccctcgtccgcctcggc 338 |||||||||||||||||||| Sbjct: 24614 ccgccctcgtccgcctcggc 24633
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 cgcgacggcgcccggcgggc 162 |||||||||||||||||||| Sbjct: 8315312 cgcgacggcgcccggcgggc 8315293 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 tccccctcgcgttcctcgagcgcc 225 ||||||||||||||| |||||||| Sbjct: 7491005 tccccctcgcgttccgcgagcgcc 7491028
>ref|NM_004414.5| Homo sapiens Down syndrome critical region gene 1 (DSCR1), transcript variant 1, mRNA Length = 2457 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 ccgccctcgtccgcctcggc 338 |||||||||||||||||||| Sbjct: 209 ccgccctcgtccgcctcggc 190
>gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosynthetic gene cluster, complete cds Length = 77457 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 ccgacgcgacggcgcccggc 158 |||||||||||||||||||| Sbjct: 25620 ccgacgcgacggcgcccggc 25639
>emb|AJ332157.1|HSA332157 Homo sapiens genomic sequence surrounding NotI site, clone NL1-VL15RS Length = 818 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 tcgccccccgccgagacccc 397 |||||||||||||||||||| Sbjct: 80 tcgccccccgccgagacccc 99
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 ccgccctcgtccgcctcggcgaca 342 |||||||||||| ||||||||||| Sbjct: 1837776 ccgccctcgtcctcctcggcgaca 1837753
>dbj|AP000327.3| Homo sapiens genomic DNA, chromosome 21 clone:RP1-31L12, complete sequence Length = 35714 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ccgccctcgtccgcctcggc 338 |||||||||||||||||||| Sbjct: 23793 ccgccctcgtccgcctcggc 23812
>dbj|AP001720.1| Homo sapiens genomic DNA, chromosome 21q, section 64/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ccgccctcgtccgcctcggc 338 |||||||||||||||||||| Sbjct: 206823 ccgccctcgtccgcctcggc 206842
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 gccccaccaccgtcgcgctc 293 |||||||||||||||||||| Sbjct: 2297530 gccccaccaccgtcgcgctc 2297549 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 gccccaccaccgtcgcgctc 293 |||||||||||||||||||| Sbjct: 2295073 gccccaccaccgtcgcgctc 2295092 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cgcgacggcgcccggcgggc 162 |||||||||||||||||||| Sbjct: 1917016 cgcgacggcgcccggcgggc 1917035
>dbj|AP000170.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone B2344F14-f50E8, segment 6/9, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ccgccctcgtccgcctcggc 338 |||||||||||||||||||| Sbjct: 16582 ccgccctcgtccgcctcggc 16601 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,928,116 Number of Sequences: 3902068 Number of extensions: 1928116 Number of successful extensions: 43089 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42384 Number of HSP's gapped (non-prelim): 701 length of query: 449 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 427 effective length of database: 17,147,199,772 effective search space: 7321854302644 effective search space used: 7321854302644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)