ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart60h03 |
|---|---|
| Clone Library Name | barley_pub |
>GPAT3_ARATH (Q9SYJ2) Probable glycerol-3-phosphate acyltransferase 3 (EC| 2.3.1.15) (AtGPAT3) Length = 520 Score = 135 bits (341), Expect = 4e-32 Identities = 69/141 (48%), Positives = 95/141 (67%) Frame = +2 Query: 32 LRNKTLVLDVEGGLLRSTSTFPYFMLIAIEAGSFLRGFILLCLYPLLCCVTQEVKSKIMI 211 L TL+ +VEG LL+S S FPYFML+A EAG +R F+L LYPL+ ++ E+ K+M+ Sbjct: 42 LSRHTLIFNVEGALLKSDSLFPYFMLVAFEAGGVIRSFLLFILYPLISLMSHEMGVKVMV 101 Query: 212 MVCFVGLREEKVVRVARATLPKYFLEDLGREGLEVVSGVKRVAGVCRLIPRVMAEAFLKE 391 MV F G+++E R RA LPKYFLED+G E EV+ + GV +P+VM E FL++ Sbjct: 102 MVSFFGIKKEG-FRAGRAVLPKYFLEDVGLEMFEVLKRGGKKIGVSDDLPQVMIEGFLRD 160 Query: 392 YTEFEVVVGRRGKMIRGRYVG 454 Y E +VVVGR K++ G Y+G Sbjct: 161 YLEIDVVVGREMKVVGGYYLG 181
>GPAT2_ARATH (Q9FZ22) Probable glycerol-3-phosphate acyltransferase 2 (EC| 2.3.1.15) (AtGPAT2) Length = 530 Score = 129 bits (323), Expect = 5e-30 Identities = 69/144 (47%), Positives = 97/144 (67%), Gaps = 1/144 (0%) Frame = +2 Query: 26 EHLRNKTLVLDVEGGLLRSTSTFPYFMLIAIEAGSFLRGFILLCLYPLLCCVTQEVKSKI 205 + L N TL+ +VEG LL+S S FPYFM++A EAG +R LL LYP + ++ E+ K Sbjct: 46 QDLSNHTLIFNVEGALLKSNSLFPYFMVVAFEAGGVIRSLFLLVLYPFISLMSYEMGLKT 105 Query: 206 MIMVCFVGLREEKVVRVARATLPKYFLEDLGREGLEVVS-GVKRVAGVCRLIPRVMAEAF 382 M+M+ F G+++E RV ++ LPKYFLED+G E +V+ G KRVA +P+VM + F Sbjct: 106 MVMLSFFGVKKES-FRVGKSVLPKYFLEDVGLEMFQVLKRGGKRVA--VSDLPQVMIDVF 162 Query: 383 LKEYTEFEVVVGRRGKMIRGRYVG 454 L++Y E EVVVGR KM+ G Y+G Sbjct: 163 LRDYLEIEVVVGRDMKMVGGYYLG 186
>GPAT8_ARATH (Q5XF03) Probable glycerol-3-phosphate acyltransferase 8 (EC| 2.3.1.15) Length = 500 Score = 90.9 bits (224), Expect = 1e-18 Identities = 51/129 (39%), Positives = 78/129 (60%), Gaps = 4/129 (3%) Frame = +2 Query: 44 TLVLDVEGGLLRSTSTFPYFMLIAIEAGSFLRGFILLCLYPLLCC----VTQEVKSKIMI 211 ++ D++G LL S S+FPYFML+A+EAGS LRG ILL P + V++ + +I+I Sbjct: 23 SIAADLDGTLLLSRSSFPYFMLVAVEAGSLLRGLILLLSLPFVIISYLFVSESLGIQILI 82 Query: 212 MVCFVGLREEKVVRVARATLPKYFLEDLGREGLEVVSGVKRVAGVCRLIPRVMAEAFLKE 391 + F GL+ + V+RA LP+++ D+ ++ EV KR V P VM EAF+K+ Sbjct: 83 FISFAGLKIRDIELVSRAVLPRFYAADVRKDSFEVFDKCKRKV-VVTANPIVMVEAFVKD 141 Query: 392 YTEFEVVVG 418 Y + V+G Sbjct: 142 YLGGDKVLG 150
>GPAT5_ARATH (Q9CAY3) Glycerol-3-phosphate acyltransferase 5 (EC 2.3.1.15)| (AtGPAT5) Length = 502 Score = 87.8 bits (216), Expect = 1e-17 Identities = 49/129 (37%), Positives = 77/129 (59%), Gaps = 4/129 (3%) Frame = +2 Query: 44 TLVLDVEGGLLRSTSTFPYFMLIAIEAGSFLRGFILLCLYPLLCCVT----QEVKSKIMI 211 ++V + EG +L++ +F YFML+A EA +R ILL L+P++ + + K+ I Sbjct: 12 SVVSEFEGTILKNADSFSYFMLVAFEAAGLIRFAILLFLWPVITLLDVFSYKNAALKLKI 71 Query: 212 MVCFVGLREEKVVRVARATLPKYFLEDLGREGLEVVSGVKRVAGVCRLIPRVMAEAFLKE 391 V VGLRE ++ VARA LPK++++D+ + V S K+ V R+ PRVM E F KE Sbjct: 72 FVATVGLREPEIESVARAVLPKFYMDDVSMDTWRVFSSCKKRVVVTRM-PRVMVERFAKE 130 Query: 392 YTEFEVVVG 418 + + V+G Sbjct: 131 HLRADEVIG 139
>GPAT4_ARATH (Q9LMM0) Glycerol-3-phosphate acyltransferase 4 (EC 2.3.1.15)| (AtGPAT4) Length = 503 Score = 87.0 bits (214), Expect = 2e-17 Identities = 47/129 (36%), Positives = 77/129 (59%), Gaps = 4/129 (3%) Frame = +2 Query: 44 TLVLDVEGGLLRSTSTFPYFMLIAIEAGSFLRGFILLCLYPLLCC----VTQEVKSKIMI 211 ++ D++G LL S S+FPYFML+AIEAGS RG ILL P++ V++ + +I+I Sbjct: 23 SIAADLDGTLLLSRSSFPYFMLVAIEAGSLFRGLILLLSLPIVIIAYLFVSESLGIQILI 82 Query: 212 MVCFVGLREEKVVRVARATLPKYFLEDLGREGLEVVSGVKRVAGVCRLIPRVMAEAFLKE 391 + F G++ + + V+RA L +++ D+ ++ EV K+ V P VM E F+K+ Sbjct: 83 FISFAGIKIKNIELVSRAVLTRFYAADVRKDSFEVFDKCKKRKVVVTANPIVMVEPFVKD 142 Query: 392 YTEFEVVVG 418 Y + V+G Sbjct: 143 YLGGDKVLG 151
>GPAT1_ARATH (Q9SHJ5) Glycerol-3-phosphate acyltransferase 1 (EC 2.3.1.15)| (AtGPAT1) Length = 585 Score = 85.9 bits (211), Expect = 4e-17 Identities = 49/144 (34%), Positives = 83/144 (57%), Gaps = 6/144 (4%) Frame = +2 Query: 26 EHLRNKTLVLDVEGGLLRSTST------FPYFMLIAIEAGSFLRGFILLCLYPLLCCVTQ 187 +H R+ T D++G LLR S+ FPYFML+A E GS +R +LL L + Q Sbjct: 100 DHYRD-TFFCDIDGVLLRQHSSKHFHTFFPYFMLVAFEGGSIIRAILLLLSCSFLWTLQQ 158 Query: 188 EVKSKIMIMVCFVGLREEKVVRVARATLPKYFLEDLGREGLEVVSGVKRVAGVCRLIPRV 367 E K +++ + F GLR + + V+R+ LPK+FLE+L + ++ + + V +P+V Sbjct: 159 ETKLRVLSFITFSGLRVKDMDNVSRSVLPKFFLENLNIQVYDIWARTEYSKVVFTSLPQV 218 Query: 368 MAEAFLKEYTEFEVVVGRRGKMIR 439 + E FL+E+ + V+G + + I+ Sbjct: 219 LVERFLREHLNADDVIGTKLQEIK 242
>GPAT7_ARATH (Q9LHS7) Putative glycerol-3-phosphate acyltransferase 7 (EC| 2.3.1.15) (AtGPAT7) Length = 500 Score = 81.3 bits (199), Expect = 1e-15 Identities = 45/129 (34%), Positives = 72/129 (55%), Gaps = 4/129 (3%) Frame = +2 Query: 44 TLVLDVEGGLLRSTSTFPYFMLIAIEAGSFLRGFILLCLYPLLCCVT----QEVKSKIMI 211 ++V ++EG LL++ F YFML+A EA +R LL L+P++ + + K+MI Sbjct: 10 SVVSELEGTLLKNPKPFAYFMLVAFEASGLIRFATLLFLWPIIALLDVLGYRNGSLKLMI 69 Query: 212 MVCFVGLREEKVVRVARATLPKYFLEDLGREGLEVVSGVKRVAGVCRLIPRVMAEAFLKE 391 V GL E ++ VARA LPK+F++D+ + + V R+ PRVM E F K+ Sbjct: 70 FVATAGLHESEIESVARAVLPKFFMDDISMDAWRAFGSCDKRVVVTRM-PRVMVERFAKD 128 Query: 392 YTEFEVVVG 418 + + V+G Sbjct: 129 HLSADEVIG 137
>GPAT6_ARATH (O80437) Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15)| (AtGPAT6) Length = 501 Score = 75.5 bits (184), Expect = 6e-14 Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 4/131 (3%) Frame = +2 Query: 38 NKTLVLDVEGGLLRSTSTFPYFMLIAIEAGSFLRGFILLCLYPLL----CCVTQEVKSKI 205 N T+ D++G LL S S FPY+ L+A+EAGS LR ILL P + +++ + + Sbjct: 23 NHTVAADLDGTLLISRSAFPYYFLVALEAGSLLRALILLVSVPFVYLTYLTISETLAINV 82 Query: 206 MIMVCFVGLREEKVVRVARATLPKYFLEDLGREGLEVVSGVKRVAGVCRLIPRVMAEAFL 385 + + F GL+ V V R+ LP+++ ED+ + + + + + PR+M E F+ Sbjct: 83 FVFITFAGLKIRDVELVVRSVLPRFYAEDVRPDTWRIFNTFGK-RYIITASPRIMVEPFV 141 Query: 386 KEYTEFEVVVG 418 K + + V+G Sbjct: 142 KTFLGVDKVLG 152
>Y248_BRUSU (Q8G2R6) Maf-like protein BR0248| Length = 208 Score = 32.7 bits (73), Expect = 0.45 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +2 Query: 230 LREEKVVRVARATLPKYFLEDLGREGLEVVSG--VKRVAGVCRLIP 361 L + VV V R LPK +ED RE L ++SG K GVC ++P Sbjct: 76 LAADTVVAVGRRILPKAEIEDEARECLRLLSGRTHKVFTGVCLVLP 121
>Y1672_BRUME (Q8YF55) Maf-like protein BMEI1672| Length = 208 Score = 32.7 bits (73), Expect = 0.45 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +2 Query: 230 LREEKVVRVARATLPKYFLEDLGREGLEVVSG--VKRVAGVCRLIP 361 L + VV V R LPK +ED RE L ++SG K GVC ++P Sbjct: 76 LAADTVVAVGRRILPKAEIEDEARECLRLLSGRTHKVFTGVCLVLP 121
>FEOB_HELPY (O25396) Ferrous iron transport protein B| Length = 642 Score = 30.0 bits (66), Expect = 2.9 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%) Frame = +2 Query: 38 NKTLVLDVEGGLLRSTSTFPYFMLIAIEAGSFL----RGFILLCLYPLLCCVTQEVKSKI 205 N+ L+ G + ++ P ++L GSF GF+L C+Y +L V V +K+ Sbjct: 355 NERLITLFVIGFMSCSARLPIYVLFV---GSFFPSSSAGFVLFCIY-ILGAVVALVMAKL 410 Query: 206 MIMVCFVGLREEKVVRVARATLPKY 280 + + F G E ++ + + P + Sbjct: 411 LKLSVFKGQTESFIMEMPKYRFPSW 435
>FEOB_HELPJ (Q9ZLF3) Ferrous iron transport protein B| Length = 642 Score = 30.0 bits (66), Expect = 2.9 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%) Frame = +2 Query: 38 NKTLVLDVEGGLLRSTSTFPYFMLIAIEAGSFL----RGFILLCLYPLLCCVTQEVKSKI 205 N+ L+ G + ++ P ++L GSF GF+L C+Y +L V V +K+ Sbjct: 355 NERLITLFVIGFMSCSARLPIYVLFV---GSFFPSSSAGFVLFCIY-ILGAVVALVMAKL 410 Query: 206 MIMVCFVGLREEKVVRVARATLPKY 280 + + F G E ++ + + P + Sbjct: 411 LKLSVFKGQTESFIMEMPKYRFPSW 435
>PUS4_YEAST (P48567) tRNA pseudouridine synthase 4 (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase 4) (tRNA pseudouridylate synthase 4) Length = 403 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Frame = +1 Query: 64 RRSPEVYIYLPL----FHAYSNRGR*FPKRIYPTMPVPFAMLRDTGSKIKDHDHGVLR 225 +++P +Y L + H Y+ G+ P+ I P + + + S +DHD+ +LR Sbjct: 149 KQTPPIYAALKMDGKPLHEYAREGKPLPRAIEPRQVTIYDLKVFSDSLKRDHDYPLLR 206
>SERC_SHIFL (Q83LP3) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)| Length = 362 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 251 RVARATLPKYFLEDLGREGLEVVSGVKRVAGVCRLIPRVMAEAFLKEYTEFEVVVGRR 424 ++A + L K FLE+ GL + G + V G+ I M +K T+F V RR Sbjct: 303 QLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR 360
>SERC_SALTY (P55900) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)| Length = 362 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 251 RVARATLPKYFLEDLGREGLEVVSGVKRVAGVCRLIPRVMAEAFLKEYTEFEVVVGRR 424 ++A TL K FLE+ GL + G + V G+ I M +K T+F + RR Sbjct: 303 QLADNTLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERR 360
>SERC_SALCH (Q57R24) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)| Length = 362 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 251 RVARATLPKYFLEDLGREGLEVVSGVKRVAGVCRLIPRVMAEAFLKEYTEFEVVVGRR 424 ++A TL K FLE+ GL + G + V G+ I M +K T+F + RR Sbjct: 303 QLADNTLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERR 360
>SERC_ECOLI (P23721) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)| Length = 361 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 251 RVARATLPKYFLEDLGREGLEVVSGVKRVAGVCRLIPRVMAEAFLKEYTEFEVVVGRR 424 ++A + L K FLE+ GL + G + V G+ I M +K T+F V RR Sbjct: 302 QLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR 359
>SERC_ECOL6 (Q8FJB7) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)| Length = 361 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 251 RVARATLPKYFLEDLGREGLEVVSGVKRVAGVCRLIPRVMAEAFLKEYTEFEVVVGRR 424 ++A + L K FLE+ GL + G + V G+ I M +K T+F V RR Sbjct: 302 QLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR 359
>SERC_ECO57 (Q8XEA7) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)| Length = 361 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 251 RVARATLPKYFLEDLGREGLEVVSGVKRVAGVCRLIPRVMAEAFLKEYTEFEVVVGRR 424 ++A + L K FLE+ GL + G + V G+ I M +K T+F V RR Sbjct: 302 QLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR 359 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,399,429 Number of Sequences: 219361 Number of extensions: 1221931 Number of successful extensions: 3180 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3095 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3169 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
