Clone Name | bart60h02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_470188.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 912 Score = 75.8 bits (38), Expect = 7e-11 Identities = 44/46 (95%) Strand = Plus / Plus Query: 120 acgccgcagcagcgcggcgtgcatatgctgcatcggcccccaccac 165 ||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 69 acgccgcagcagcgccgcgtgcatatgctgcatcggcccacaccac 114 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 224 cgccgctcaccagctgctgcggca 247 |||| ||||||||||||||||||| Sbjct: 191 cgcctctcaccagctgctgcggca 214
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 75.8 bits (38), Expect = 7e-11 Identities = 44/46 (95%) Strand = Plus / Plus Query: 120 acgccgcagcagcgcggcgtgcatatgctgcatcggcccccaccac 165 ||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 1916788 acgccgcagcagcgccgcgtgcatatgctgcatcggcccacaccac 1916833 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 224 cgccgctcaccagctgctgcggca 247 |||| ||||||||||||||||||| Sbjct: 1916910 cgcctctcaccagctgctgcggca 1916933
>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06, complete sequence Length = 122218 Score = 75.8 bits (38), Expect = 7e-11 Identities = 44/46 (95%) Strand = Plus / Minus Query: 120 acgccgcagcagcgcggcgtgcatatgctgcatcggcccccaccac 165 ||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 58623 acgccgcagcagcgccgcgtgcatatgctgcatcggcccacaccac 58578 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 224 cgccgctcaccagctgctgcggca 247 |||| ||||||||||||||||||| Sbjct: 58501 cgcctctcaccagctgctgcggca 58478
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 75.8 bits (38), Expect = 7e-11 Identities = 44/46 (95%) Strand = Plus / Plus Query: 120 acgccgcagcagcgcggcgtgcatatgctgcatcggcccccaccac 165 ||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 1916786 acgccgcagcagcgccgcgtgcatatgctgcatcggcccacaccac 1916831 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 224 cgccgctcaccagctgctgcggca 247 |||| ||||||||||||||||||| Sbjct: 1916908 cgcctctcaccagctgctgcggca 1916931
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 cagcagcgtgcgcacgccgct 230 ||||||||||||||||||||| Sbjct: 4956590 cagcagcgtgcgcacgccgct 4956570
>gb|AC175318.4| Gallus gallus BAC clone CH261-46G16 from chromosome w, complete sequence Length = 205599 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 cagctgctgcggcaccgggga 254 ||||||||||||||||||||| Sbjct: 192693 cagctgctgcggcaccgggga 192713
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 cagcagcgtgcgcacgccgct 230 ||||||||||||||||||||| Sbjct: 4675831 cagcagcgtgcgcacgccgct 4675811
>gb|AE012072.1| Xanthomonas axonopodis pv. citri str. 306, section 450 of 469 of the complete genome Length = 11854 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 cagcagcgtgcgcacgccgct 230 ||||||||||||||||||||| Sbjct: 11072 cagcagcgtgcgcacgccgct 11052
>gb|AE012532.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 440 of 460 of the complete genome Length = 10505 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 cagcagcgtgcgcacgccgct 230 ||||||||||||||||||||| Sbjct: 2431 cagcagcgtgcgcacgccgct 2411
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 cagcagcgtgcgcacgccgct 230 ||||||||||||||||||||| Sbjct: 4935490 cagcagcgtgcgcacgccgct 4935470
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 cagcagcgtgcgcacgccgct 230 ||||||||||||||||||||| Sbjct: 4679810 cagcagcgtgcgcacgccgct 4679790
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 gacaacagcagcgtgcgcac 224 |||||||||||||||||||| Sbjct: 1946773 gacaacagcagcgtgcgcac 1946754
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gcgacgcccgacgccgcagc 129 |||||||||||||||||||| Sbjct: 273258 gcgacgcccgacgccgcagc 273239
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 tgcgcacgccgctcaccagc 237 |||||||||||||||||||| Sbjct: 4969428 tgcgcacgccgctcaccagc 4969409
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 tgcgcacgccgctcaccagc 237 |||||||||||||||||||| Sbjct: 4360224 tgcgcacgccgctcaccagc 4360205
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 180 cggcggcctcgcccccgtcgacgcggac 207 ||||| |||||||| ||||||||||||| Sbjct: 508384 cggcgacctcgcccgcgtcgacgcggac 508411
>dbj|D85415.2| Pseudomonas putida UCC22 plasmid pTDN1 genes for conversion of aniline to catechol, aniline degradation lower-pathway gene cluster, regulatory protein and transposase, partial and complete cds Length = 25404 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 gcagcgtgcgcacgccgctc 231 |||||||||||||||||||| Sbjct: 24034 gcagcgtgcgcacgccgctc 24053 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,854,730 Number of Sequences: 3902068 Number of extensions: 1854730 Number of successful extensions: 41747 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40844 Number of HSP's gapped (non-prelim): 903 length of query: 299 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 277 effective length of database: 17,147,199,772 effective search space: 4749774336844 effective search space used: 4749774336844 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)