>ref|XM_470188.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 912

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                         
Query: 120 acgccgcagcagcgcggcgtgcatatgctgcatcggcccccaccac 165
           ||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 69  acgccgcagcagcgccgcgtgcatatgctgcatcggcccacaccac 114



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 224 cgccgctcaccagctgctgcggca 247
           |||| |||||||||||||||||||
Sbjct: 191 cgcctctcaccagctgctgcggca 214

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                             
Query: 120     acgccgcagcagcgcggcgtgcatatgctgcatcggcccccaccac 165
               ||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 1916788 acgccgcagcagcgccgcgtgcatatgctgcatcggcccacaccac 1916833



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 224     cgccgctcaccagctgctgcggca 247
               |||| |||||||||||||||||||
Sbjct: 1916910 cgcctctcaccagctgctgcggca 1916933

>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06,
             complete sequence
          Length = 122218

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 44/46 (95%)
 Strand = Plus / Minus

                                                           
Query: 120   acgccgcagcagcgcggcgtgcatatgctgcatcggcccccaccac 165
             ||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 58623 acgccgcagcagcgccgcgtgcatatgctgcatcggcccacaccac 58578



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 224   cgccgctcaccagctgctgcggca 247
             |||| |||||||||||||||||||
Sbjct: 58501 cgcctctcaccagctgctgcggca 58478

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                             
Query: 120     acgccgcagcagcgcggcgtgcatatgctgcatcggcccccaccac 165
               ||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 1916786 acgccgcagcagcgccgcgtgcatatgctgcatcggcccacaccac 1916831



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 224     cgccgctcaccagctgctgcggca 247
               |||| |||||||||||||||||||
Sbjct: 1916908 cgcctctcaccagctgctgcggca 1916931

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 210     cagcagcgtgcgcacgccgct 230
               |||||||||||||||||||||
Sbjct: 4956590 cagcagcgtgcgcacgccgct 4956570

>gb|AC175318.4| Gallus gallus BAC clone CH261-46G16 from chromosome w, complete sequence
          Length = 205599

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 234    cagctgctgcggcaccgggga 254
              |||||||||||||||||||||
Sbjct: 192693 cagctgctgcggcaccgggga 192713

>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 210     cagcagcgtgcgcacgccgct 230
               |||||||||||||||||||||
Sbjct: 4675831 cagcagcgtgcgcacgccgct 4675811

>gb|AE012072.1| Xanthomonas axonopodis pv. citri str. 306,  section 450 of 469 of the
             complete genome
          Length = 11854

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 210   cagcagcgtgcgcacgccgct 230
             |||||||||||||||||||||
Sbjct: 11072 cagcagcgtgcgcacgccgct 11052

>gb|AE012532.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 440
            of 460 of the complete genome
          Length = 10505

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 210  cagcagcgtgcgcacgccgct 230
            |||||||||||||||||||||
Sbjct: 2431 cagcagcgtgcgcacgccgct 2411

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 210     cagcagcgtgcgcacgccgct 230
               |||||||||||||||||||||
Sbjct: 4935490 cagcagcgtgcgcacgccgct 4935470

>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 210     cagcagcgtgcgcacgccgct 230
               |||||||||||||||||||||
Sbjct: 4679810 cagcagcgtgcgcacgccgct 4679790

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 205     gacaacagcagcgtgcgcac 224
               ||||||||||||||||||||
Sbjct: 1946773 gacaacagcagcgtgcgcac 1946754

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    gcgacgcccgacgccgcagc 129
              ||||||||||||||||||||
Sbjct: 273258 gcgacgcccgacgccgcagc 273239

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 218     tgcgcacgccgctcaccagc 237
               ||||||||||||||||||||
Sbjct: 4969428 tgcgcacgccgctcaccagc 4969409

>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 218     tgcgcacgccgctcaccagc 237
               ||||||||||||||||||||
Sbjct: 4360224 tgcgcacgccgctcaccagc 4360205

>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 180    cggcggcctcgcccccgtcgacgcggac 207
              ||||| |||||||| |||||||||||||
Sbjct: 508384 cggcgacctcgcccgcgtcgacgcggac 508411

>dbj|D85415.2| Pseudomonas putida UCC22 plasmid pTDN1 genes for conversion of aniline
             to catechol, aniline degradation lower-pathway gene
             cluster, regulatory protein and transposase, partial and
             complete cds
          Length = 25404

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   gcagcgtgcgcacgccgctc 231
             ||||||||||||||||||||
Sbjct: 24034 gcagcgtgcgcacgccgctc 24053


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,854,730
Number of Sequences: 3902068
Number of extensions: 1854730
Number of successful extensions: 41747
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40844
Number of HSP's gapped (non-prelim): 903
length of query: 299
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 277
effective length of database: 17,147,199,772
effective search space: 4749774336844
effective search space used: 4749774336844
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)