>YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I|
          Length = 226

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
 Frame = +1

Query: 145 LLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLM 324
           + FD+D+ +YP S  I+      I  +  DKL I      ++    YR YG  + GL ++
Sbjct: 8   IFFDLDNCLYPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGL-VL 66

Query: 325 GYDFDYDEFHASVHGKLPYEK-LKPDPVLRSLLISM 429
            ++ D  ++   V   LP EK +K D VLR +L+ +
Sbjct: 67  HHEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLEL 102

>YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 intergenic|
           region
          Length = 321

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
 Frame = +1

Query: 151 FDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLMGY 330
           FD+D+T+Y  S  + L  ++++ ++   +L  ++    ++    Y+EYG ++ GL     
Sbjct: 57  FDIDNTLYRKSTKVQLLMQQSLSNFFKYELGFDDDEAERLIESYYQEYGLSVKGLIKNKQ 116

Query: 331 DFDYDEFHASVHGKLPYEK-LKPDPVLRSLLISM 429
             D  +++  +   LP +  LKPD  LR LLI++
Sbjct: 117 IDDVLQYNTFIDDSLPLQDYLKPDWKLRELLINL 150

>SSM1_YEAST (P53078) Protein SSM1|
          Length = 280

 Score = 37.4 bits (85), Expect = 0.015
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
 Frame = +1

Query: 151 FDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLMGY 330
           FD+D+ +Y  S  I+   +++I  +    L++       +    Y+EYG  + GL +M +
Sbjct: 60  FDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VMFH 118

Query: 331 DFDYDEFHASVHGKLPYEK-LKPDPVLRSLLISM 429
             +  E++  V   LP +  LKPD  LR++L+ +
Sbjct: 119 KVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRL 152

>MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains 6 precursor|
           (EGF-like domain-containing protein 3) (Multiple
           EGF-like domain protein 3)
          Length = 1574

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = -1

Query: 265 WGPGSPRSEVCPACSLGCSC----GMLS*FPSSVGRWCHPCQTAG 143
           WG G    E+CPAC  G SC    G     P  VG  C    +AG
Sbjct: 782 WGLGC--QEICPACEHGASCNPETGTCLCLPGFVGSRCQDTCSAG 824

>TNAP3_HUMAN (P21580) Tumor necrosis factor, alpha-induced protein 3 (EC|
           3.-.-.-) (Putative DNA-binding protein A20) (Zinc finger
           protein A20)
          Length = 790

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 192 QLSMPQEHPRLHAGQTSDRGEPGPQDVPR 278
           +L M  +HP    G  + RGEP P+D P+
Sbjct: 731 ELCMECQHPNQRMGPGAHRGEPAPEDPPK 759

>TNAP3_MACFA (Q4R8W3) Tumor necrosis factor, alpha-induced protein 3 (EC|
           3.-.-.-)
          Length = 790

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 192 QLSMPQEHPRLHAGQTSDRGEPGPQDVPR 278
           +L M  +HP    G  + RGEP P+D P+
Sbjct: 731 ELCMECQHPNPRMGPGAHRGEPAPEDPPK 759

>Y1655_PYRHO (O59346) Putative HAD-hydrolase PH1655 (EC 3.-.-.-)|
          Length = 241

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 145 LLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLM 324
           + FD+DDT+   S    +A +  I++ +   L ++        ++L +EYG+        
Sbjct: 5   IFFDLDDTLVDTSKLAEIARKNAIENMIRHGLPVDFETAYSELIELIKEYGSNFP----- 59

Query: 325 GYDFDY 342
            Y FDY
Sbjct: 60  -YHFDY 64

>FBN3_HUMAN (Q75N90) Fibrillin-3 precursor|
          Length = 2809

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 286 CTNLGTSWGPGSPRSEVCPACSLG 215
           C  LG +WG    R E+ PAC+ G
Sbjct: 835 CATLGAAWGSPCERCEIDPACARG 858

>Y1777_PYRFU (Q8U040) Putative HAD-hydrolase PF1777 (EC 3.-.-.-)|
          Length = 240

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 145 LLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLM 324
           + FD+DDT+   S    +A +  I++ +   + ++        L+L +EYG+        
Sbjct: 7   IFFDLDDTLVDTSKLAEVARKNAIENMIRHGMPVDFDTAYNELLELIKEYGSNFP----- 61

Query: 325 GYDFDY 342
            Y FDY
Sbjct: 62  -YHFDY 66

>SYFB_PROMP (Q7V1J8) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 821

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
 Frame = +1

Query: 94  PQPVKMESYANGAKFDCLLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMC 273
           P  ++ E+Y N +K +       +    L L   + C  NI++Y  D       ++P   
Sbjct: 432 PIVIRNENYENNSKLEKRYLTDTEITEKLKL---IGCTLNIKEYGWDV-----EIIPNRS 483

Query: 274 LDLYREYGTTMAGLKLMGYD-FDYDEFHASVHGKL 375
            DL RE        +L+GYD FD +  +    GKL
Sbjct: 484 QDLLREIDLIEEIARLIGYDMFDLNLPNPIKPGKL 518

>UBP8_SCHPO (Q09738) Probable ubiquitin carboxyl-terminal hydrolase 8 (EC|
           3.1.2.15) (Ubiquitin thioesterase 8) (Ubiquitin-specific
           processing protease 8) (Deubiquitinating enzyme 8)
          Length = 449

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 22/92 (23%), Positives = 38/92 (41%)
 Frame = +1

Query: 151 FDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLMGY 330
           F   D +Y   L       KNI+ +  D  ++ E     +CL+ YR+Y    A   L G 
Sbjct: 88  FGCQDYVYQTELETLRFKIKNIKAWQSDHKRLPEKYNQMVCLEAYRKYPPVCATAGLRG- 146

Query: 331 DFDYDEFHASVHGKLPYEKLKPDPVLRSLLIS 426
                   A+    +  + +  +P++R+L  S
Sbjct: 147 ---IQNLGATCFMSVILQSILHNPLVRNLFFS 175

>YB10_PYRAB (Q9V1B3) Putative HAD-hydrolase PYRAB05140 (EC 3.-.-.-)|
          Length = 238

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 145 LLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLM 324
           + FD+DDT+   +    LA R  I++ +   L ++        ++L +EYG+        
Sbjct: 5   IFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGSNFP----- 59

Query: 325 GYDFDY 342
            + FDY
Sbjct: 60  -HHFDY 64

>IE4_VZVD (P09269) Transcriptional transactivator IE4 (Immediate-early|
           protein 4) (IE4)
          Length = 452

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +3

Query: 219 RLHAGQTSDRGEPGPQDVPRFVQGIRNYNGRSETYGLRFRLR*IPRQRARK 371
           R H  ++       P   P    G RN     E+Y LRF  R   R+R RK
Sbjct: 130 RKHRDRSLSNRRRRPTTPPAMTTGERNDQTHDESYRLRFSKRDARRERIRK 180

>IPF1_HUMAN (P52945) Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum|
           homeobox 1) (PDX-1) (Islet/duodenum homeobox-1) (IDX-1)
           (Somatostatin-transactivating factor 1) (STF-1) (Insulin
           upstream factor 1) (IUF-1) (Glucose-sensitive factor)
           (GSF)
          Length = 283

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 21/48 (43%), Positives = 25/48 (52%)
 Frame = +3

Query: 144 PAV*HG*HHLPTELGNQLSMPQEHPRLHAGQTSDRGEPGPQDVPRFVQ 287
           PAV H  HHLP     QL++P  HP   AG   +  EPG  + P  VQ
Sbjct: 77  PAVAHLHHHLPA----QLALP--HP--PAGPFPEGAEPGVLEEPNRVQ 116

>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)|
            (Usher syndrome type IIa protein homolog)
          Length = 5193

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 244  SEVCPACSLGCSCGMLS*FPSSVGRWCHPCQ 152
            S +C + +  CSC      PS+ GR CH CQ
Sbjct: 957  SHICNSVTGQCSCHD----PSTTGRSCHQCQ 983

>CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)|
          Length = 637

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 165 HHLPTELGNQLSMPQEHPRLHAGQTSDRGEPGPQ-DVPRFVQGIRNYNGRS 314
           +HL  E G Q      + R   G+ S+ G+PG + D+  FV+    Y+G S
Sbjct: 368 NHLAAEEGGQRGEGPANGRGEDGEASEEGDPGQEHDITLFVKA--GYDGES 416

>YUEB_BACSU (O32101) Bacteriophage SPP1 adsorption protein yueB (Bacteriophage|
            SPP1 receptor protein yueB)
          Length = 1076

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 277  DLYREYGTTMAGLKLMGYDFDYDEFHASVHGKLPYEKLKPDPVLRSLLI 423
            D+Y   G T+   +  GY +DY      + G++P EK++  P +  L+I
Sbjct: 865  DVYGILGNTLVDGQNNGYVYDYLANPLKISGEVPEEKIQTVPPVVILVI 913


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,018,783
Number of Sequences: 219361
Number of extensions: 1205996
Number of successful extensions: 3875
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3870
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)