ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart60h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_193122.1| Oryza sativa (japonica cultivar-group), mRNA 208 1e-50
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
3dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
4dbj|AK100173.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
5dbj|AK059223.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
6dbj|AK067356.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
7ref|NM_116069.3| Arabidopsis thaliana catalytic/ hydrolase AT3G6... 50 0.006
8gb|BT010899.1| Arabidopsis thaliana At3g62040 mRNA, complete cds 50 0.006
9emb|BX822714.1|CNS0A7T1 Arabidopsis thaliana Full-length cDNA Co... 50 0.006
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.094
11gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare str... 46 0.094
12gb|AC134238.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.094
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.094
14emb|AL138651.1|ATT17J13 Arabidopsis thaliana DNA chromosome 3, B... 44 0.37
15emb|AL138642.1|ATF21F14 Arabidopsis thaliana DNA chromosome 3, B... 44 0.37
16gb|AF400249.1| Giardia intestinalis axoneme-associated protein G... 42 1.5
17ref|XM_781038.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.5
18dbj|AK142683.1| Mus musculus 10 days lactation, adult female mam... 42 1.5
19dbj|AK164795.1| Mus musculus 10 days lactation, adult female mam... 42 1.5
20dbj|AK164768.1| Mus musculus 10 days lactation, adult female mam... 42 1.5
21dbj|AK164767.1| Mus musculus 10 days lactation, adult female mam... 42 1.5
22dbj|AK164763.1| Mus musculus 10 days lactation, adult female mam... 42 1.5
23dbj|AK052780.1| Mus musculus 10 days lactation, adult female mam... 42 1.5
24dbj|AK021337.1| Mus musculus 10 days lactation, adult female mam... 42 1.5
25dbj|AK085747.1| Mus musculus 10 days lactation, adult female mam... 42 1.5
26dbj|AK085744.1| Mus musculus 10 days lactation, adult female mam... 42 1.5
27gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 42 1.5
28gb|AC074046.9|AC074046 Mus musculus 5 BAC RP23-440C1 (Roswell Pa... 42 1.5
29gb|BC002084.1| Mus musculus casein delta, mRNA (cDNA clone MGC:6... 42 1.5
30ref|NM_009973.1| Mus musculus casein delta (Csnd), mRNA 42 1.5
31emb|V00740.1|MMECAS Mouse messenger RNA for epsilon-casein 42 1.5
32gb|J00379.1|MUSECA mouse epsilon casein mrna 42 1.5
33gb|AC009253.17| Drosophila melanogaster clone BACR24F17, complet... 40 5.8
34gb|BC083769.1| Rattus norvegicus cDNA clone IMAGE:7193220 40 5.8
35gb|BC105845.1| Rattus norvegicus cDNA clone MGC:125023 IMAGE:745... 40 5.8
36gb|AC120004.14| Mus musculus chromosome 5, clone RP24-150N15, co... 40 5.8
37ref|XM_590020.2| PREDICTED: Bos taurus similar to DnaJ (Hsp40) h... 40 5.8
38ref|XM_878796.1| PREDICTED: Bos taurus similar to DnaJ (Hsp40) h... 40 5.8
39gb|AC147377.4| Mus musculus BAC clone RP23-156K23 from chromosom... 40 5.8
40gb|AY089550.1| Drosophila melanogaster LD26837 full insert cDNA 40 5.8
41gb|AC158983.2| Mus musculus BAC clone RP23-264L8 from chromosome... 40 5.8
42gb|AC124401.3| Mus musculus BAC clone RP24-362C2 from chromosome... 40 5.8
43gb|AC122466.2| Mus musculus BAC clone RP24-304N8 from chromosome... 40 5.8
44ref|NG_000018.1| Homo sapiens type I (acidic) hair keratin gene ... 40 5.8
45emb|AJ252018.1|DME252018 Drosophila melanogaster mRNA for mitoch... 40 5.8
46gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 5.8
47gb|AC069077.7| Homo sapiens chromosome 10 clone RP11-418N10, com... 40 5.8
48ref|NM_079969.2| Drosophila melanogaster Aconitase CG9244-RB (Ac... 40 5.8
49gb|AY051705.1| Drosophila melanogaster LD24561 full length cDNA 40 5.8
50gb|AC132380.6| Mus musculus BAC clone RP23-414A20 from chromosom... 40 5.8
51gb|AC093099.1| Drosophila melanogaster, chromosome 2L, region 39... 40 5.8
52gb|AC026475.6|AC026475 Homo sapiens chromosome 16 clone RP11-71H... 40 5.8
53gb|AC003958.2| Homo sapiens chromosome 17, clone RP5-18F17, comp... 40 5.8
54emb|Y16795.1|HSA16795 Homo sapiens KRTHAP1 pseudogene 40 5.8
55gb|AE003669.5| Drosophila melanogaster chromosome 2L, section 78... 40 5.8
56gb|AC006574.1|AC006574 Drosophila melanogaster, chromosome 2R, r... 40 5.8
57gb|AC151478.1| Mus musculus BAC clone RP23-83K12 from 19, comple... 40 5.8 
>ref|NM_193122.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 834

 Score =  208 bits (105), Expect = 1e-50
 Identities = 240/285 (84%)
 Strand = Plus / Plus

                                                                       
Query: 127 ggagccaaatttgactgcctgctgtttgacatggatgacaccatctacccactgagcttg 186
           |||||||| ||||| ||  ||||||||||||||||||| ||  | |||||||||||||| 
Sbjct: 19  ggagccaagtttgattgtttgctgtttgacatggatgatactctgtacccactgagctta 78

                                                                       
Query: 187 ggaatcaacttagcatgccgcaagaacatccaagactacatgctggacaaacttcagatc 246
           |||||||||||||| |||||||||||||| |||||||| |||||| |||| |||||||| 
Sbjct: 79  ggaatcaacttagcttgccgcaagaacatacaagactatatgctgaacaagcttcagatt 138

                                                                       
Query: 247 gaggagagcctggtccccaagatgtgcctagatttgtacagggaatacggaactacaatg 306
           || |||||||| || ||||||||||| || ||| ||||||||||||  ||||||||||||
Sbjct: 139 gaagagagccttgttcccaagatgtgtcttgatctgtacagggaatttggaactacaatg 198

                                                                       
Query: 307 gccggtctgaaacttatgggctacgatttcgactacgatgaattccacgccagcgtgcac 366
           || || |||||  |  |||| || ||||||||||| || || ||||||||  | || || 
Sbjct: 199 gctggactgaaggtcttgggttatgatttcgactatgacgatttccacgcttgtgttcat 258

                                                        
Query: 367 ggaaaactgccgtacgagaagctgaagccggaccctgtcctgagg 411
           || | | |||| ||||||||||||||||| ||||||||| |||||
Sbjct: 259 ggcacattgccatacgagaagctgaagcctgaccctgtcttgagg 303
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 85/99 (85%)
 Strand = Plus / Minus

                                                                            
Query: 219      agactacatgctggacaaacttcagatcgaggagagcctggtccccaagatgtgcctaga 278
                |||||| |||||| |||| |||||||| || |||||||| || ||||||||||| || ||
Sbjct: 26275111 agactatatgctgaacaagcttcagattgaagagagccttgttcccaagatgtgtcttga 26275052

                                                       
Query: 279      tttgtacagggaatacggaactacaatggccggtctgaa 317
                | ||||||||||||  |||||||||||||| || |||||
Sbjct: 26275051 tctgtacagggaatttggaactacaatggctggactgaa 26275013



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                            
Query: 154      gacatggatgacaccatctacccactgagcttgggaatcaacttagcatgccgcaagaac 213
                ||||||||||| ||  | |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 26275266 gacatggatgatactctgtacccactgagcttaggaatcaacttagcttgccgcaagaac 26275207

                       
Query: 214      atccaag 220
                || ||||
Sbjct: 26275206 atacaag 26275200



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 374      tgccgtacgagaagctgaagccggaccctgtcctgagg 411
                |||| ||||||||||||||||| ||||||||| |||||
Sbjct: 26274861 tgccatacgagaagctgaagcctgaccctgtcttgagg 26274824
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>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0455H11
          Length = 101607

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 85/99 (85%)
 Strand = Plus / Minus

                                                                         
Query: 219   agactacatgctggacaaacttcagatcgaggagagcctggtccccaagatgtgcctaga 278
             |||||| |||||| |||| |||||||| || |||||||| || ||||||||||| || ||
Sbjct: 49739 agactatatgctgaacaagcttcagattgaagagagccttgttcccaagatgtgtcttga 49680

                                                    
Query: 279   tttgtacagggaatacggaactacaatggccggtctgaa 317
             | ||||||||||||  |||||||||||||| || |||||
Sbjct: 49679 tctgtacagggaatttggaactacaatggctggactgaa 49641



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                         
Query: 154   gacatggatgacaccatctacccactgagcttgggaatcaacttagcatgccgcaagaac 213
             ||||||||||| ||  | |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 49894 gacatggatgatactctgtacccactgagcttaggaatcaacttagcttgccgcaagaac 49835

                    
Query: 214   atccaag 220
             || ||||
Sbjct: 49834 atacaag 49828



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 374   tgccgtacgagaagctgaagccggaccctgtcctgagg 411
             |||| ||||||||||||||||| ||||||||| |||||
Sbjct: 49489 tgccatacgagaagctgaagcctgaccctgtcttgagg 49452
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>dbj|AK100173.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026N03, full
           insert sequence
          Length = 1378

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                 
Query: 131 ccaaatttgactgcctgctgtttgacatggatgacaccatctacccactgagct 184
           ||||||| |||||||||||||||||| | ||||||||  | |||||||||||||
Sbjct: 196 ccaaattcgactgcctgctgtttgacctcgatgacactctgtacccactgagct 249



 Score = 46.1 bits (23), Expect = 0.094
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 367 ggaaaactgccgtacgagaagctgaagccggaccctgtcctga 409
           |||| |||||| ||||||||  | |||||||||||||||||||
Sbjct: 432 ggaagactgccctacgagaacatcaagccggaccctgtcctga 474
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>dbj|AK059223.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D05, full
           insert sequence
          Length = 1314

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                 
Query: 131 ccaaatttgactgcctgctgtttgacatggatgacaccatctacccactgagct 184
           ||||||| |||||||||||||||||| | ||||||||  | |||||||||||||
Sbjct: 195 ccaaattcgactgcctgctgtttgacctcgatgacactctgtacccactgagct 248



 Score = 46.1 bits (23), Expect = 0.094
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 367 ggaaaactgccgtacgagaagctgaagccggaccctgtcctga 409
           |||| |||||| ||||||||  | |||||||||||||||||||
Sbjct: 431 ggaagactgccctacgagaacatcaagccggaccctgtcctga 473
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>dbj|AK067356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013103J23, full
           insert sequence
          Length = 1315

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 131 ccaaatttgactgcctgctgtttgacatggatgacaccatctacccactgagct 184
           ||||||| |||||||||||||||||| | ||||||||  | || ||||||||||
Sbjct: 197 ccaaattcgactgcctgctgtttgacctcgatgacactctgtatccactgagct 250
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>ref|NM_116069.3| Arabidopsis thaliana catalytic/ hydrolase AT3G62040 mRNA, complete
           cds
          Length = 867

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 289 gaatacggaactacaatggccggtctgaaacttatgggctacgatttcgactacgatgaa 348
           ||||| ||||| || ||||| ||||| ||  ||||||| ||||| |||||| ||||||||
Sbjct: 240 gaatatggaaccaccatggctggtctcaaggttatgggttacgaattcgacaacgatgaa 299

                
Query: 349 ttcca 353
           |||||
Sbjct: 300 ttcca 304



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 187 ggaatcaacttagcatgccgcaagaacatccaagactacatgct 230
           |||||||||||||| || || || ||||||||||| | ||||||
Sbjct: 138 ggaatcaacttagcttgtcgaaacaacatccaagagttcatgct 181
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>gb|BT010899.1| Arabidopsis thaliana At3g62040 mRNA, complete cds
          Length = 750

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 289 gaatacggaactacaatggccggtctgaaacttatgggctacgatttcgactacgatgaa 348
           ||||| ||||| || ||||| ||||| ||  ||||||| ||||| |||||| ||||||||
Sbjct: 175 gaatatggaaccaccatggctggtctcaaggttatgggttacgaattcgacaacgatgaa 234

                
Query: 349 ttcca 353
           |||||
Sbjct: 235 ttcca 239



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 187 ggaatcaacttagcatgccgcaagaacatccaagactacatgct 230
           |||||||||||||| || || || ||||||||||| | ||||||
Sbjct: 73  ggaatcaacttagcttgtcgaaacaacatccaagagttcatgct 116
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>emb|BX822714.1|CNS0A7T1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB5ZB10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 885

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 289 gaatacggaactacaatggccggtctgaaacttatgggctacgatttcgactacgatgaa 348
           ||||| ||||| || ||||| ||||| ||  ||||||| ||||| |||||| ||||||||
Sbjct: 257 gaatatggaaccaccatggctggtctcaaggttatgggttacgaattcgacaacgatgaa 316

                
Query: 349 ttcca 353
           |||||
Sbjct: 317 ttcca 321



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 187 ggaatcaacttagcatgccgcaagaacatccaagactacatgct 230
           |||||||||||||| || || || ||||||||||| | ||||||
Sbjct: 155 ggaatcaacttagcttgtcgaaacaacatccaagagttcatgct 198
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 367     ggaaaactgccgtacgagaagctgaagccggaccctgtcctga 409
               |||| |||||| ||||||||  | |||||||||||||||||||
Sbjct: 9175856 ggaagactgccctacgagaacatcaagccggaccctgtcctga 9175898



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 131     ccaaatttgactgcctgctgtttg 154
               ||||||| ||||||||||||||||
Sbjct: 9175207 ccaaattcgactgcctgctgtttg 9175230
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>gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0032O19, from chromosome 3, complete sequence
          Length = 142248

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 367    ggaaaactgccgtacgagaagctgaagccggaccctgtcctga 409
              |||| |||||| ||||||||  | |||||||||||||||||||
Sbjct: 110535 ggaagactgccctacgagaacatcaagccggaccctgtcctga 110493



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 131    ccaaatttgactgcctgctgtttg 154
              ||||||| ||||||||||||||||
Sbjct: 111184 ccaaattcgactgcctgctgtttg 111161
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>gb|AC134238.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0016G06,
              complete sequence
          Length = 119910

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 367    ggaaaactgccgtacgagaagctgaagccggaccctgtcctga 409
              |||| |||||| ||||||||  | |||||||||||||||||||
Sbjct: 119036 ggaagactgccctacgagaacatcaagccggaccctgtcctga 119078



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 131    ccaaatttgactgcctgctgtttg 154
              ||||||| ||||||||||||||||
Sbjct: 118387 ccaaattcgactgcctgctgtttg 118410
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 367     ggaaaactgccgtacgagaagctgaagccggaccctgtcctga 409
               |||| |||||| ||||||||  | |||||||||||||||||||
Sbjct: 9173689 ggaagactgccctacgagaacatcaagccggaccctgtcctga 9173731



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 131     ccaaatttgactgcctgctgtttg 154
               ||||||| ||||||||||||||||
Sbjct: 9173040 ccaaattcgactgcctgctgtttg 9173063
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>emb|AL138651.1|ATT17J13 Arabidopsis thaliana DNA chromosome 3, BAC clone T17J13
          Length = 85217

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 320  ttatgggctacgatttcgactacgatgaattcca 353
            ||||||| ||||| |||||| |||||||||||||
Sbjct: 3682 ttatgggttacgaattcgacaacgatgaattcca 3649
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>emb|AL138642.1|ATF21F14 Arabidopsis thaliana DNA chromosome 3, BAC clone F21F14
          Length = 142001

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 320    ttatgggctacgatttcgactacgatgaattcca 353
              ||||||| ||||| |||||| |||||||||||||
Sbjct: 138709 ttatgggttacgaattcgacaacgatgaattcca 138676
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>gb|AF400249.1| Giardia intestinalis axoneme-associated protein GASP-180 gene,
            complete cds
          Length = 5504

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 410  ggagcctgctgatttcgatgc 430
            |||||||||||||||||||||
Sbjct: 1368 ggagcctgctgatttcgatgc 1348
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>ref|XM_781038.1| PREDICTED: Strongylocentrotus purpuratus similar to CG32662-PA
           (LOC581012), partial mRNA
          Length = 566

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 46  cagctcctgctctgtcttcct 66
           |||||||||||||||||||||
Sbjct: 358 cagctcctgctctgtcttcct 338



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 46  cagctcctgctctgtcttcct 66
           |||||||||||||||||||||
Sbjct: 229 cagctcctgctctgtcttcct 209
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>dbj|AK142683.1| Mus musculus 10 days lactation, adult female mammary gland cDNA,
           RIKEN full-length enriched library, clone:D730048M03
           product:casein delta, full insert sequence
          Length = 920

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 aagaacatccaagactacatg 228
           |||||||||||||||||||||
Sbjct: 510 aagaacatccaagactacatg 530
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>dbj|AK164795.1| Mus musculus 10 days lactation, adult female mammary gland cDNA,
           RIKEN full-length enriched library, clone:D730045O16
           product:casein delta, full insert sequence
          Length = 758

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 aagaacatccaagactacatg 228
           |||||||||||||||||||||
Sbjct: 348 aagaacatccaagactacatg 368
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>dbj|AK164768.1| Mus musculus 10 days lactation, adult female mammary gland cDNA,
           RIKEN full-length enriched library, clone:D730018I02
           product:casein delta, full insert sequence
          Length = 761

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 aagaacatccaagactacatg 228
           |||||||||||||||||||||
Sbjct: 350 aagaacatccaagactacatg 370
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>dbj|AK164767.1| Mus musculus 10 days lactation, adult female mammary gland cDNA,
           RIKEN full-length enriched library, clone:D730018F19
           product:casein delta, full insert sequence
          Length = 762

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 aagaacatccaagactacatg 228
           |||||||||||||||||||||
Sbjct: 352 aagaacatccaagactacatg 372
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>dbj|AK164763.1| Mus musculus 10 days lactation, adult female mammary gland cDNA,
           RIKEN full-length enriched library, clone:D730017I01
           product:casein delta, full insert sequence
          Length = 745

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 aagaacatccaagactacatg 228
           |||||||||||||||||||||
Sbjct: 335 aagaacatccaagactacatg 355
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>dbj|AK052780.1| Mus musculus 10 days lactation, adult female mammary gland cDNA,
           RIKEN full-length enriched library, clone:D730001A11
           product:casein delta, full insert sequence
          Length = 759

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 aagaacatccaagactacatg 228
           |||||||||||||||||||||
Sbjct: 350 aagaacatccaagactacatg 370
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>dbj|AK021337.1| Mus musculus 10 days lactation, adult female mammary gland cDNA,
           RIKEN full-length enriched library, clone:D730043N14
           product:casein delta, full insert sequence
          Length = 756

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 aagaacatccaagactacatg 228
           |||||||||||||||||||||
Sbjct: 348 aagaacatccaagactacatg 368
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>dbj|AK085747.1| Mus musculus 10 days lactation, adult female mammary gland cDNA,
           RIKEN full-length enriched library, clone:D730040A14
           product:casein delta, full insert sequence
          Length = 760

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 aagaacatccaagactacatg 228
           |||||||||||||||||||||
Sbjct: 350 aagaacatccaagactacatg 370
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>dbj|AK085744.1| Mus musculus 10 days lactation, adult female mammary gland cDNA,
           RIKEN full-length enriched library, clone:D730034M22
           product:casein delta, full insert sequence
          Length = 766

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 aagaacatccaagactacatg 228
           |||||||||||||||||||||
Sbjct: 352 aagaacatccaagactacatg 372
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 342     cgatgaattccacgccagcgt 362
               |||||||||||||||||||||
Sbjct: 3300832 cgatgaattccacgccagcgt 3300852
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>gb|AC074046.9|AC074046 Mus musculus 5 BAC RP23-440C1 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 182534

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 208   aagaacatccaagactacatg 228
             |||||||||||||||||||||
Sbjct: 24975 aagaacatccaagactacatg 24955
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>gb|BC002084.1| Mus musculus casein delta, mRNA (cDNA clone MGC:6256
           IMAGE:3489886), complete cds
          Length = 760

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 aagaacatccaagactacatg 228
           |||||||||||||||||||||
Sbjct: 333 aagaacatccaagactacatg 353
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>ref|NM_009973.1| Mus musculus casein delta (Csnd), mRNA
          Length = 728

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 aagaacatccaagactacatg 228
           |||||||||||||||||||||
Sbjct: 318 aagaacatccaagactacatg 338
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>emb|V00740.1|MMECAS Mouse messenger RNA for epsilon-casein
          Length = 728

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 aagaacatccaagactacatg 228
           |||||||||||||||||||||
Sbjct: 318 aagaacatccaagactacatg 338
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>gb|J00379.1|MUSECA mouse epsilon casein mrna
          Length = 729

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 aagaacatccaagactacatg 228
           |||||||||||||||||||||
Sbjct: 318 aagaacatccaagactacatg 338
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>gb|AC009253.17| Drosophila melanogaster clone BACR24F17, complete sequence
          Length = 160280

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 373    ctgccgtacgagaagctgaa 392
              ||||||||||||||||||||
Sbjct: 155169 ctgccgtacgagaagctgaa 155188
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>gb|BC083769.1| Rattus norvegicus cDNA clone IMAGE:7193220
          Length = 1680

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 aggagagcctggtccccaag 267
           ||||||||||||||||||||
Sbjct: 750 aggagagcctggtccccaag 769
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>gb|BC105845.1| Rattus norvegicus cDNA clone MGC:125023 IMAGE:7456327, complete cds
          Length = 1445

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 aggagagcctggtccccaag 267
           ||||||||||||||||||||
Sbjct: 522 aggagagcctggtccccaag 541
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>gb|AC120004.14| Mus musculus chromosome 5, clone RP24-150N15, complete sequence
          Length = 199229

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    tcctgctctgtcttccttcc 69
             ||||||||||||||||||||
Sbjct: 61413 tcctgctctgtcttccttcc 61394
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>ref|XM_590020.2| PREDICTED: Bos taurus similar to DnaJ (Hsp40) homolog, subfamily C,
            member 10, transcript variant 2 (LOC539876), mRNA
          Length = 3606

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 151  tttgacatggatgacaccat 170
            ||||||||||||||||||||
Sbjct: 1958 tttgacatggatgacaccat 1939
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>ref|XM_878796.1| PREDICTED: Bos taurus similar to DnaJ (Hsp40) homolog, subfamily C,
            member 10, transcript variant 3 (LOC539876), mRNA
          Length = 3474

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 151  tttgacatggatgacaccat 170
            ||||||||||||||||||||
Sbjct: 1826 tttgacatggatgacaccat 1807
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>gb|AC147377.4| Mus musculus BAC clone RP23-156K23 from chromosome 5, complete sequence
          Length = 236084

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    tcctgctctgtcttccttcc 69
             ||||||||||||||||||||
Sbjct: 29282 tcctgctctgtcttccttcc 29301
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>gb|AY089550.1| Drosophila melanogaster LD26837 full insert cDNA
          Length = 4025

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 373  ctgccgtacgagaagctgaa 392
            ||||||||||||||||||||
Sbjct: 2595 ctgccgtacgagaagctgaa 2576
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>gb|AC158983.2| Mus musculus BAC clone RP23-264L8 from chromosome 14, complete sequence
          Length = 218519

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   tttgacatggatgacaccat 170
             ||||||||||||||||||||
Sbjct: 74461 tttgacatggatgacaccat 74442
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>gb|AC124401.3| Mus musculus BAC clone RP24-362C2 from chromosome 19, complete sequence
          Length = 138622

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   ggagagcctggtccccaaga 268
             ||||||||||||||||||||
Sbjct: 88618 ggagagcctggtccccaaga 88599
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>gb|AC122466.2| Mus musculus BAC clone RP24-304N8 from chromosome 5, complete sequence
          Length = 196687

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    tcctgctctgtcttccttcc 69
             ||||||||||||||||||||
Sbjct: 57092 tcctgctctgtcttccttcc 57073
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>ref|NG_000018.1| Homo sapiens type I (acidic) hair keratin gene cluster (KRTHA.1@) on
             chromosome 17
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aaaaaaatccactgctgacc 20
             ||||||||||||||||||||
Sbjct: 21860 aaaaaaatccactgctgacc 21841
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>emb|AJ252018.1|DME252018 Drosophila melanogaster mRNA for mitochondrial aconitase (mAc gene)
          Length = 2889

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 373 ctgccgtacgagaagctgaa 392
           ||||||||||||||||||||
Sbjct: 304 ctgccgtacgagaagctgaa 323
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 345     tgaattccacgccagcgtgc 364
               ||||||||||||||||||||
Sbjct: 1060143 tgaattccacgccagcgtgc 1060124
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>gb|AC069077.7| Homo sapiens chromosome 10 clone RP11-418N10, complete sequence
          Length = 160384

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 52     ctgctctgtcttccttccgttcag 75
              ||||||||||||||||| ||||||
Sbjct: 120779 ctgctctgtcttccttctgttcag 120756
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>ref|NM_079969.2| Drosophila melanogaster Aconitase CG9244-RB (Acon), mRNA
          Length = 3156

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 373 ctgccgtacgagaagctgaa 392
           ||||||||||||||||||||
Sbjct: 564 ctgccgtacgagaagctgaa 583
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>gb|AY051705.1| Drosophila melanogaster LD24561 full length cDNA
          Length = 2751

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 373 ctgccgtacgagaagctgaa 392
           ||||||||||||||||||||
Sbjct: 270 ctgccgtacgagaagctgaa 289
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>gb|AC132380.6| Mus musculus BAC clone RP23-414A20 from chromosome 16, complete
             sequence
          Length = 198912

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   ccatctacccactgagcttg 186
             ||||||||||||||||||||
Sbjct: 76445 ccatctacccactgagcttg 76426
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>gb|AC093099.1| Drosophila melanogaster, chromosome 2L, region 39A-39D, BAC clone
            BACR34H23, complete sequence
          Length = 163475

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 373  ctgccgtacgagaagctgaa 392
            ||||||||||||||||||||
Sbjct: 9627 ctgccgtacgagaagctgaa 9646
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>gb|AC026475.6|AC026475 Homo sapiens chromosome 16 clone RP11-71H23, complete sequence
          Length = 159611

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 150    gtttgacatggatgacaccatcta 173
              |||| |||||||||||||||||||
Sbjct: 114999 gttttacatggatgacaccatcta 115022
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>gb|AC003958.2| Homo sapiens chromosome 17, clone RP5-18F17, complete sequence
          Length = 127833

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aaaaaaatccactgctgacc 20
             ||||||||||||||||||||
Sbjct: 21859 aaaaaaatccactgctgacc 21840
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>emb|Y16795.1|HSA16795 Homo sapiens KRTHAP1 pseudogene
          Length = 6673

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    aaaaaaatccactgctgacc 20
            ||||||||||||||||||||
Sbjct: 1622 aaaaaaatccactgctgacc 1603
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>gb|AE003669.5| Drosophila melanogaster chromosome 2L, section 78 of 83 of the complete
              sequence
          Length = 273993

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 373    ctgccgtacgagaagctgaa 392
              ||||||||||||||||||||
Sbjct: 159965 ctgccgtacgagaagctgaa 159984
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>gb|AC006574.1|AC006574 Drosophila melanogaster, chromosome 2R, region 39A3-39B1, P1 clones
             DS02919 and DS05130, complete sequence
          Length = 127035

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 373   ctgccgtacgagaagctgaa 392
             ||||||||||||||||||||
Sbjct: 87472 ctgccgtacgagaagctgaa 87491
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>gb|AC151478.1| Mus musculus BAC clone RP23-83K12 from 19, complete sequence
          Length = 219132

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   ggagagcctggtccccaaga 268
             ||||||||||||||||||||
Sbjct: 75428 ggagagcctggtccccaaga 75409


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,116,663
Number of Sequences: 3902068
Number of extensions: 3116663
Number of successful extensions: 73820
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73620
Number of HSP's gapped (non-prelim): 199
length of query: 430
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 408
effective length of database: 17,147,199,772
effective search space: 6996057506976
effective search space used: 6996057506976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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