ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart60g11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106084.1| Zea mays PCO072275 mRNA sequence Length = 1307 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Plus Query: 177 cgtcagcaaggacgcctccacctccctctaca 208 ||||| ||||||||| |||||||||||||||| Sbjct: 163 cgtcaccaaggacgcgtccacctccctctaca 194
>emb|AJ581529.1|HVU581529 Hordeum vulgare xi gene for xylanase inhibitor Length = 1255 Score = 46.1 bits (23), Expect = 0.089 Identities = 29/31 (93%) Strand = Plus / Plus Query: 178 gtcagcaaggacgcctccacctccctctaca 208 |||| |||||||||| ||||||||||||||| Sbjct: 97 gtcaccaaggacgccgccacctccctctaca 127
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 96 tgcgctcgcggcgctgctggca 117 |||||||||||||||||||||| Sbjct: 907536 tgcgctcgcggcgctgctggca 907557
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 105 ggcgctgctggcactgggggtg 126 |||||||||||||||||||||| Sbjct: 2646850 ggcgctgctggcactgggggtg 2646871 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 tggcccgcgtcagcaaggac 189 |||||||||||||||||||| Sbjct: 2117095 tggcccgcgtcagcaaggac 2117114
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 cgtccccgcaccgcatcgttcc 305 |||||||||||||||||||||| Sbjct: 33808541 cgtccccgcaccgcatcgttcc 33808520 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 cctccacctccctctacaac 210 |||||||||||||||||||| Sbjct: 18957460 cctccacctccctctacaac 18957441
>gb|AC135594.4| Oryza sativa chromosome 3 BAC OSJNBa0024F18 genomic sequence, complete sequence Length = 159795 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 cgtccccgcaccgcatcgttcc 305 |||||||||||||||||||||| Sbjct: 64699 cgtccccgcaccgcatcgttcc 64720
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 cgtccccgcaccgcatcgttcc 305 |||||||||||||||||||||| Sbjct: 33899013 cgtccccgcaccgcatcgttcc 33898992 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 cctccacctccctctacaac 210 |||||||||||||||||||| Sbjct: 18951501 cctccacctccctctacaac 18951482
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 330 ggtgtccactacgtaccgcccgcccg 355 ||||||||| |||||||||||||||| Sbjct: 2744772 ggtgtccaccacgtaccgcccgcccg 2744797 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 ctcgacctcgccggccccatgctc 267 |||||||||||||||| ||||||| Sbjct: 4865873 ctcgacctcgccggccacatgctc 4865896 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 tcctcgacctcgccggcccc 261 |||||||||||||||||||| Sbjct: 2974006 tcctcgacctcgccggcccc 2973987 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 236 cgctgctcctcgacctcgccggcc 259 ||||||||||||||| |||||||| Sbjct: 1163485 cgctgctcctcgaccacgccggcc 1163508
>gb|BC056573.1| Danio rerio zgc:65879, mRNA (cDNA clone MGC:65879 IMAGE:6800889), complete cds Length = 2701 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 111 gctggcactgggggtgctgctgggc 135 ||||||||||| ||||||||||||| Sbjct: 1357 gctggcactggcggtgctgctgggc 1381
>gb|BC065361.1| Danio rerio zgc:65879, mRNA (cDNA clone MGC:77440 IMAGE:6971142), complete cds Length = 4028 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 111 gctggcactgggggtgctgctgggc 135 ||||||||||| ||||||||||||| Sbjct: 1355 gctggcactggcggtgctgctgggc 1379
>ref|NM_200561.2| Danio rerio zgc:65879 (zgc:65879), mRNA Length = 4028 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 111 gctggcactgggggtgctgctgggc 135 ||||||||||| ||||||||||||| Sbjct: 1355 gctggcactggcggtgctgctgggc 1379
>gb|AE011784.1| Xanthomonas axonopodis pv. citri str. 306, section 162 of 469 of the complete genome Length = 13803 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cgcggcgctgctggcactggg 122 ||||||||||||||||||||| Sbjct: 11882 cgcggcgctgctggcactggg 11862
>ref|XM_624993.1| PREDICTED: Apis mellifera similar to hepatocyte nuclear factor 6 (LOC552619), mRNA Length = 1788 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 ctcctcgacctcgccggcccc 261 ||||||||||||||||||||| Sbjct: 1230 ctcctcgacctcgccggcccc 1210
>ref|NM_174725.2| Bos taurus endothelial PAS domain protein 1 (EPAS1), mRNA Length = 2888 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 gctgctggcactgggggtgct 128 ||||||||||||||||||||| Sbjct: 1695 gctgctggcactgggggtgct 1675
>gb|AE004966.1| Pseudomonas aeruginosa PAO1, section 527 of 529 of the complete genome Length = 10821 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 104 cggcgctgctggcactgggggtgctgctg 132 |||||||||||| ||||||||||| |||| Sbjct: 9199 cggcgctgctggaactgggggtgccgctg 9171
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 97 gcgctcgcggcgctgctggcactgggggt 125 ||||||||||||||||| || |||||||| Sbjct: 78565 gcgctcgcggcgctgctcgccctgggggt 78537
>dbj|AB018399.1| Bos taurus mRNA for endothelial PAS domain protein 1/hypoxia-inducible factor-2 alpha, complete cds Length = 2888 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 gctgctggcactgggggtgct 128 ||||||||||||||||||||| Sbjct: 1695 gctgctggcactgggggtgct 1675
>gb|AC153812.1| Homo sapiens chromosome 9 clone fa1022, complete sequence Length = 38508 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 accgcccgcccggctgcccc 363 |||||||||||||||||||| Sbjct: 30203 accgcccgcccggctgcccc 30222
>ref|NM_190078.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1305 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 195 cacctccctctacaacatcgccatcaag 222 |||||||||||||| |||||||||||| Sbjct: 129 cacctccctctacacgatcgccatcaag 156
>ref|XM_592084.2| PREDICTED: Bos taurus similar to AT rich interactive domain 1A (SWI- like) isoform a, transcript variant 1 (LOC540181), mRNA Length = 7114 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 gctggcactgggggtgctgctggg 134 |||||| ||||||||||||||||| Sbjct: 545 gctggctctgggggtgctgctggg 522
>ref|NM_213272.1| Danio rerio zgc:77377 (zgc:77377), mRNA Length = 3862 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cagctcggcggctgcgctcg 103 |||||||||||||||||||| Sbjct: 556 cagctcggcggctgcgctcg 537
>emb|AJ697851.1| Triticum aestivum xi-IB gene for xylanase inhibitor precursor, exon 1 Length = 1206 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 178 gtcagcaaggacgcctccacctccctctacaacatc 213 |||| ||||||| || ||||||||||||||| |||| Sbjct: 82 gtcaccaaggacaccgccacctccctctacaccatc 117
>ref|XM_860856.1| PREDICTED: Canis familiaris similar to AT rich interactive domain 1A (SWI- like) isoform c, transcript variant 3 (LOC487352), mRNA Length = 7836 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 gctggcactgggggtgctgctggg 134 |||||| ||||||||||||||||| Sbjct: 2017 gctggctctgggggtgctgctggg 1994
>ref|XM_860834.1| PREDICTED: Canis familiaris similar to AT rich interactive domain 1A (SWI- like) isoform c, transcript variant 2 (LOC487352), mRNA Length = 7595 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 gctggcactgggggtgctgctggg 134 |||||| ||||||||||||||||| Sbjct: 2017 gctggctctgggggtgctgctggg 1994
>ref|XM_847453.1| PREDICTED: Canis familiaris similar to AT rich interactive domain 1A (SWI- like) isoform c, transcript variant 1 (LOC487352), mRNA Length = 8487 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 gctggcactgggggtgctgctggg 134 |||||| ||||||||||||||||| Sbjct: 2017 gctggctctgggggtgctgctggg 1994
>emb|CR392000.2| Human DNA sequence from clone WI2-1959D15 on chromosome 9, complete sequence Length = 32108 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 accgcccgcccggctgcccc 363 |||||||||||||||||||| Sbjct: 17248 accgcccgcccggctgcccc 17267
>emb|AL596442.33| Human DNA sequence from clone RP11-302L19 on chromosome 6 Contains a novel gene, a ribosomal protein L12 (RPL12) and five CpG islands, complete sequence Length = 110817 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 gcactgggggtgctgctggg 134 |||||||||||||||||||| Sbjct: 49696 gcactgggggtgctgctggg 49715
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 catcgccatcaaggtcggcg 229 |||||||||||||||||||| Sbjct: 1912 catcgccatcaaggtcggcg 1893
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 tcggcggctgcgctcgcggc 107 |||||||||||||||||||| Sbjct: 1473465 tcggcggctgcgctcgcggc 1473446
>emb|AL080313.13|HSDJ448I9 Human DNA sequence from clone RP3-448I9 on chromosome 6 Contains two novel genes, complete sequence Length = 94371 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tggcactgggggtgctgctg 132 |||||||||||||||||||| Sbjct: 30560 tggcactgggggtgctgctg 30579
>gb|BC068186.1| Danio rerio zgc:77377, mRNA (cDNA clone MGC:77377 IMAGE:6969157), complete cds Length = 3862 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cagctcggcggctgcgctcg 103 |||||||||||||||||||| Sbjct: 556 cagctcggcggctgcgctcg 537
>emb|BX572608.1| Rhodopseudomonas palustris CGA009 complete genome; segment 16/16 Length = 227214 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 gccgacgatggcggccagcc 164 |||||||||||||||||||| Sbjct: 124694 gccgacgatggcggccagcc 124713
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 gcggcgctgctggcactggg 122 |||||||||||||||||||| Sbjct: 1937898 gcggcgctgctggcactggg 1937917
>emb|AJ581532.1|SCE581532 Secale cereale xi-II/III gene for xylanase inhibitor Length = 1245 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 178 gtcagcaaggacgcctccacctccctctacaacatc 213 |||| ||||||| || ||||||||||||||| |||| Sbjct: 90 gtcaccaaggaccccgccacctccctctacaccatc 125
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 cggcggctgcgctcgcggcgctgc 112 |||||||||||| ||||||||||| Sbjct: 3773962 cggcggctgcgcgcgcggcgctgc 3773985
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 gctcctcgacctcgccggcc 259 |||||||||||||||||||| Sbjct: 9883089 gctcctcgacctcgccggcc 9883070
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 195 cacctccctctacaacatcgccatcaag 222 |||||||||||||| |||||||||||| Sbjct: 41168878 cacctccctctacacgatcgccatcaag 41168905
>gb|AC135560.4| Oryza sativa chromosome 3 BAC OSJNBa0031I04 genomic sequence, complete sequence Length = 168859 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 cctccacctccctctacaac 210 |||||||||||||||||||| Sbjct: 42181 cctccacctccctctacaac 42200
>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504E02 Length = 137468 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 195 cacctccctctacaacatcgccatcaag 222 |||||||||||||| |||||||||||| Sbjct: 65933 cacctccctctacacgatcgccatcaag 65960
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 gcgctcgcggcgctgctggc 116 |||||||||||||||||||| Sbjct: 1403399 gcgctcgcggcgctgctggc 1403380
>dbj|AB178471.1| Triticum aestivum Taxi-III gene for xylanase inhibitor, complete cds, upstream region Length = 2322 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 178 gtcagcaaggacgcctccacctccctctacaacatc 213 |||| ||||||| || ||||||||||||||| |||| Sbjct: 1158 gtcaccaaggacaccgccacctccctctacaccatc 1193
>dbj|AB114627.1| Triticum aestivum Taxi-III mRNA for xylanase inhibitor TAXI-III, complete cds Length = 1411 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 178 gtcagcaaggacgcctccacctccctctacaacatc 213 |||| ||||||| || ||||||||||||||| |||| Sbjct: 161 gtcaccaaggacaccgccacctccctctacaccatc 196
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0063H02 Length = 152326 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 gctcctcgacctcgccggcc 259 |||||||||||||||||||| Sbjct: 79724 gctcctcgacctcgccggcc 79705
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 gcggcgctgctggcactggg 122 |||||||||||||||||||| Sbjct: 1959923 gcggcgctgctggcactggg 1959942
>gb|AC005696.1|AC005696 Homo sapiens chromosome 17, clone hRPK.74_E_22, complete sequence Length = 177411 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 gcgtcagcaaggacgcctcc 195 |||||||||||||||||||| Sbjct: 68987 gcgtcagcaaggacgcctcc 68968
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 ggccgacgatggcggccagc 163 |||||||||||||||||||| Sbjct: 932770 ggccgacgatggcggccagc 932789 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 ggccgacgatggcggccagc 163 |||||||||||||||||||| Sbjct: 265658 ggccgacgatggcggccagc 265677
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ggccgacgatggcggccagc 163 |||||||||||||||||||| Sbjct: 2212074 ggccgacgatggcggccagc 2212055
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 gcgctcgcggcgctgctggc 116 |||||||||||||||||||| Sbjct: 180251 gcgctcgcggcgctgctggc 180270 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,901,152 Number of Sequences: 3902068 Number of extensions: 2901152 Number of successful extensions: 63217 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61164 Number of HSP's gapped (non-prelim): 2053 length of query: 412 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 390 effective length of database: 17,147,199,772 effective search space: 6687407911080 effective search space used: 6687407911080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
