>EF1D_RABIT (P53787) Elongation factor 1-delta (EF-1-delta)|
          Length = 280

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 20/45 (44%), Positives = 25/45 (55%)
 Frame = -2

Query: 205 RAMPPPTLVVAADAEPEEEGGSRLPGSEEEADPHGAAPRADERLR 71
           R + PP    AA AE +E+    L GS+EE D   A  R +ERLR
Sbjct: 136 RQVEPPAKKAAAPAEDDEDDDIDLFGSDEEEDKEAARLR-EERLR 179

>EF1D_MOUSE (P57776) Elongation factor 1-delta (EF-1-delta)|
          Length = 280

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = -2

Query: 205 RAMPPPTLVVAADAEPEEEGGSRLPGSEEEADPHGAAPRADERLR 71
           R + PPT   A  AE +E+    L GS+EE +   AA   +ERLR
Sbjct: 135 RQVEPPTKKGATPAEDDEDKDIDLFGSDEEEEDKEAARLREERLR 179

>DOS_MOUSE (Q66L44) Protein Dos (Downstream of Stk11 protein) (Fragment)|
          Length = 552

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +3

Query: 279 RSLVRSNDDAGSGSRGHGNAGSSCPLPNSSCALHATRSQCR 401
           R  VRS D +GSGS G G A +  P P S  AL     + R
Sbjct: 304 RDSVRSGDSSGSGSGGGGAAPAFPPPPESPPALRPKDGEAR 344

>GLGB_STRAU (P52980) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 764

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -2

Query: 208 DRAMPPPTLVVAADAEPEEEGGSRLPGSEEEADPHGAAP----RADERLRL 68
           D+A P P    AA A P+   G+R P +   A PHG  P     A+ER RL
Sbjct: 13  DKAAPEP----AAPAAPK---GARAPRARRAAPPHGVRPAPALAAEERARL 56

>EF1D_HUMAN (P29692) Elongation factor 1-delta (EF-1-delta) (Antigen NY-CO-4)|
          Length = 280

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 205 RAMPPPTLVVAADAEPEEEGGSRLPGSEEEADPHGAAPRADERLR 71
           R + PP    A  AE +E+    L GS+ E +   AA   +ERLR
Sbjct: 135 RQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLR 179

>PRTP_EBV (P25939) Probable processing and transport protein|
          Length = 789

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 376 RAQEELGKGQEEPALPCPRLPEPASS 299
           RA + LG+G+EE +   P +P PA +
Sbjct: 493 RAMQRLGRGEEEASRESPEVPRPAGA 518

>PRP17_MOUSE (Q9DC48) Pre-mRNA-splicing factor PRP17 (Cell division cycle 40|
           homolog)
          Length = 579

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 306 AGSGSRGHGNA-GSSCPLPNSSCALHATRS 392
           +GSGS    ++ GS CPLP +   +H T+S
Sbjct: 14  SGSGSESDSDSEGSRCPLPAADSLMHLTKS 43

>SNUT1_MOUSE (Q9Z315) U4/U6.U5 tri-snRNP-associated protein 1 (Squamous cell|
           carcinoma antigen recognized by T-cells 1) (SART-1)
           (mSART-1) (Hypoxia-associated factor)
          Length = 806

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -2

Query: 202 AMPPP---TLVVAADAEPEEEGGSRLPGSEEEADPHGAAPRADERLRLG 65
           A PPP   T V   D   EE+GG+  PGS E  +   A     ++L  G
Sbjct: 464 AQPPPSDDTRVENMDISDEEDGGALPPGSPEGLEEDEAELELQKQLEKG 512

>VPAP_HHV11 (P10226) DNA polymerase processivity factor (Polymerase accessory|
           protein) (PAP) (DNA-binding protein UL42)
          Length = 488

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +3

Query: 237 RAICSHPLDFQQSVRSLVRSNDDA---GSGSRGHGNAGSSCPLPNSSCALHATRSQCR 401
           RA  S P D Q S    V   D     G+   G   A  +CP+P+S+  +  T  + R
Sbjct: 340 RASGSEPTDSQDSASDAVSHGDPEDLDGAARAGEAGALHACPMPSSTTRVTPTTKRGR 397

>ZBED3_HUMAN (Q96IU2) Zinc finger BED domain-containing protein 3|
          Length = 234

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 376 RAQEELGKGQEEPALPCPRLPEPASS 299
           R  E  G G   PA PCP  P PA++
Sbjct: 99  RELESSGAGSSPPAAPCPPPPGPAAA 124

>E41L1_HUMAN (Q9H4G0) Band 4.1-like protein 1 (Neuronal protein 4.1) (4.1N)|
          Length = 881

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 250 EQIALLYMKSCSSLDRAMPPP-TLVVAADAEPEEEGGSRLPGSEEEADPHGAAPRADERL 74
           E + L +  S + L R +  P + ++  D + E E   RLP S     P G   +A+ER 
Sbjct: 501 EDVLLKHQASINELKRTLKEPNSKLIHRDRDWERE--RRLPSSPASPSPKGTPEKANERA 558

Query: 73  RL 68
            L
Sbjct: 559 GL 560

>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing|
            protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1
            ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral
            sclerosis 2 chromosomal region candidate 9 gene protein)
          Length = 1302

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 208  DRAMPPPTLVVAADAEPEEEGGSRLPG-SEEEADPHGAAPRADERLRL 68
            D A+PPP   + +D +    GGS + G +     P  A P+ D+  +L
Sbjct: 1251 DMALPPPPPELLSDQQKAGYGGSHISGYATLRRGPPPAPPKRDQNTKL 1298

>GDF6_BOVIN (P55106) Growth/differentiation factor 6 precursor (GDF-6)|
           (Cartilage-derived morphogenetic protein 2) (CDMP-2)
           (Fragment)
          Length = 436

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -2

Query: 211 LDRAMPPPTLVVAADAEPEEEGGSRLPGSEEEADPHGAAPR 89
           LDR  PPP         P+EE   R P   E  +P G  PR
Sbjct: 34  LDRQEPPP--------RPQEEPQRRPPQQPEAREPPGRGPR 66

>ZDHC9_BOVIN (Q58DA8) Palmitoyltransferase ZDHHC9 (EC 2.3.1.-) (Zinc finger DHHC|
           domain-containing protein 9) (DHHC-9) (DHHC9)
          Length = 363

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -2

Query: 229 MKSCSSLDRAMPPPTLVVAADAEPEEEGGSRLPGSEEEAD---PHGAAP 92
           +K+C  +     PP+++      P EE GSR P ++E +    P G AP
Sbjct: 280 VKNCCEVLCGPLPPSVLDRRGILPLEESGSRPPSTQEASTSLLPQGPAP 328

>PRP17_HUMAN (O60508) Pre-mRNA-splicing factor PRP17 (hPRP17) (Cell division|
           cycle 40 homolog) (EH-binding protein 3) (Ehb3)
          Length = 579

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 306 AGSGSRGHGNAGSS-CPLPNSSCALHATRS 392
           +GSGS    ++ SS CPLP +   +H T+S
Sbjct: 14  SGSGSESDSDSESSRCPLPAADSLMHLTKS 43

>SIRT6_HUMAN (Q8N6T7) Mono-ADP-ribosyltransferase sirtuin-6 (EC 2.4.2.31)|
           (SIR2-like protein 6)
          Length = 355

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = -2

Query: 211 LDRAMPPPTLVVAADAEPEEEGGSRLPGS-------EEEADPHGAAPRADERLR 71
           L+RA+PP         EP+EE  +R+ GS       E  A  +G+ P + +R R
Sbjct: 282 LERALPPLPRPPTPKLEPKEESPTRINGSIPAGPKQEPCAQHNGSEPASPKRER 335

>VCOM_ADEM1 (O10442) Minor core protein (Protein V) (pV)|
          Length = 228

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 147 AARACPVQRKRRTRMAPLPGQTSASGSGFAELDPVQMSRRASES 16
           AAR  P +R+RR R +P P  T+A  S     + V+  RR +++
Sbjct: 150 AARISPPRRRRRRRRSPRPRATAAYRS---SAEVVERRRRVAQT 190

>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator|
            of retinoic acid and thyroid hormone receptor) (SMRT)
            (SMRTe) (Thyroid-, retinoic-acid-receptor-associated
            corepressor) (T3 receptor-associating factor) (TRAC) (CTG
            repeat p
          Length = 2517

 Score = 25.0 bits (53), Expect(2) = 7.5
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 208  DRAMPPPTLVVAADAEPEEEGGSRLP 131
            D  +PPP     A   P  EGG R P
Sbjct: 2182 DLYLPPPDHGAPARGSPHSEGGKRSP 2207



 Score = 20.8 bits (42), Expect(2) = 7.5
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -3

Query: 108  RMAPLPGQTSASGSGFAELDPVQMSRRASESSFAQN 1
            + +P P +TS  G G   ++PV      +E   +++
Sbjct: 2204 KRSPEPNKTSVLGGGEDGIEPVSPPEGMTEPGHSRS 2239

>GOGA3_HUMAN (Q08378) Golgin subfamily A member 3 (Golgin-160) (Golgi|
           complex-associated protein of 170 kDa) (GCP170)
          Length = 1498

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 249 SHPLDFQQSVRSLVRSNDDAGSGSRGHGNAGSSCPLPNSS 368
           +HP + + S  S +RS  D  +     GN+G + P P+S+
Sbjct: 230 AHPREKKTSKSSKIRSLADYRTEDSNAGNSGGNVPAPDST 269

>CHI1_RHINI (P29025) Chitinase 1 precursor (EC 3.2.1.14)|
          Length = 493

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -3

Query: 105 MAPLPGQTSASGSGF---AELDPVQMSRRASESSF 10
           M  +PG ++A+GSG+   AEL P+  S  +  SSF
Sbjct: 249 MLTVPGSSTAAGSGYASIAELGPIVSSVISQYSSF 283

>CEA1_SHISO (P21178) Colicin-E1*|
          Length = 521

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +3

Query: 261 DFQQSVRSLVRSNDDAGSGSRGHGNAGSSCPLPNSSCALHAT 386
           D  + + +L+  N D GSGS G G  G S     SS A+HAT
Sbjct: 16  DKGEVIITLLNGNPD-GSGSGGGGGTGGS--KSESSAAIHAT 54

>YNM4_YEAST (P53919) Hypothetical 54.9 kDa protein in SPC98-TOM70 intergenic|
           region
          Length = 492

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 169 DAEPEEEGGSRLPGSEEEADPHGAAP 92
           D E E+EGG  +   +E+ DP  + P
Sbjct: 85  DVEGEDEGGDAIENEDEDEDPSPSGP 110

>ULK1_MOUSE (O70405) Serine/threonine-protein kinase ULK1 (EC 2.7.11.1)|
           (Unc-51-like kinase 1) (Serine/threonine-protein kinase
           Unc51.1)
          Length = 1051

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 35  DICTGSSSAKPEPEALVCPGS 97
           D+   ++SAKP P++L+C GS
Sbjct: 367 DLVAEAASAKPPPDSLLCSGS 387


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,522,835
Number of Sequences: 219361
Number of extensions: 760359
Number of successful extensions: 3348
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3344
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)