ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart60g07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY112524.1| Zea mays CL50600_1 mRNA sequence Length = 1046 Score = 83.8 bits (42), Expect = 4e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 314 aggcagccgcgggcacggcaatgccggttcctcttgccccttacccaactcctcctgcgc 373 |||||||||| |||||||||||||||||||| ||||| || |||||| ||||||| |||| Sbjct: 797 aggcagccgccggcacggcaatgccggttccgcttgctccgtacccagctcctccggcgc 738 Query: 374 ccttcacgcc 383 | |||||||| Sbjct: 737 cattcacgcc 728
>gb|AY525368.1| Oryza sativa (japonica cultivar-group) zinc finger protein LSD1 mRNA, complete cds Length = 988 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 325 ggcacggcaatgccggttcctcttgccccttacccaac 362 |||||||||||||||||||| ||||| || |||||||| Sbjct: 181 ggcacggcaatgccggttccccttgctccatacccaac 218
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 325 ggcacggcaatgccggttcctcttgccccttacccaac 362 |||||||||||||||||||| ||||| || |||||||| Sbjct: 3456540 ggcacggcaatgccggttccccttgctccatacccaac 3456503
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 325 ggcacggcaatgccggttcctcttgccccttacccaactcct 366 ||||| |||||||||||||| |||||||| || ||||||||| Sbjct: 34521796 ggcacagcaatgccggttccccttgccccatatccaactcct 34521837
>dbj|AP004064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1520_C09 Length = 145553 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 325 ggcacggcaatgccggttcctcttgccccttacccaactcct 366 ||||| |||||||||||||| |||||||| || ||||||||| Sbjct: 32736 ggcacagcaatgccggttccccttgccccatatccaactcct 32777
>dbj|AK111759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055E16, full insert sequence Length = 1221 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 325 ggcacggcaatgccggttcctcttgccccttacccaac 362 |||||||||||||||||||| ||||| || |||||||| Sbjct: 511 ggcacggcaatgccggttccccttgctccatacccaac 548
>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498E12 Length = 153523 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 325 ggcacggcaatgccggttcctcttgccccttacccaac 362 |||||||||||||||||||| ||||| || |||||||| Sbjct: 89959 ggcacggcaatgccggttccccttgctccatacccaac 89922
>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0672D01 Length = 146954 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 325 ggcacggcaatgccggttcctcttgccccttacccaac 362 |||||||||||||||||||| ||||| || |||||||| Sbjct: 12257 ggcacggcaatgccggttccccttgctccatacccaac 12220
>dbj|AK099623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053G12, full insert sequence Length = 1713 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 325 ggcacggcaatgccggttcctcttgccccttacccaactcct 366 ||||| |||||||||||||| |||||||| || ||||||||| Sbjct: 1087 ggcacagcaatgccggttccccttgccccatatccaactcct 1128
>gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0022I16, complete sequence Length = 127068 Score = 48.1 bits (24), Expect = 0.022 Identities = 40/44 (90%), Gaps = 1/44 (2%) Strand = Plus / Minus Query: 325 ggcacggcaatgccggttcctcttgcc-ccttacccaactcctc 367 |||||||||||||||||||| |||||| || || |||||||||| Sbjct: 66050 ggcacggcaatgccggttccccttgcctccatatccaactcctc 66007
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence Length = 147117 Score = 48.1 bits (24), Expect = 0.022 Identities = 40/44 (90%), Gaps = 1/44 (2%) Strand = Plus / Plus Query: 325 ggcacggcaatgccggttcctcttgcc-ccttacccaactcctc 367 |||||||||||||||||||| |||||| || || |||||||||| Sbjct: 66501 ggcacggcaatgccggttccccttgcctccatatccaactcctc 66544
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.022 Identities = 40/44 (90%), Gaps = 1/44 (2%) Strand = Plus / Plus Query: 325 ggcacggcaatgccggttcctcttgcc-ccttacccaactcctc 367 |||||||||||||||||||| |||||| || || |||||||||| Sbjct: 21391488 ggcacggcaatgccggttccccttgcctccatatccaactcctc 21391531 Score = 48.1 bits (24), Expect = 0.022 Identities = 40/44 (90%), Gaps = 1/44 (2%) Strand = Plus / Minus Query: 325 ggcacggcaatgccggttcctcttgcc-ccttacccaactcctc 367 |||||||||||||||||||| |||||| || || |||||||||| Sbjct: 5302852 ggcacggcaatgccggttccccttgcctccatatccaactcctc 5302809
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.022 Identities = 40/44 (90%), Gaps = 1/44 (2%) Strand = Plus / Plus Query: 325 ggcacggcaatgccggttcctcttgcc-ccttacccaactcctc 367 |||||||||||||||||||| |||||| || || |||||||||| Sbjct: 21402751 ggcacggcaatgccggttccccttgcctccatatccaactcctc 21402794 Score = 48.1 bits (24), Expect = 0.022 Identities = 40/44 (90%), Gaps = 1/44 (2%) Strand = Plus / Minus Query: 325 ggcacggcaatgccggttcctcttgcc-ccttacccaactcctc 367 |||||||||||||||||||| |||||| || || |||||||||| Sbjct: 5303639 ggcacggcaatgccggttccccttgcctccatatccaactcctc 5303596
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 46.1 bits (23), Expect = 0.087 Identities = 23/23 (100%) Strand = Plus / Minus Query: 161 ctcggcgtcggcggcgacgacga 183 ||||||||||||||||||||||| Sbjct: 3859161 ctcggcgtcggcggcgacgacga 3859139
>ref|NM_102090.2| Arabidopsis thaliana 3-deoxy-7-phosphoheptulonate synthase AT1G22410 mRNA, complete cds Length = 1911 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 162 tcggcgtcggcggcgacgacga 183 |||||||||||||||||||||| Sbjct: 217 tcggcgtcggcggcgacgacga 238
>ref|NM_190289.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 210 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 162 tcggcgtcggcggcgacgacga 183 |||||||||||||||||||||| Sbjct: 74 tcggcgtcggcggcgacgacga 95
>gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete sequence Length = 107200 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 162 tcggcgtcggcggcgacgacga 183 |||||||||||||||||||||| Sbjct: 95765 tcggcgtcggcggcgacgacga 95744
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 162 tcggcgtcggcggcgacgacga 183 |||||||||||||||||||||| Sbjct: 39070542 tcggcgtcggcggcgacgacga 39070521 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 cggcgtcggcggcgacgacga 183 ||||||||||||||||||||| Sbjct: 39010902 cggcgtcggcggcgacgacga 39010922 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 173 ggcgacgacgagcgtcggtggcggc 197 ||||||||||||||| ||||||||| Sbjct: 8638145 ggcgacgacgagcgtgggtggcggc 8638169 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 162 tcggcgtcggcggcgacgacgagcg 186 |||||||||||||||||| |||||| Sbjct: 2487217 tcggcgtcggcggcgacggcgagcg 2487193 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 gctcggcgtcggcggcgacgacga 183 |||||||||||| ||||||||||| Sbjct: 42578165 gctcggcgtcggaggcgacgacga 42578188 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cggcgtcggcggcgacgacg 182 |||||||||||||||||||| Sbjct: 24039657 cggcgtcggcggcgacgacg 24039638
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506A10 Length = 145265 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 162 tcggcgtcggcggcgacgacga 183 |||||||||||||||||||||| Sbjct: 88522 tcggcgtcggcggcgacgacga 88501 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 cggcgtcggcggcgacgacga 183 ||||||||||||||||||||| Sbjct: 28882 cggcgtcggcggcgacgacga 28902
>ref|XM_316546.2| Anopheles gambiae str. PEST ENSANGP00000010005 (ENSANGG00000007516), partial mRNA Length = 1752 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 71 ccggaggcgctcgtctgcccggggag 96 |||||||||| ||||||||||||||| Sbjct: 704 ccggaggcgcccgtctgcccggggag 679
>ref|XM_550124.1| Oryza sativa (japonica cultivar-group), mRNA Length = 426 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 162 tcggcgtcggcggcgacgacgagcg 186 |||||||||||||||||| |||||| Sbjct: 295 tcggcgtcggcggcgacggcgagcg 319
>ref|NM_187932.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1008 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 173 ggcgacgacgagcgtcggtggcggc 197 ||||||||||||||| ||||||||| Sbjct: 606 ggcgacgacgagcgtgggtggcggc 582
>ref|NM_190278.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2883 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 cggcgtcggcggcgacgacga 183 ||||||||||||||||||||| Sbjct: 153 cggcgtcggcggcgacgacga 133
>ref|NM_192723.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 744 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 cggcgtcggcggcgacgacga 183 ||||||||||||||||||||| Sbjct: 474 cggcgtcggcggcgacgacga 494
>ref|XM_472828.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1758 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 cggctcggcgtcggcggcgac 178 ||||||||||||||||||||| Sbjct: 771 cggctcggcgtcggcggcgac 751
>gb|AC108875.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1123_C08, complete sequence Length = 132017 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 cggcgtcggcggcgacgacga 183 ||||||||||||||||||||| Sbjct: 26052 cggcgtcggcggcgacgacga 26072
>gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10, complete sequence Length = 149870 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 cggcgtcggcggcgacgacga 183 ||||||||||||||||||||| Sbjct: 135716 cggcgtcggcggcgacgacga 135736
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 tcctccggctcggcgtcggcg 173 ||||||||||||||||||||| Sbjct: 2810002 tcctccggctcggcgtcggcg 2809982 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 179 gacgagcgtcggtggcggcat 199 ||||||||||||||||||||| Sbjct: 2352794 gacgagcgtcggtggcggcat 2352814 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 149 ttcttcctccggctcggcgtcggcggcg 176 |||||| || |||||||||||||||||| Sbjct: 3749426 ttcttcatctggctcggcgtcggcggcg 3749453
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 cggctcggcgtcggcggcgac 178 ||||||||||||||||||||| Sbjct: 23506706 cggctcggcgtcggcggcgac 23506686
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 cggcgtcggcggcgacgacga 183 ||||||||||||||||||||| Sbjct: 20137391 cggcgtcggcggcgacgacga 20137411 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cggcgtcggcggcgacgacg 182 |||||||||||||||||||| Sbjct: 23902481 cggcgtcggcggcgacgacg 23902462 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 cggcgtcggcggcgacgacgagcg 186 ||||| |||||||||||||||||| Sbjct: 13196456 cggcgacggcggcgacgacgagcg 13196433
>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416D03 Length = 157112 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 162 tcggcgtcggcggcgacgacgagcg 186 |||||||||||||||||| |||||| Sbjct: 41638 tcggcgtcggcggcgacggcgagcg 41614
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0674H09 Length = 142955 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 cggcgtcggcggcgacgacga 183 ||||||||||||||||||||| Sbjct: 84535 cggcgtcggcggcgacgacga 84555
>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0462H08 Length = 139152 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 173 ggcgacgacgagcgtcggtggcggc 197 ||||||||||||||| ||||||||| Sbjct: 70340 ggcgacgacgagcgtgggtggcggc 70364
>emb|AJ620676.1| Oryza sativa (japonica cultivar-group) mRNA for zinc finger protein, clone Z52 Length = 715 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 330 ggcaatgccggttcctcttgccccttacccaac 362 ||||||||||||||| ||||| || |||||||| Sbjct: 1 ggcaatgccggttccccttgctccatacccaac 33
>dbj|AK109720.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-A07, full insert sequence Length = 995 Score = 42.1 bits (21), Expect = 1.4 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 168 tcggcggcgacgacgagcgtcggtggcgg 196 |||||||||||||||||| |||||||||| Sbjct: 559 tcggcggcgacgacgagc-tcggtggcgg 586
>dbj|AK070176.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046E07, full insert sequence Length = 2635 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 cggcgtcggcggcgacgacga 183 ||||||||||||||||||||| Sbjct: 293 cggcgtcggcggcgacgacga 273
>gb|AC156998.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0086B08, complete sequence Length = 148274 Score = 42.1 bits (21), Expect = 1.4 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 168 tcggcggcgacgacgagcgtcggtggcgg 196 |||||||||||||||||| |||||||||| Sbjct: 39629 tcggcggcgacgacgagc-tcggtggcgg 39602
>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence Length = 139298 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 cggctcggcgtcggcggcgac 178 ||||||||||||||||||||| Sbjct: 62609 cggctcggcgtcggcggcgac 62589
>ref|NM_185070.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1798 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 cggcgtcggcggcgacgacgagcg 186 ||||| |||||||||||||||||| Sbjct: 489 cggcggcggcggcgacgacgagcg 512
>ref|NM_189398.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 552 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 160 gctcggcgtcggcggcgacgacga 183 |||||||||||| ||||||||||| Sbjct: 166 gctcggcgtcggaggcgacgacga 143
>ref|XM_479357.1| Oryza sativa (japonica cultivar-group), mRNA Length = 645 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 ggcgtcggcggcgacgacga 183 |||||||||||||||||||| Sbjct: 532 ggcgtcggcggcgacgacga 551
>ref|XM_476668.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1435 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 cggcgtcggcggcgacgacgagcg 186 ||||| |||||||||||||||||| Sbjct: 107 cggcggcggcggcgacgacgagcg 130
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 gcgacgagcaggatttcatg 230 |||||||||||||||||||| Sbjct: 1759499 gcgacgagcaggatttcatg 1759518
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 atcccctcgacttccagcag 272 |||||||||||||||||||| Sbjct: 5132052 atcccctcgacttccagcag 5132033
>gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1119_H02, complete sequence Length = 138584 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cggcgtcggcggcgacgacg 182 |||||||||||||||||||| Sbjct: 106316 cggcgtcggcggcgacgacg 106297
>gb|AC135915.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0082F22, complete sequence Length = 176038 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 cggcgtcggcggcgacgacgagcg 186 ||||| |||||||||||||||||| Sbjct: 159233 cggcgacggcggcgacgacgagcg 159210
>gb|AC093955.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1240_E09, complete sequence Length = 118742 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 cggcgtcggcggcgacgacgagcg 186 ||||| |||||||||||||||||| Sbjct: 30455 cggcgacggcggcgacgacgagcg 30432
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 cggcgtcggcggcgacgacgagcg 186 ||||| |||||||||||||||||| Sbjct: 32887366 cggcggcggcggcgacgacgagcg 32887343
>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete sequence Length = 151479 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 cggcgtcggcggcgacgacgagcg 186 ||||| |||||||||||||||||| Sbjct: 102809 cggcggcggcggcgacgacgagcg 102832
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 cgcagcaacgacgacgccgg 310 |||||||||||||||||||| Sbjct: 2469871 cgcagcaacgacgacgccgg 2469852
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 ccttcacgccacccgctccc 393 |||||||||||||||||||| Sbjct: 1767093 ccttcacgccacccgctccc 1767074
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 ggcgtcggcggcgacgacga 183 |||||||||||||||||||| Sbjct: 27196551 ggcgtcggcggcgacgacga 27196532 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 cggcgtcggcggcgacgacgagcg 186 ||||| |||||||||||||||||| Sbjct: 2826393 cggcggcggcggcgacgacgagcg 2826416
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 cggcgtcggcggcgacgacgagcg 186 ||||| |||||||||||||||||| Sbjct: 32977876 cggcggcggcggcgacgacgagcg 32977853
>gb|AE009465.1| Brucella melitensis 16M chromosome I, section 22 of 195 of the complete sequence Length = 11987 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gcgacgagcaggatttcatg 230 |||||||||||||||||||| Sbjct: 2723 gcgacgagcaggatttcatg 2704
>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0458E05 Length = 193577 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 gctcggcgtcggcggcgacgacga 183 |||||||||||| ||||||||||| Sbjct: 99048 gctcggcgtcggaggcgacgacga 99071
>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E03 Length = 164839 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cggcgtcggcggcgacgacg 182 |||||||||||||||||||| Sbjct: 15479 cggcgtcggcggcgacgacg 15460
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 cggctcggcgtcggcggcga 177 |||||||||||||||||||| Sbjct: 3144032 cggctcggcgtcggcggcga 3144013
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 gcgacgagcaggatttcatg 230 |||||||||||||||||||| Sbjct: 1776391 gcgacgagcaggatttcatg 1776410
>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1364A02 Length = 137933 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 cggcgtcggcggcgacgacgagcg 186 ||||| |||||||||||||||||| Sbjct: 129954 cggcggcggcggcgacgacgagcg 129977
>dbj|AP006459.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0084D17 Length = 143931 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 ggcgtcggcggcgacgacga 183 |||||||||||||||||||| Sbjct: 61770 ggcgtcggcggcgacgacga 61751
>gb|AC158181.2| Selaginella moellendorffii clone JGIASXY-5D1, complete sequence Length = 34893 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 cggcgtcggcggcgacgacgagcg 186 ||||||||||||||||||| |||| Sbjct: 14652 cggcgtcggcggcgacgacaagcg 14629
>dbj|AK110242.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-162-G05, full insert sequence Length = 2733 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 gctcggcgtcggcggcgacgacga 183 ||||||||||| |||||||||||| Sbjct: 2442 gctcggcgtcgacggcgacgacga 2465
>dbj|AK108917.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-H04, full insert sequence Length = 1220 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 cggcgtcggcggcgacgacgagcg 186 ||||| |||||||||||||||||| Sbjct: 420 cggcgacggcggcgacgacgagcg 443
>dbj|AK107795.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-133-D09, full insert sequence Length = 899 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 160 gctcggcgtcggcggcgacgacga 183 |||||||||||| ||||||||||| Sbjct: 264 gctcggcgtcggaggcgacgacga 241
>dbj|AK069135.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007E22, full insert sequence Length = 1017 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cggcgtcggcggcgacgacg 182 |||||||||||||||||||| Sbjct: 174 cggcgtcggcggcgacgacg 193
>dbj|AK068589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153H07, full insert sequence Length = 1720 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 cggcgtcggcggcgacgacgagcg 186 ||||| |||||||||||||||||| Sbjct: 500 cggcggcggcggcgacgacgagcg 523
>dbj|AK065458.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023D18, full insert sequence Length = 1435 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 cggcgtcggcggcgacgacgagcg 186 ||||| |||||||||||||||||| Sbjct: 107 cggcggcggcggcgacgacgagcg 130
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gcggcgacgacgagcgtcgg 190 |||||||||||||||||||| Sbjct: 2860455 gcggcgacgacgagcgtcgg 2860474
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 gcgacgagcaggatttcatg 230 |||||||||||||||||||| Sbjct: 1773536 gcgacgagcaggatttcatg 1773555
>dbj|D78609.1|RICBZIPPA Oryza sativa (japonica cultivar-group) mRNA for bZIP protein, complete cds Length = 1696 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 cggcgtcggcggcgacgacgagcg 186 ||||| |||||||||||||||||| Sbjct: 465 cggcggcggcggcgacgacgagcg 488 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,654,355 Number of Sequences: 3902068 Number of extensions: 2654355 Number of successful extensions: 63333 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 60997 Number of HSP's gapped (non-prelim): 2338 length of query: 401 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 379 effective length of database: 17,147,199,772 effective search space: 6498788713588 effective search space used: 6498788713588 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
