ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart60f10 |
|---|---|
| Clone Library Name | barley_pub |
>WRK17_ARATH (Q9SJA8) Probable WRKY transcription factor 17 (WRKY DNA-binding| protein 17) Length = 321 Score = 92.8 bits (229), Expect = 4e-19 Identities = 64/138 (46%), Positives = 81/138 (58%), Gaps = 15/138 (10%) Frame = +3 Query: 84 MTMDLIGGYGRADEQVAIQEAAAAGLRGMEHLILQLSRTGTSESSPVGSSEAPEQGKQQV 263 MT+D++ + ++Q AIQEAA+ GL+ MEHLI LS PE+ + V Sbjct: 1 MTVDIMR-LPKMEDQTAIQEAASQGLKSMEHLIRVLSNR-------------PEE--RNV 44 Query: 264 DCREITDMTVSKFKKVISILNHRTGHARFRRGPV-------------VAQSQGPAVSEPA 404 DC EITD TVSKFKKVIS+LN R+GHARFRRGPV V +S PA Sbjct: 45 DCSEITDFTVSKFKKVISLLN-RSGHARFRRGPVHSPPSSSVPPPVKVTTPAPTQISAPA 103 Query: 405 PVR--ASSSRSMTLDFTR 452 PV ++ +S+TLDFTR Sbjct: 104 PVSFVQANQQSVTLDFTR 121
>WRK11_ARATH (Q9SV15) Probable WRKY transcription factor 11 (WRKY DNA-binding| protein 11) Length = 325 Score = 86.3 bits (212), Expect = 3e-17 Identities = 64/142 (45%), Positives = 83/142 (58%), Gaps = 19/142 (13%) Frame = +3 Query: 84 MTMDLIGGYGRADEQVAIQEAAAAGLRGMEHLILQLSRTGTSESSPVGSSEAPEQGKQQV 263 M +DL+ + + D+Q AIQEAA+ GL+ MEHLI LS PEQ + V Sbjct: 1 MAVDLMR-FPKIDDQTAIQEAASQGLQSMEHLIRVLSNR-------------PEQ-QHNV 45 Query: 264 DCREITDMTVSKFKKVISILNHRTGHARFRRGPVVA---------QSQGPAVSEP-APVR 413 DC EITD TVSKFK VIS+LN RTGHARFRRGPV + QSQ ++P AP+ Sbjct: 46 DCSEITDFTVSKFKTVISLLN-RTGHARFRRGPVHSTSSAASQKLQSQIVKNTQPEAPIV 104 Query: 414 ASSSR---------SMTLDFTR 452 +++ S+TLDF++ Sbjct: 105 RTTTNHPQIVPPPSSVTLDFSK 126
>WRK15_ARATH (O22176) Probable WRKY transcription factor 15 (WRKY DNA-binding| protein 15) Length = 317 Score = 68.6 bits (166), Expect = 7e-12 Identities = 54/145 (37%), Positives = 71/145 (48%), Gaps = 20/145 (13%) Frame = +3 Query: 75 VAMMTMDLIGGYGRADEQVAIQEAAAAGLRGMEHLILQLSRTGTSESSPVGSSEAPEQGK 254 V +MT + I G G + A+QEAAA+GL+ +E+ I +SR + P SS A Sbjct: 3 VELMTRNYISGVGA--DSFAVQEAAASGLKSIENFIGLMSRDSFNSDQP-SSSSASASAS 59 Query: 255 QQVDCRE----ITDMTVSKFKKVISILNH-RTGHARFRRGPVVAQS-------------Q 380 D D VSKFK+VIS+L+ RTGHARFRR PV S Q Sbjct: 60 AAADLESARNTTADAAVSKFKRVISLLDRTRTGHARFRRAPVHVISPVLLQEEPKTTPFQ 119 Query: 381 GPAVSEPAPVR--ASSSRSMTLDFT 449 P P +R + SS T+DF+ Sbjct: 120 SPLPPPPQMIRKGSFSSSMKTIDFS 144
>WRKY7_ARATH (Q9STX0) Probable WRKY transcription factor 7 (WRKY DNA-binding| protein 7) Length = 353 Score = 65.1 bits (157), Expect = 8e-11 Identities = 46/127 (36%), Positives = 62/127 (48%), Gaps = 15/127 (11%) Frame = +3 Query: 75 VAMMTMDLIGGYGRAD-----------EQVAIQEAAAAGLRGMEHLILQLSRTGTSESSP 221 V +M GG G D E A++EAA+AG+ G+E + Sbjct: 3 VELMMSSYSGGGGGGDGFPAIAAAAKMEDTALREAASAGIHGVEEFL-----------KL 51 Query: 222 VGSSEAPEQGKQQVDCREITDMTVSKFKKVISILNH-RTGHARFRRGPVVAQS---QGPA 389 +G S+ P + K Q + +TD+ V+ FKKVIS+L RTGHARFRR P Q+ Q P Sbjct: 52 IGQSQQPTE-KSQTEITAVTDVAVNSFKKVISLLGRSRTGHARFRRAPASTQTPFKQTPV 110 Query: 390 VSEPAPV 410 V E V Sbjct: 111 VEEEVEV 117
>Y319_THET8 (Q5SLH4) UPF0042 protein TTHA0319| Length = 273 Score = 32.3 bits (72), Expect = 0.58 Identities = 19/45 (42%), Positives = 24/45 (53%) Frame = +3 Query: 105 GYGRADEQVAIQEAAAAGLRGMEHLILQLSRTGTSESSPVGSSEA 239 G G ++A + A AGLRG HL++ TSE SP G EA Sbjct: 102 GAGNLMREIAEERRALAGLRGRAHLVVD-----TSELSPRGLKEA 141
>Y1664_THET2 (Q72H31) UPF0042 protein TT_C1664| Length = 273 Score = 32.3 bits (72), Expect = 0.58 Identities = 19/45 (42%), Positives = 24/45 (53%) Frame = +3 Query: 105 GYGRADEQVAIQEAAAAGLRGMEHLILQLSRTGTSESSPVGSSEA 239 G G ++A + A AGLRG HL++ TSE SP G EA Sbjct: 102 GAGNLMREIAEERRALAGLRGRAHLVVD-----TSELSPRGLKEA 141
>TREF1_HUMAN (Q96PN7) Transcriptional-regulating factor 1| (Transcriptional-regulating protein 132) (Zinc finger transcription factor TReP-132) (Zinc finger protein rapa) Length = 1200 Score = 31.2 bits (69), Expect = 1.3 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Frame = +3 Query: 138 QEAAAAGLRGMEHLILQLSRTGTSESS--PVGSSEAPEQGKQQVDCREITDMTVSKFKKV 311 Q+ + + + HL ++ G+ ESS P G+ K ++ C + + +FK + Sbjct: 469 QQLSPSAMWPQMHLPDGRAQPGSPESSGQPKGAFGEQFDAKNKLTC----SICLKEFKNL 524 Query: 312 ISILNHRTGHARFRRGPVVAQSQGPAVSEPAP 407 ++ H H R P + Q +G V P P Sbjct: 525 PALNGHMRSHGGMRASPNLKQEEGEKVLPPQP 556
>SPEG_BRARE (Q696W0) Striated muscle preferentially expressed protein kinase (EC| 2.7.11.1) Length = 2995 Score = 30.4 bits (67), Expect = 2.2 Identities = 19/69 (27%), Positives = 31/69 (44%) Frame = -2 Query: 250 PCSGASEDPTGELSLVPVRESCKMRCSIPRSPAAAASWIATCSSALPYPPIRSMVIIATA 71 P S S+ + + + P + KM+ P S A + +AT + +L P + S I T Sbjct: 2498 PYSNESDGVSIDTKVTPQHQPAKMKTHSPASFPAMTAAVATSAFSLSLPSVFSQSISPTP 2557 Query: 70 SASASQDKT 44 + SA T Sbjct: 2558 AQSADVSNT 2566
>YCW2_YEAST (P25382) Hypothetical WD-repeat protein YCR072C| Length = 515 Score = 30.4 bits (67), Expect = 2.2 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -2 Query: 412 LTGAGSDTAGPWDCATTGPRRNLA*PVRWL 323 +TGAG +TA WDC T P L W+ Sbjct: 160 VTGAGDNTARIWDCDTQTPMHTLKGHYNWV 189
>TRPE_METTM (P26940) Anthranilate synthase component 1 (EC 4.1.3.27)| (Anthranilate synthase component I) Length = 462 Score = 30.4 bits (67), Expect = 2.2 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Frame = +3 Query: 171 EHLIL-QLSRTGTSESSPVGSSEAPEQGKQQVDCREITDMTVSKFKKVISILNHRTGHAR 347 EHL+L L+R S GS E PE MT+ +F V IL+H TG R Sbjct: 301 EHLMLVDLARNDIGRVSEFGSVEVPEY------------MTIKRFSHVQHILSHVTGKLR 348
>WRK21_ARATH (O04336) Probable WRKY transcription factor 21 (WRKY DNA-binding| protein 21) Length = 380 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +3 Query: 279 TDMTVSKFKKVISILNHRTGHARFRR 356 T V +FK+V S+L+ GHARFRR Sbjct: 41 TREAVIRFKRVGSLLSSSVGHARFRR 66
>WRK39_ARATH (Q9SR07) Probable WRKY transcription factor 39 (WRKY DNA-binding| protein 39) Length = 330 Score = 29.6 bits (65), Expect = 3.8 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +3 Query: 279 TDMTVSKFKKVISILNHRTGHARFR 353 T VSKFK+V S+L GH +FR Sbjct: 36 TGEVVSKFKRVASLLTRGLGHGKFR 60
>VE2_HPV27 (P36789) Regulatory protein E2| Length = 388 Score = 29.6 bits (65), Expect = 3.8 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = -2 Query: 169 IPRSPAAAASWIATCSSALPYPPIRSMVIIATASASASQDKTGCSP 32 I + A+ +S AT S P PIR V A ASA+ +TG +P Sbjct: 195 IHHTSASVSSTQATASDDEPLSPIRLAVSPVPAPASAASARTGTAP 240
>CLPX_RHOBA (Q7UKU7) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 466 Score = 29.6 bits (65), Expect = 3.8 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 2/104 (1%) Frame = +3 Query: 81 MMTMDLIGGYGRADEQVAIQEAAAAGLRGMEHLILQLSRTGTSESSPVGSSEAPEQGKQQ 260 ++ +D + G + V+I + G++ +L++ + P G + PEQ Q Sbjct: 230 ILYIDEVDKIGSTNGNVSITRDVSG--EGVQQSLLKMLEGTVANVPPQGGRKHPEQQYIQ 287 Query: 261 VDCREITDMTVSKFKKVISILNHRTGHAR--FRRGPVVAQSQGP 386 +D I + F + I+ R GH F G V Q P Sbjct: 288 LDTSNILFICGGTFVGIEEIIRRRLGHRTLGFGEGANVRNEQTP 331
>CLPX_FRATT (Q5NH46) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 417 Score = 29.6 bits (65), Expect = 3.8 Identities = 20/81 (24%), Positives = 33/81 (40%) Frame = +3 Query: 90 MDLIGGYGRADEQVAIQEAAAAGLRGMEHLILQLSRTGTSESSPVGSSEAPEQGKQQVDC 269 +D I R E +I + G++ +L+L S P G + P Q QVD Sbjct: 176 IDEIDKIARKSESTSITRDVSG--EGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQVDT 233 Query: 270 REITDMTVSKFKKVISILNHR 332 +I + F + ++ HR Sbjct: 234 SDILFICGGAFAGIEKVIKHR 254
>CLPX_RICCN (Q92GQ4) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 425 Score = 29.3 bits (64), Expect = 4.9 Identities = 15/60 (25%), Positives = 28/60 (46%) Frame = +3 Query: 165 GMEHLILQLSRTGTSESSPVGSSEAPEQGKQQVDCREITDMTVSKFKKVISILNHRTGHA 344 G++ +L++ + P G + P+Q Q+D I + F + SI+ RT H+ Sbjct: 203 GVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNILFICGGAFMGIDSIITSRTNHS 262
>LRCH1_MOUSE (P62046) Leucine-rich repeats and calponin homology| domain-containing protein 1 (Calponin homology domain-containing protein 1) Length = 709 Score = 29.3 bits (64), Expect = 4.9 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -1 Query: 200 CPGELQDEVLHPAQPRRRRLLDCHLLVRP 114 CP E+Q + + PRR +LL H+ +RP Sbjct: 541 CPEEVQGSLQAESSPRRPQLLSRHVFLRP 569
>SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1| Length = 881 Score = 28.9 bits (63), Expect = 6.4 Identities = 18/75 (24%), Positives = 32/75 (42%) Frame = -2 Query: 226 PTGELSLVPVRESCKMRCSIPRSPAAAASWIATCSSALPYPPIRSMVIIATASASASQDK 47 PT L+ P R++ ++R P P+A AT S + P +++ A+ Sbjct: 753 PTQSLASPPARDALQLRSQDPTPPSAPQE--ATEGSKVTEPSAPCQALVSIGDLQATFHG 810 Query: 46 TGCSPDNENGARRSP 2 +P + + A R P Sbjct: 811 IRSAPSSSDSATRDP 825
>CLPX_NOCFA (Q5Z061) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 426 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/59 (23%), Positives = 27/59 (45%) Frame = +3 Query: 165 GMEHLILQLSRTGTSESSPVGSSEAPEQGKQQVDCREITDMTVSKFKKVISILNHRTGH 341 G++ +L++ + P G + P Q Q+D + + F + I++ RTGH Sbjct: 208 GVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEKIISDRTGH 266
>HELS_AERPE (Q9YFQ8) Putative ski2-type helicase (EC 3.6.1.-)| Length = 702 Score = 28.9 bits (63), Expect = 6.4 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +3 Query: 93 DLIGGYGRADEQVAIQEAAAAGLRGMEHLIL 185 DLI GY RA + E+ AGLRG+ H IL Sbjct: 370 DLISGYIRAPPERV--ESRLAGLRGLRHFIL 398
>TRPE_METTH (O27692) Anthranilate synthase component 1 (EC 4.1.3.27)| (Anthranilate synthase component I) Length = 464 Score = 28.5 bits (62), Expect = 8.4 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Frame = +3 Query: 171 EHLIL-QLSRTGTSESSPVGSSEAPEQGKQQVDCREITDMTVSKFKKVISILNHRTGHAR 347 EHL+L L+R S G+ + PE MT+ +F V IL+H TG R Sbjct: 298 EHLMLVDLARNDLGRISEFGTVQVPEY------------MTIRRFSHVQHILSHVTG--R 343 Query: 348 FRRG 359 R+G Sbjct: 344 LRKG 347
>CLPX_DEIRA (Q9RSZ6) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 403 Score = 28.5 bits (62), Expect = 8.4 Identities = 20/82 (24%), Positives = 35/82 (42%) Frame = +3 Query: 90 MDLIGGYGRADEQVAIQEAAAAGLRGMEHLILQLSRTGTSESSPVGSSEAPEQGKQQVDC 269 +D I R E +I + G++ +L++ ++ P G + P+Q QVD Sbjct: 175 VDEIDKIARKSEGTSITRDVSG--EGVQQALLKIIEGTVAQVPPQGGRKHPQQELVQVDT 232 Query: 270 REITDMTVSKFKKVISILNHRT 335 R I + F+ + I RT Sbjct: 233 RNILFIVGGAFESMSEIARART 254
>CLPX_LEPIN (Q8F353) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 420 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/88 (21%), Positives = 38/88 (43%) Frame = +3 Query: 75 VAMMTMDLIGGYGRADEQVAIQEAAAAGLRGMEHLILQLSRTGTSESSPVGSSEAPEQGK 254 V ++ +D + R + +I + G++ +L++ + P G + P Q Sbjct: 180 VGIIYIDEVDKIARKSDSASITRDVSG--EGVQQALLKIIEGTVANVPPQGGRKHPHQEY 237 Query: 255 QQVDCREITDMTVSKFKKVISILNHRTG 338 QVD + I + F + +I+ RTG Sbjct: 238 LQVDTKNILFILGGAFVDLPNIIKSRTG 265
>CLPX_LEPIC (Q72SG5) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 420 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/88 (21%), Positives = 38/88 (43%) Frame = +3 Query: 75 VAMMTMDLIGGYGRADEQVAIQEAAAAGLRGMEHLILQLSRTGTSESSPVGSSEAPEQGK 254 V ++ +D + R + +I + G++ +L++ + P G + P Q Sbjct: 180 VGIIYIDEVDKIARKSDSASITRDVSG--EGVQQALLKIIEGTVANVPPQGGRKHPHQEY 237 Query: 255 QQVDCREITDMTVSKFKKVISILNHRTG 338 QVD + I + F + +I+ RTG Sbjct: 238 LQVDTKNILFILGGAFVDLPNIIKSRTG 265 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,567,079 Number of Sequences: 219361 Number of extensions: 902252 Number of successful extensions: 4070 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3894 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4056 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
