ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart60f09 |
|---|---|
| Clone Library Name | barley_pub |
>VDAC_PEA (P42054) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 275 Score = 109 bits (273), Expect = 3e-24 Identities = 54/122 (44%), Positives = 73/122 (59%) Frame = +1 Query: 97 KGPGLFTDIGKKAKDLLTRDYTYDQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYKY 276 KGPGL+TDIGKKA+DLL +DY D+K KKG L+ DV + K Sbjct: 2 KGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKN 61 Query: 277 KNTLVDVKVDTESNISTTLTVLDVLPSTKLVTSVKFPDYNAGKVEVQYFHDKCTFAAAVG 456 KN D+KVDT SN+ TT+TV + P K + S K P+ +GKVE+QY H+ +++VG Sbjct: 62 KNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVG 121 Query: 457 MK 462 +K Sbjct: 122 LK 123
>VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin 2| (Voltage-dependent anion-selective channel protein 2) (VDAC 2) Length = 273 Score = 108 bits (271), Expect = 5e-24 Identities = 54/120 (45%), Positives = 69/120 (57%) Frame = +1 Query: 97 KGPGLFTDIGKKAKDLLTRDYTYDQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYKY 276 KGPGL+T+IGKKA+DLL RDY DQK KG L+ DVA+ K Sbjct: 2 KGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKN 61 Query: 277 KNTLVDVKVDTESNISTTLTVLDVLPSTKLVTSVKFPDYNAGKVEVQYFHDKCTFAAAVG 456 N DVKV T+S++ TTLT + P K++ K PD+ +GK EVQYFHD + +VG Sbjct: 62 NNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVG 121
>VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 34) Length = 275 Score = 108 bits (271), Expect = 5e-24 Identities = 53/121 (43%), Positives = 69/121 (57%) Frame = +1 Query: 97 KGPGLFTDIGKKAKDLLTRDYTYDQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYKY 276 KGPGL+T+IGKKA+DLL +DY D K KKG L+ DV + K Sbjct: 2 KGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKN 61 Query: 277 KNTLVDVKVDTESNISTTLTVLDVLPSTKLVTSVKFPDYNAGKVEVQYFHDKCTFAAAVG 456 KN D+KVDT SN+ TT+TV + P K + S + PD +GK+EVQY HD +VG Sbjct: 62 KNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVG 121 Query: 457 M 459 + Sbjct: 122 L 122
>VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 36) Length = 275 Score = 107 bits (266), Expect = 2e-23 Identities = 53/121 (43%), Positives = 69/121 (57%) Frame = +1 Query: 97 KGPGLFTDIGKKAKDLLTRDYTYDQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYKY 276 KGPGL++DIGKKA+DLL RDY D K KKG L+ DV++ K Sbjct: 2 KGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKN 61 Query: 277 KNTLVDVKVDTESNISTTLTVLDVLPSTKLVTSVKFPDYNAGKVEVQYFHDKCTFAAAVG 456 KN DVKVDT SN+ TT+TV + P K + S PD +GKVE+QY H+ ++G Sbjct: 62 KNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIG 121 Query: 457 M 459 + Sbjct: 122 L 122
>VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 273 Score = 96.3 bits (238), Expect = 3e-20 Identities = 48/120 (40%), Positives = 67/120 (55%) Frame = +1 Query: 100 GPGLFTDIGKKAKDLLTRDYTYDQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYKYK 279 GPGL+ +IGKKA+DLL RDY D K KK L ++ S K K Sbjct: 2 GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNK 61 Query: 280 NTLVDVKVDTESNISTTLTVLDVLPSTKLVTSVKFPDYNAGKVEVQYFHDKCTFAAAVGM 459 N VDVK +++SN+ TT+TV ++ P K + S PD +GK E+QY HD +A++G+ Sbjct: 62 NITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGL 121
>VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin 1| (Voltage-dependent anion-selective channel protein 1) (VDAC 1) Length = 275 Score = 95.5 bits (236), Expect = 6e-20 Identities = 49/121 (40%), Positives = 67/121 (55%) Frame = +1 Query: 97 KGPGLFTDIGKKAKDLLTRDYTYDQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYKY 276 KGPGL+T+IGKKA+DLL +D+ DQK KKG L DVA + Sbjct: 2 KGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRR 61 Query: 277 KNTLVDVKVDTESNISTTLTVLDVLPSTKLVTSVKFPDYNAGKVEVQYFHDKCTFAAAVG 456 KN D+KV T+S T TV + P + + S K PD N+GKVE+QY H+ + ++G Sbjct: 62 KNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMG 121 Query: 457 M 459 + Sbjct: 122 L 122
>VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 275 Score = 93.2 bits (230), Expect = 3e-19 Identities = 50/121 (41%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Frame = +1 Query: 100 GPGLFTDIGKKAKDLLTRDYTYDQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYKYK 279 GPGL++ IGKKAKDLL RDY D K KK L ++ S K K Sbjct: 3 GPGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNK 62 Query: 280 NTLVDVKVDTESNISTTLTVLDV-LPSTKLVTSVKFPDYNAGKVEVQYFHDKCTFAAAVG 456 N VDVK ++ SN+ TT+T D+ P K + S PD +GKVE+QY HD A++G Sbjct: 63 NITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIG 122 Query: 457 M 459 + Sbjct: 123 L 123
>VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 277 Score = 73.6 bits (179), Expect = 2e-13 Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Frame = +1 Query: 106 GLFTDIGKKAKDLLTRDYTYDQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYKYKNT 285 GL+TDIGKK +DLL +DY QK +K ++ + K K Sbjct: 6 GLYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKL 65 Query: 286 LVDVKVDTESNISTTLTVLDV-LPSTKLVTSVKFPDYNAGKVEVQYFHDKCTFAAAVGM 459 VDVK ++ES++ TT+TV + P K + ++ PD +GK+E QY H+ A+VG+ Sbjct: 66 TVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGL 124
>ATS12_MOUSE (Q811B3) ADAMTS-12 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 12) (ADAM-TS 12) (ADAM-TS12) Length = 1600 Score = 31.6 bits (70), Expect = 1.1 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 445 QQKCICHGSIAPPPFQHCNQET*QTSQAL 359 Q +C+C + PP FQ CNQ+ + S L Sbjct: 1515 QDQCLCDHQVKPPEFQTCNQQACRKSADL 1543
>VDAC_DROME (Q94920) Voltage-dependent anion-selective channel (Porin) (DmVDAC)| Length = 281 Score = 30.0 bits (66), Expect = 3.1 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 10/119 (8%) Frame = +1 Query: 103 PGLFTDIGKKAKDLLTRDYTY---DQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYK 273 P ++D+GK+A+D+ ++ Y + L ++ G + + YK Sbjct: 2 PPSYSDLGKQARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQESGKVFGSLETKYK 61 Query: 274 YKN---TLVDVKVDTESNISTTLTVLD-VLPSTKLVTSVKFPDYNA---GKVEVQYFHD 429 K+ TL + K +T++ + T + V D +L KL F + GK +V Y H+ Sbjct: 62 VKDYGLTLTE-KWNTDNTLFTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHE 119
>RHPN2_MOUSE (Q8BWR8) Rhophilin-2 (GTP-Rho-binding protein 2)| Length = 686 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/60 (30%), Positives = 28/60 (46%) Frame = +1 Query: 253 DVASAYKYKNTLVDVKVDTESNISTTLTVLDVLPSTKLVTSVKFPDYNAGKVEVQYFHDK 432 DV SA + L + + ++ + DVLP T+ + FPD++ KV V F K Sbjct: 441 DVLSAAHQRTQLKHTQHREDDDLLNLIDAPDVLPKTEREVKITFPDFS--KVTVTDFFQK 498 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,498,571 Number of Sequences: 219361 Number of extensions: 913132 Number of successful extensions: 2667 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2615 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2664 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
