ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart60f04 |
|---|---|
| Clone Library Name | barley_pub |
>GLGL1_HORVU (P30524) Glucose-1-phosphate adenylyltransferase large subunit 1,| chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase) (BEPL) Length = 523 Score = 168 bits (426), Expect = 5e-42 Identities = 84/84 (100%), Positives = 84/84 (100%) Frame = +3 Query: 183 MSSMQFSSVLPLEGKACVSPVRREGSACERLKIGDSSSIRHERASRRMCNGGARGPAATG 362 MSSMQFSSVLPLEGKACVSPVRREGSACERLKIGDSSSIRHERASRRMCNGGARGPAATG Sbjct: 1 MSSMQFSSVLPLEGKACVSPVRREGSACERLKIGDSSSIRHERASRRMCNGGARGPAATG 60 Query: 363 AQCVLTSDASPADTLVLRTSFRRN 434 AQCVLTSDASPADTLVLRTSFRRN Sbjct: 61 AQCVLTSDASPADTLVLRTSFRRN 84
>GLGL2_WHEAT (P12299) Glucose-1-phosphate adenylyltransferase large subunit,| chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase) Length = 522 Score = 157 bits (398), Expect = 8e-39 Identities = 80/84 (95%), Positives = 82/84 (97%) Frame = +3 Query: 183 MSSMQFSSVLPLEGKACVSPVRREGSACERLKIGDSSSIRHERASRRMCNGGARGPAATG 362 MSSMQFSSVLPLEGKAC+SPVRREGSA ERLK+GDSSSIRHERASRRMCNGG RGPAATG Sbjct: 1 MSSMQFSSVLPLEGKACISPVRREGSASERLKVGDSSSIRHERASRRMCNGG-RGPAATG 59 Query: 363 AQCVLTSDASPADTLVLRTSFRRN 434 AQCVLTSDASPADTLVLRTSFRRN Sbjct: 60 AQCVLTSDASPADTLVLRTSFRRN 83
>GLGL2_MAIZE (P55234) Glucose-1-phosphate adenylyltransferase large subunit 2,| chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase) Length = 521 Score = 75.9 bits (185), Expect = 4e-14 Identities = 52/84 (61%), Positives = 58/84 (69%), Gaps = 3/84 (3%) Frame = +3 Query: 192 MQFSSVLPLEGKACVSPVRR--EGSACERLKIGDSSSIRHERASRRMCNGGARGPAATGA 365 MQFSSVLPLEGKAC+SPVRR G ER++I + SIR +A RRMC ARG A + Sbjct: 1 MQFSSVLPLEGKACMSPVRRGSGGYGSERMRI-NCCSIRRNKALRRMC-FSARG-AVSST 57 Query: 366 QCVLTSDASPADTLVL-RTSFRRN 434 QCVLTSDA P DTLV FRRN Sbjct: 58 QCVLTSDAGP-DTLVRPNHPFRRN 80
>GLGL3_WHEAT (P12300) Glucose-1-phosphate adenylyltransferase large subunit,| chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase) (Fragment) Length = 500 Score = 31.6 bits (70), Expect(2) = 0.006 Identities = 13/15 (86%), Positives = 14/15 (93%) Frame = +1 Query: 391 ARPTPLFSGRPSGGI 435 AR TPLFSGRPSGG+ Sbjct: 51 ARQTPLFSGRPSGGL 65 Score = 26.2 bits (56), Expect(2) = 0.006 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +2 Query: 239 PSQERGIGLRAPQDRGQQQHQARE 310 P E LRAPQ +QHQAR+ Sbjct: 4 PPSESRAPLRAPQRSATRQHQARQ 27
>GLGL1_MAIZE (P55241) Glucose-1-phosphate adenylyltransferase large subunit 1,| chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase) (Shrunken-2) Length = 516 Score = 35.0 bits (79), Expect = 0.079 Identities = 22/61 (36%), Positives = 28/61 (45%) Frame = +3 Query: 252 EGSACERLKIGDSSSIRHERASRRMCNGGARGPAATGAQCVLTSDASPADTLVLRTSFRR 431 EG +RL+ + E+A R C GG A QC+LTSDA P S R+ Sbjct: 20 EGDGIDRLEKLSIGGRKQEKALRNRCFGGR---VAATTQCILTSDACPETLHSQTQSSRK 76 Query: 432 N 434 N Sbjct: 77 N 77
>Y3401_MYCTU (Q50724) Hypothetical glycosyl hydrolase Rv3401/MT3509 (EC 3.2.1.-)| Length = 786 Score = 32.7 bits (73), Expect = 0.39 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = +2 Query: 122 PVATPSIPHPAVPGSCRWTANVIDAVQQRAAP-GGQGVRFP 241 PV T + PH AV + RW A+ +D ++RAA G +G FP Sbjct: 369 PVLTYTAPH-AVADALRWRASTLDLAKERAAELGLEGAAFP 408
>FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chorion membrane| protein) Length = 2038 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 4/41 (9%) Frame = +2 Query: 206 RAAPGGQGVRFPS----QERGIGLRAPQDRGQQQHQARESV 316 +A+PGGQG P+ Q+R RA Q R +Q+ + RE++ Sbjct: 1978 KASPGGQGQSSPAQQSPQDRAAAKRAEQRRAEQERRRREAL 2018
>WISP2_HUMAN (O76076) WNT1-inducible signaling pathway protein 2 precursor| (WISP-2) (Connective tissue growth factor-like protein) (CTGF-L) (Connective tissue growth factor-related protein 58) Length = 250 Score = 31.2 bits (69), Expect = 1.1 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Frame = +3 Query: 210 LPLEGKACVSP-VRREGSACERLKIGDSSSIRHERASRRMCNGGARGPAATGAQCVLTSD 386 L L+G C RR G C++L + D+S +C GA GP GA C+L D Sbjct: 45 LVLDGCGCCRVCARRLGEPCDQLHVCDASQ-------GLVCQPGA-GPGGRGALCLLAED 96 Query: 387 ASPAD 401 S + Sbjct: 97 DSSCE 101
>MED15_YEAST (P19659) RNA polymerase II mediator complex subunit 15 (Galactose| metabolism protein 11) (Basal expression activator protein 1) (Autonomous replication regulatory protein 3) (Defective silencing suppressor protein 4) (Ty insertion suppressor Length = 1081 Score = 30.8 bits (68), Expect = 1.5 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 5/109 (4%) Frame = +2 Query: 125 VATPSIPHPAVPGSCRWTANVIDAVQQRAAPGGQG-----VRFPSQERGIGLRAPQDRGQ 289 +AT + P+ A + ++ + +QQ+ Q + +Q + +A Q + Q Sbjct: 393 IATSATPNAAAFSQQQNASSKLYQMQQQQQAQAQAQAQAQAQAQAQAQAQAAQAAQAQAQ 452 Query: 290 QQHQARESVQEDVQXXXXXXXXXXCAVRAHLRRQPGRHPCSPDVLPEEL 436 Q QA+ Q Q +AH + QP + P P L Sbjct: 453 AQAQAQAQAQAQAQAQAQAQAQAQAQAQAHAQHQPSQQPQQAQQQPNPL 501
>JPH2_MOUSE (Q9ET78) Junctophilin-2 (Junctophilin type 2) (JP-2)| Length = 696 Score = 30.8 bits (68), Expect = 1.5 Identities = 20/66 (30%), Positives = 30/66 (45%) Frame = +2 Query: 122 PVATPSIPHPAVPGSCRWTANVIDAVQQRAAPGGQGVRFPSQERGIGLRAPQDRGQQQHQ 301 P TP P PG+ + ++ PGG+G R + G G R+P R +H Sbjct: 480 PAGTPPQPKRPRPGASK--DGLLSPGSWNGEPGGEGSRPATPSDGAGRRSPA-RPASEHM 536 Query: 302 ARESVQ 319 A E++Q Sbjct: 537 AIEALQ 542
>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)| Length = 3124 Score = 30.4 bits (67), Expect = 1.9 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +2 Query: 149 PAVPGSCRWTANVIDAVQQRAAPGGQGVRFPSQERGI 259 PA+P +C T + + PGG G + P ERG+ Sbjct: 2737 PALPNACTCTQDSVGPPGPPGPPGGPGAKGPRGERGL 2773
>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor| Length = 3063 Score = 29.3 bits (64), Expect = 4.3 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 14/78 (17%) Frame = +2 Query: 95 IRSYSSVACPVATP-----SIPH-------PAVPGSCRWTANVIDAVQQRAAPGGQGVRF 238 I+S+ V PV T IP PA P SC T + + GG G + Sbjct: 2703 IQSFDIVCSPVWTSRDRCCDIPSRRDEGKCPAFPNSCTCTQDSVGPPGPPGPAGGPGAKG 2762 Query: 239 PSQERGI--GLRAPQDRG 286 P ERGI + P RG Sbjct: 2763 PRGERGISGAIGPPGPRG 2780
>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor| Length = 1806 Score = 29.3 bits (64), Expect = 4.3 Identities = 20/62 (32%), Positives = 27/62 (43%) Frame = +2 Query: 143 PHPAVPGSCRWTANVIDAVQQRAAPGGQGVRFPSQERGIGLRAPQDRGQQQHQARESVQE 322 P P R +A + R PG QG P+ E+G AP ++G Q R+ VQ Sbjct: 1053 PGPVGSPGERGSAGTAGPIGLRGRPGPQGPPGPAGEKG----APGEKGPQGPAGRDGVQG 1108 Query: 323 DV 328 V Sbjct: 1109 PV 1110
>CDK9_SCHPO (Q96WV9) Serine/threonine-protein kinase cdk9 (EC 2.7.11.1)| (Cyclin-dependent kinase cdk9) Length = 591 Score = 28.9 bits (63), Expect = 5.7 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +2 Query: 182 NVIDAVQQRAAPGGQGVRFPSQERGIGLRAPQDRGQQQHQARESVQ 319 N ++ + GQ P Q+R LR P D G+Q Q+ +S Q Sbjct: 457 NAMNQTSNHSHADGQRYYRPEQDRSQRLRNPSDYGRQGRQSSQSQQ 502
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 28.9 bits (63), Expect = 5.7 Identities = 23/56 (41%), Positives = 27/56 (48%) Frame = +3 Query: 246 RREGSACERLKIGDSSSIRHERASRRMCNGGARGPAATGAQCVLTSDASPADTLVL 413 RR A R+K G SSS RR GGA G G + L S AS +TLV+ Sbjct: 1016 RRSSPARSRIKQGRSSSF----PGRRRPRGGAHGGRGRG-RARLKSTASSIETLVV 1066
>VPX_HV2RO (P06939) VPX protein (X ORF protein) (Viral accessory protein)| Length = 112 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -3 Query: 185 H*QSTCNCRGRRGEGSTGWRPG 120 H + C C GR G G GWRPG Sbjct: 82 HVRKGCTCLGR-GHGPGGWRPG 102
>VPX_HV2D1 (P17760) VPX protein (X ORF protein) (Viral accessory protein)| Length = 112 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -3 Query: 185 H*QSTCNCRGRRGEGSTGWRPG 120 H + C C GR G G GWRPG Sbjct: 82 HFKKGCTCLGR-GHGPGGWRPG 102
>COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor| Length = 3119 Score = 28.5 bits (62), Expect = 7.4 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 12/67 (17%) Frame = +2 Query: 95 IRSYSSVACPVATP-----SIPH-------PAVPGSCRWTANVIDAVQQRAAPGGQGVRF 238 I+S+ V PV T IP PA+P +C T + + GG G + Sbjct: 2708 IQSFDIVCSPVWTSRDRCCDIPSRRDEAKCPALPNACTCTQDSVGPPGPPGPAGGPGAKG 2767 Query: 239 PSQERGI 259 P ERGI Sbjct: 2768 PRGERGI 2774
>AGRN_DISOM (Q90404) Agrin (Fragment)| Length = 1328 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +3 Query: 207 VLPLEGKACVSPVRREGSACERL 275 VLP G C P+ REG CER+ Sbjct: 882 VLPEGGSKCECPMGREGELCERV 904
>AGRN_CHICK (P31696) Agrin (Fragment)| Length = 1955 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +3 Query: 207 VLPLEGKACVSPVRREGSACERL 275 VLP G C P+ REG CER+ Sbjct: 1502 VLPEGGAMCACPMGREGEFCERV 1524
>LFNG_MOUSE (O09010) Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe| (EC 2.4.1.222) (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Length = 378 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = -1 Query: 271 RSQADPSLLTGETHALPSRGSTLLNCIDDISSPPATA 161 R+ DP +LT E H+L S L D PP A Sbjct: 58 RAAVDPGVLTREVHSLSEYFSLLTRARRDADPPPGVA 94
>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)| Length = 704 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +2 Query: 107 SSVACPVATPSIPHPAVPGSCRWTANVIDAVQQRAA 214 +S A PVA+P+ P P G + +++ +AV+Q A Sbjct: 54 ASTAAPVASPAAPSPGSSGGGGFFSSLSNAVKQTTA 89
>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)| Length = 706 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +2 Query: 107 SSVACPVATPSIPHPAVPGSCRWTANVIDAVQQRAA 214 +S A PVA+P+ P P G + +++ +AV+Q A Sbjct: 54 ASTAAPVASPAAPSPGSSGGGGFFSSLSNAVKQTTA 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,864,152 Number of Sequences: 219361 Number of extensions: 759221 Number of successful extensions: 2601 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2465 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2594 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
