ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart60f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YG54_YEAST (P53309) Hypothetical 64.3 kDa protein in PFK1-TDS4 i... 30 1.4
2ANKR5_MOUSE (Q9D2J7) Ankyrin repeat domain-containing protein 5 28 4.1
3HN1L_MOUSE (Q6PGH2) Hematological and neurological expressed 1-l... 27 9.1

>YG54_YEAST (P53309) Hypothetical 64.3 kDa protein in PFK1-TDS4 intergenic|
           region
          Length = 568

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 378 RLGGRNPTELDLSGRDRRLEGFQNAPNP 295
           + G  NP  L+   R+++ + FQN+PNP
Sbjct: 448 KTGSNNPFSLENIAREQQQQNFQNSPNP 475



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>ANKR5_MOUSE (Q9D2J7) Ankyrin repeat domain-containing protein 5|
          Length = 775

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -1

Query: 364 KSNRIGSFGPRQTPRGIPKRPQ 299
           KS  +GSFGP++  RG+ K+P+
Sbjct: 404 KSYVLGSFGPKKKKRGLGKKPR 425



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>HN1L_MOUSE (Q6PGH2) Hematological and neurological expressed 1-like protein|
           (HN1-like protein)
          Length = 190

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -1

Query: 364 KSNRIGS--FGPRQTPRGIPKRPQSKAG 287
           K NR+ S  FGP + P+ IPKR     G
Sbjct: 39  KPNRMASNIFGPTEEPKNIPKRTNPPGG 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,222,334
Number of Sequences: 219361
Number of extensions: 577750
Number of successful extensions: 1828
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1828
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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