ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart60f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC124480.5| Mus musculus BAC clone RP24-117B21 from chromosom... 48 0.021
2ref|XM_701814.1| PREDICTED: Danio rerio similar to Otp protein, ... 44 0.33
3ref|XM_678094.1| PREDICTED: Danio rerio similar to Otp protein, ... 44 0.33
4gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.3
5emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right termin... 42 1.3
6emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left termina... 42 1.3
7emb|AL840625.9| Mouse DNA sequence from clone RP23-343F17 on chr... 42 1.3
8emb|AL589902.18| Mouse DNA sequence from clone RP23-108D12 on ch... 42 1.3
9gb|AC152953.1| Mus musculus 10 BAC RP23-403E19 (Roswell Park Can... 40 5.1
10ref|XM_481312.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.1
11ref|XM_481311.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.1
12ref|XM_507187.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.1
13gb|AC113007.11| Mus musculus chromosome 3, clone RP23-349H13, co... 40 5.1
14gb|AY217089.1| Mus musculus neuronal transcription factor BRN3a ... 40 5.1
15gb|AC162920.2| Mus musculus BAC clone RP23-357C16 from chromosom... 40 5.1
16ref|XM_975897.1| PREDICTED: Mus musculus POU domain, class 4, tr... 40 5.1
17ref|XM_799917.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 5.1
18gb|AC121997.3| Mus musculus BAC clone RP24-312G4 from chromosome... 40 5.1
19gb|AC122525.4| Mus musculus BAC clone RP24-496O17 from chromosom... 40 5.1
20ref|XM_862186.1| PREDICTED: Canis familiaris similar to LIM doma... 40 5.1
21ref|XM_537086.2| PREDICTED: Canis familiaris similar to LIM doma... 40 5.1
22emb|AL357894.6| Human DNA sequence from clone RP11-576P23 on chr... 40 5.1
23emb|AL035694.8|HS33L1 Human DNA sequence from clone RP1-33L1 on ... 40 5.1
24emb|AL606634.2|OSJN00066 Oryza sativa genomic DNA, chromosome 4,... 40 5.1
25dbj|AB243405.1| Streptomyces albulus chloramphenicol resistance ... 40 5.1
26dbj|AB183864.1| Homo sapiens DGKK mRNA for diacylglycerol kinase... 40 5.1
27ref|NM_001013742.1| Homo sapiens diacylglycerol kinase, kappa (D... 40 5.1
28gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nippon... 40 5.1
29gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.1
30dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
31dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
32dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
33dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
34dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
35gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold 40 5.1
36dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
37dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
38dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
39dbj|AP005513.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
40dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
41gb|AY596082.1| Aegla ringueleti voucher KACa0473 28S large subun... 40 5.1
42gb|AY596081.1| Aegla ringueleti voucher KACa0469 28S large subun... 40 5.1
43gb|AY596078.1| Aegla jujuyana voucher KACa0447 28S large subunit... 40 5.1
44gb|AY596077.1| Aegla jujuyana voucher KACa0434 28S large subunit... 40 5.1
45gb|AY596074.1| Aegla scamosa voucher KACa0416 28S large subunit ... 40 5.1
46gb|AY596073.1| Aegla scamosa voucher KACaA404 28S large subunit ... 40 5.1
47gb|AY596072.1| Aegla scamosa voucher KACaA395 28S large subunit ... 40 5.1
48gb|AY596069.1| Aegla platensis voucher KACa0421 28S large subuni... 40 5.1
49gb|AY596068.1| Aegla platensis voucher KACa0420 28S large subuni... 40 5.1
50gb|AY596065.1| Aegla strinatii voucher KACa0405 28S large subuni... 40 5.1
51gb|AY596064.1| Aegla strinatii voucher KACaB404 28S large subuni... 40 5.1
52gb|AY596061.1| Aegla cavernicola voucher KACa0412 28S large subu... 40 5.1
53gb|AY596060.1| Aegla cavernicola voucher KACa0400 28S large subu... 40 5.1
54gb|AY596053.1| Aegla platensis voucher KACa0384 28S large subuni... 40 5.1
55gb|AY596052.1| Aegla platensis voucher KACa0383 28S large subuni... 40 5.1
56gb|AY596017.1| Aegla parva voucher KACa0262 28S large subunit ri... 40 5.1
57gb|AY596016.1| Aegla parva voucher KACa0260 28S large subunit ri... 40 5.1
58gb|AY595985.1| Aegla strinatii voucher KACa0117 28S large subuni... 40 5.1
59gb|AY595976.1| Aegla platensis voucher KACapl03 28S large subuni... 40 5.1
60gb|AY595975.1| Aegla platensis voucher KACapl02 28S large subuni... 40 5.1
61gb|AY595974.1| Aegla platensis voucher KACapl01 28S large subuni... 40 5.1
62dbj|AP005097.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
63dbj|AK106281.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
64dbj|AK106365.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
65dbj|AK072238.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
66gb|AC142557.3| Cercopithecus aethiops clone CH252-402M4, complet... 40 5.1
67gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
68gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
69emb|AL954156.3|CNS08CCU Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.1
70emb|AL662960.3|OSJN00162 Oryza sativa genomic DNA, chromosome 4,... 40 5.1
71emb|AL731592.2|OSJN00242 Oryza sativa genomic DNA, chromosome 4,... 40 5.1
72emb|AL669851.8| Mouse DNA sequence from clone RP23-18K13 on chro... 40 5.1 
>gb|AC124480.5| Mus musculus BAC clone RP24-117B21 from chromosome 5, complete sequence
          Length = 189616

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 120   cgcccgtccgcccgctcgctcgcc 143
             ||||||||||||||||||||||||
Sbjct: 77700 cgcccgtccgcccgctcgctcgcc 77677
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>ref|XM_701814.1| PREDICTED: Danio rerio similar to Otp protein, transcript variant 2
           (LOC560759), mRNA
          Length = 1709

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 70  gcccgcgtcgctctccggcccc 91
           ||||||||||||||||||||||
Sbjct: 816 gcccgcgtcgctctccggcccc 837
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>ref|XM_678094.1| PREDICTED: Danio rerio similar to Otp protein, transcript variant 1
           (LOC560759), mRNA
          Length = 1773

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 70  gcccgcgtcgctctccggcccc 91
           ||||||||||||||||||||||
Sbjct: 880 gcccgcgtcgctctccggcccc 901
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 120     cgcccgtccgcccgctcgctcgccg 144
               ||||||||||||||| |||||||||
Sbjct: 4099583 cgcccgtccgcccgcccgctcgccg 4099559
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>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat
          Length = 243019

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 103    acacccgcacgcacgcacgcccgtccgcc 131
              |||||||||||| |||||||||| |||||
Sbjct: 186946 acacccgcacgcccgcacgcccgcccgcc 186974
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>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat
          Length = 273746

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 103    acacccgcacgcacgcacgcccgtccgcc 131
              |||||||||||| |||||||||| |||||
Sbjct: 186946 acacccgcacgcccgcacgcccgcccgcc 186974
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>emb|AL840625.9| Mouse DNA sequence from clone RP23-343F17 on chromosome 4, complete
              sequence
          Length = 164277

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 118    cacgcccgtccgcccgctcgctcgc 142
              |||||||| ||||||||||||||||
Sbjct: 142230 cacgcccgcccgcccgctcgctcgc 142254
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>emb|AL589902.18| Mouse DNA sequence from clone RP23-108D12 on chromosome 2, complete
             sequence
          Length = 200325

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 102   tacacccgcacgcacgcacgcccgtccgcccgc 134
             ||||| |||||||||||||||||| | ||||||
Sbjct: 80232 tacacacgcacgcacgcacgcccgcctgcccgc 80264
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>gb|AC152953.1| Mus musculus 10 BAC RP23-403E19 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 211343

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 120   cgcccgtccgcccgctcgctcgcc 143
             |||||| |||||||||||||||||
Sbjct: 36044 cgcccgcccgcccgctcgctcgcc 36067
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>ref|XM_481312.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1510

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 cacccgcacgcacgcacgcc 123
           ||||||||||||||||||||
Sbjct: 113 cacccgcacgcacgcacgcc 94
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>ref|XM_481311.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1457

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 cacccgcacgcacgcacgcc 123
           ||||||||||||||||||||
Sbjct: 113 cacccgcacgcacgcacgcc 94
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>ref|XM_507187.1| PREDICTED Oryza sativa (japonica cultivar-group), B1114E07.25-1
           mRNA
          Length = 1469

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 cacccgcacgcacgcacgcc 123
           ||||||||||||||||||||
Sbjct: 144 cacccgcacgcacgcacgcc 125
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>gb|AC113007.11| Mus musculus chromosome 3, clone RP23-349H13, complete sequence
          Length = 180852

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 120   cgcccgtccgcccgctcgctcgcc 143
             |||||| |||||||||||||||||
Sbjct: 54221 cgcccgcccgcccgctcgctcgcc 54244
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>gb|AY217089.1| Mus musculus neuronal transcription factor BRN3a (Pou4f1) gene,
            complete cds; alternatively spliced
          Length = 11036

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 120  cgcccgtccgcccgctcgctcgcc 143
            |||||| |||||||||||||||||
Sbjct: 6125 cgcccgcccgcccgctcgctcgcc 6148
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>gb|AC162920.2| Mus musculus BAC clone RP23-357C16 from chromosome 9, complete sequence
          Length = 203466

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   acacccgcacgcacgcacgc 122
             ||||||||||||||||||||
Sbjct: 53242 acacccgcacgcacgcacgc 53261
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>ref|XM_975897.1| PREDICTED: Mus musculus POU domain, class 4, transcription factor 1
           (Pou4f1), mRNA
          Length = 932

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 120 cgcccgtccgcccgctcgctcgcc 143
           |||||| |||||||||||||||||
Sbjct: 288 cgcccgcccgcccgctcgctcgcc 311
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>ref|XM_799917.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508953.28) partial mRNA
          Length = 1317

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 145 gattcccatcctccccacca 164
           ||||||||||||||||||||
Sbjct: 382 gattcccatcctccccacca 363
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>gb|AC121997.3| Mus musculus BAC clone RP24-312G4 from chromosome 14, complete sequence
          Length = 143266

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 120   cgcccgtccgcccgctcgctcgcc 143
             |||||| |||||||||||||||||
Sbjct: 74039 cgcccgcccgcccgctcgctcgcc 74016
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>gb|AC122525.4| Mus musculus BAC clone RP24-496O17 from chromosome 9, complete sequence
          Length = 196461

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 120   cgcccgtccgcccgctcgctcgcc 143
             |||||| |||||||||||||||||
Sbjct: 43819 cgcccgcccgcccgctcgctcgcc 43796
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>ref|XM_862186.1| PREDICTED: Canis familiaris similar to LIM domain only 4
           (predicted), transcript variant 2 (LOC479962), mRNA
          Length = 1946

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 120 cgcccgtccgcccgctcgctcgcc 143
           |||||| |||||||||||||||||
Sbjct: 104 cgcccgcccgcccgctcgctcgcc 81
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>ref|XM_537086.2| PREDICTED: Canis familiaris similar to LIM domain only 4
           (predicted), transcript variant 1 (LOC479962), mRNA
          Length = 2210

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 120 cgcccgtccgcccgctcgctcgcc 143
           |||||| |||||||||||||||||
Sbjct: 308 cgcccgcccgcccgctcgctcgcc 285
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>emb|AL357894.6| Human DNA sequence from clone RP11-576P23 on chromosome Xp11.21-11.23
             Contains a novel gene and a CpG island, complete sequence
          Length = 154847

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 45    gccgtcaccaccaccggctccgcc 68
             |||| |||||||||||||||||||
Sbjct: 82645 gccgccaccaccaccggctccgcc 82622
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>emb|AL035694.8|HS33L1 Human DNA sequence from clone RP1-33L1 on chromosome 6q14.1-15 Contains
             the TBX18 gene for T-box 18 and 2 CpG islands, complete
             sequence
          Length = 100209

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   cgcacgcacgcacgcccgtc 127
             ||||||||||||||||||||
Sbjct: 51611 cgcacgcacgcacgcccgtc 51592
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>emb|AL606634.2|OSJN00066 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072N21,
              complete sequence
          Length = 130433

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 45     gccgtcaccaccaccggctccgcc 68
              ||||||||||||||||||| ||||
Sbjct: 122143 gccgtcaccaccaccggcttcgcc 122166
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>dbj|AB243405.1| Streptomyces albulus chloramphenicol resistance protein, putative
            membrane protein, putative D-amino acid oxidase (dao),
            putative carboxypeptidase, putative X-Pro
            dipeptidyl-peptidase, epsilon-poly-L-lysine-degrading
            enzyme (pld), hypothetical protein, hypothetical protein,
            hypothetical protein genes, partial and complete cds
          Length = 11723

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 58   ccggctccgcccgcccgcgtcgct 81
            ||||||||||||| ||||||||||
Sbjct: 9081 ccggctccgcccgtccgcgtcgct 9104
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>dbj|AB183864.1| Homo sapiens DGKK mRNA for diacylglycerol kinase kappa, complete
           cds
          Length = 3918

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 45  gccgtcaccaccaccggctccgcc 68
           |||| |||||||||||||||||||
Sbjct: 156 gccgccaccaccaccggctccgcc 179
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>ref|NM_001013742.1| Homo sapiens diacylglycerol kinase, kappa (DGKK), mRNA
          Length = 3918

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 45  gccgtcaccaccaccggctccgcc 68
           |||| |||||||||||||||||||
Sbjct: 156 gccgccaccaccaccggctccgcc 179
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>gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0045C13, from Chromosome 10, complete sequence
          Length = 161250

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   cccgcacgcacgcacgcccg 125
             ||||||||||||||||||||
Sbjct: 21279 cccgcacgcacgcacgcccg 21260
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 47      cgtcaccaccaccggctccg 66
               ||||||||||||||||||||
Sbjct: 3444343 cgtcaccaccaccggctccg 3444362
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 45      gccgtcaccaccaccggctccgcc 68
               ||||||||||||||||||| ||||
Sbjct: 8311630 gccgtcaccaccaccggcttcgcc 8311653



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 45      gccgtcaccaccaccggctccgcc 68
               ||||||||||||||||||| ||||
Sbjct: 7609313 gccgtcaccaccaccggcttcgcc 7609336
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 45      gccgtcaccaccaccggctccgcc 68
               ||||||||||||||||||| ||||
Sbjct: 6498297 gccgtcaccaccaccggcttcgcc 6498320
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 106     cccgcacgcacgcacgcccg 125
               ||||||||||||||||||||
Sbjct: 9788800 cccgcacgcacgcacgcccg 9788781
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 104      cacccgcacgcacgcacgcc 123
                ||||||||||||||||||||
Sbjct: 11480187 cacccgcacgcacgcacgcc 11480168
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 39       gggtctgccgtcaccaccaccggc 62
                ||||| ||||||||||||||||||
Sbjct: 27529218 gggtccgccgtcaccaccaccggc 27529241



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 252      gccggccggccgccctccga 271
                ||||||||||||||||||||
Sbjct: 25637154 gccggccggccgccctccga 25637173
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>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold
          Length = 1825024

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 122    cccgtccgcccgctcgctcgccgg 145
              |||| |||||||||||||||||||
Sbjct: 492909 cccgcccgcccgctcgctcgccgg 492886
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>dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1034_C08
          Length = 154441

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   cacccgcacgcacgcacgcc 123
             ||||||||||||||||||||
Sbjct: 34321 cacccgcacgcacgcacgcc 34302
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>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0135D07
          Length = 170587

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 39   gggtctgccgtcaccaccaccggc 62
            ||||| ||||||||||||||||||
Sbjct: 8887 gggtccgccgtcaccaccaccggc 8910
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>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0657H12
          Length = 142688

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 39     gggtctgccgtcaccaccaccggc 62
              ||||| ||||||||||||||||||
Sbjct: 120940 gggtccgccgtcaccaccaccggc 120963
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>dbj|AP005513.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0014E22
          Length = 157627

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    gccggccggccgccctccga 271
              ||||||||||||||||||||
Sbjct: 107201 gccggccggccgccctccga 107220
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>dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0010C01
          Length = 186185

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 252   gccggccggccgccctccga 271
             ||||||||||||||||||||
Sbjct: 39830 gccggccggccgccctccga 39849
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>gb|AY596082.1| Aegla ringueleti voucher KACa0473 28S large subunit ribosomal RNA
            gene, partial sequence
          Length = 2814

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2107 cgcacgcacgcacgcccgtc 2088
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>gb|AY596081.1| Aegla ringueleti voucher KACa0469 28S large subunit ribosomal RNA
            gene, partial sequence
          Length = 2814

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2107 cgcacgcacgcacgcccgtc 2088
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>gb|AY596078.1| Aegla jujuyana voucher KACa0447 28S large subunit ribosomal RNA gene,
            partial sequence
          Length = 2890

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2106 cgcacgcacgcacgcccgtc 2087
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>gb|AY596077.1| Aegla jujuyana voucher KACa0434 28S large subunit ribosomal RNA gene,
            partial sequence
          Length = 2890

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2106 cgcacgcacgcacgcccgtc 2087
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>gb|AY596074.1| Aegla scamosa voucher KACa0416 28S large subunit ribosomal RNA gene,
            partial sequence
          Length = 2829

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2104 cgcacgcacgcacgcccgtc 2085
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>gb|AY596073.1| Aegla scamosa voucher KACaA404 28S large subunit ribosomal RNA gene,
            partial sequence
          Length = 2829

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2104 cgcacgcacgcacgcccgtc 2085
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>gb|AY596072.1| Aegla scamosa voucher KACaA395 28S large subunit ribosomal RNA gene,
            partial sequence
          Length = 2826

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2101 cgcacgcacgcacgcccgtc 2082
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>gb|AY596069.1| Aegla platensis voucher KACa0421 28S large subunit ribosomal RNA
            gene, partial sequence
          Length = 2760

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2121 cgcacgcacgcacgcccgtc 2102
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>gb|AY596068.1| Aegla platensis voucher KACa0420 28S large subunit ribosomal RNA
            gene, partial sequence
          Length = 2760

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2121 cgcacgcacgcacgcccgtc 2102
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>gb|AY596065.1| Aegla strinatii voucher KACa0405 28S large subunit ribosomal RNA
            gene, partial sequence
          Length = 2845

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2102 cgcacgcacgcacgcccgtc 2083
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>gb|AY596064.1| Aegla strinatii voucher KACaB404 28S large subunit ribosomal RNA
            gene, partial sequence
          Length = 2845

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2102 cgcacgcacgcacgcccgtc 2083
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>gb|AY596061.1| Aegla cavernicola voucher KACa0412 28S large subunit ribosomal RNA
            gene, partial sequence
          Length = 2840

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2102 cgcacgcacgcacgcccgtc 2083
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>gb|AY596060.1| Aegla cavernicola voucher KACa0400 28S large subunit ribosomal RNA
            gene, partial sequence
          Length = 2840

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2102 cgcacgcacgcacgcccgtc 2083
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>gb|AY596053.1| Aegla platensis voucher KACa0384 28S large subunit ribosomal RNA
            gene, partial sequence
          Length = 2760

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2121 cgcacgcacgcacgcccgtc 2102
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>gb|AY596052.1| Aegla platensis voucher KACa0383 28S large subunit ribosomal RNA
            gene, partial sequence
          Length = 2760

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2121 cgcacgcacgcacgcccgtc 2102
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>gb|AY596017.1| Aegla parva voucher KACa0262 28S large subunit ribosomal RNA gene,
            partial sequence
          Length = 2840

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2102 cgcacgcacgcacgcccgtc 2083
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>gb|AY596016.1| Aegla parva voucher KACa0260 28S large subunit ribosomal RNA gene,
            partial sequence
          Length = 2840

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2102 cgcacgcacgcacgcccgtc 2083
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>gb|AY595985.1| Aegla strinatii voucher KACa0117 28S large subunit ribosomal RNA
            gene, partial sequence
          Length = 2840

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2102 cgcacgcacgcacgcccgtc 2083
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>gb|AY595976.1| Aegla platensis voucher KACapl03 28S large subunit ribosomal RNA
            gene, partial sequence
          Length = 2760

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2121 cgcacgcacgcacgcccgtc 2102
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>gb|AY595975.1| Aegla platensis voucher KACapl02 28S large subunit ribosomal RNA
            gene, partial sequence
          Length = 2760

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2121 cgcacgcacgcacgcccgtc 2102
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>gb|AY595974.1| Aegla platensis voucher KACapl01 28S large subunit ribosomal RNA
            gene, partial sequence
          Length = 2760

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cgcacgcacgcacgcccgtc 127
            ||||||||||||||||||||
Sbjct: 2121 cgcacgcacgcacgcccgtc 2102
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>dbj|AP005097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1114E07
          Length = 135511

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   cacccgcacgcacgcacgcc 123
             ||||||||||||||||||||
Sbjct: 94176 cacccgcacgcacgcacgcc 94157
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>dbj|AK106281.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-A03, full
           insert sequence
          Length = 1510

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 cacccgcacgcacgcacgcc 123
           ||||||||||||||||||||
Sbjct: 113 cacccgcacgcacgcacgcc 94
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>dbj|AK106365.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-B06, full
           insert sequence
          Length = 1457

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 cacccgcacgcacgcacgcc 123
           ||||||||||||||||||||
Sbjct: 113 cacccgcacgcacgcacgcc 94
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>dbj|AK072238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001M13, full
           insert sequence
          Length = 1468

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 cacccgcacgcacgcacgcc 123
           ||||||||||||||||||||
Sbjct: 144 cacccgcacgcacgcacgcc 125
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>gb|AC142557.3| Cercopithecus aethiops clone CH252-402M4, complete sequence
          Length = 150854

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 122    cccgtccgcccgctcgctcgccgg 145
              |||| |||||||||||||||||||
Sbjct: 107602 cccgcccgcccgctcgctcgccgg 107579
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 106     cccgcacgcacgcacgcccg 125
               ||||||||||||||||||||
Sbjct: 9794839 cccgcacgcacgcacgcccg 9794820
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 45      gccgtcaccaccaccggctccgcc 68
               ||||||||||||||||||| ||||
Sbjct: 6498172 gccgtcaccaccaccggcttcgcc 6498195
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>emb|AL954156.3|CNS08CCU Oryza sativa chromosome 12, . BAC OSJNBa0096K13 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 138508

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    gccgtcaccaccaccggctccgcc 68
             ||||||||||||||||||| ||||
Sbjct: 51437 gccgtcaccaccaccggcttcgcc 51460
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>emb|AL662960.3|OSJN00162 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0021F22,
              complete sequence
          Length = 181498

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 45     gccgtcaccaccaccggctccgcc 68
              ||||||||||||||||||| ||||
Sbjct: 131786 gccgtcaccaccaccggcttcgcc 131809
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>emb|AL731592.2|OSJN00242 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B17,
             complete sequence
          Length = 99093

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    gccgtcaccaccaccggctccgcc 68
             ||||||||||||||||||| ||||
Sbjct: 24198 gccgtcaccaccaccggcttcgcc 24221
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>emb|AL669851.8| Mouse DNA sequence from clone RP23-18K13 on chromosome X, complete
             sequence
          Length = 204557

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   acacccgcacgcacgcacgc 122
             ||||||||||||||||||||
Sbjct: 69369 acacccgcacgcacgcacgc 69350


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,600,665
Number of Sequences: 3902068
Number of extensions: 1600665
Number of successful extensions: 55878
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55393
Number of HSP's gapped (non-prelim): 483
length of query: 385
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 363
effective length of database: 17,147,199,772
effective search space: 6224433517236
effective search space used: 6224433517236
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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