>NDK3_ARATH (O49203) Nucleoside diphosphate kinase III,|
           chloroplast/mitochondrial precursor (EC 2.7.4.6) (NDK
           III) (NDP kinase III) (NDPK III)
          Length = 238

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 23/35 (65%), Positives = 27/35 (77%), Gaps = 3/35 (8%)
 Frame = +1

Query: 271 AWIA---AIPTAAYMLQGQDVHADEMERTFIAIKP 366
           +WI    A+P AAYM+Q Q+V A EMERTFIAIKP
Sbjct: 63  SWITGLLALPAAAYMIQDQEVLAAEMERTFIAIKP 97

>NDK4_ARATH (Q8LAH8) Nucleoside diphosphate kinase IV,|
           chloroplast/mitochondrial precursor (EC 2.7.4.6) (NDK
           IV) (NDP kinase IV) (NDPK IV) (Nucleoside diphosphate
           kinase 4)
          Length = 237

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 22/35 (62%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
 Frame = +1

Query: 271 AWIA---AIPTAAYMLQGQDVHADEMERTFIAIKP 366
           +WI    A+P AA+MLQ Q+  A EMERTFIAIKP
Sbjct: 62  SWITGLLALPAAAFMLQDQEALAAEMERTFIAIKP 96

>NDK4_SPIOL (Q8RXA8) Nucleoside diphosphate kinase 4, chloroplast precursor (EC|
           2.7.4.6) (Nucleoside diphosphate kinase IV) (NDK IV)
           (NDP kinase IV) (NDPK IV) (Nucleoside diphosphate kinase
           III)
          Length = 235

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 20/28 (71%), Positives = 22/28 (78%)
 Frame = +1

Query: 283 AIPTAAYMLQGQDVHADEMERTFIAIKP 366
           AIP AAY+LQ Q+  A E ERTFIAIKP
Sbjct: 67  AIPAAAYLLQDQEACAAEFERTFIAIKP 94

>YGFM_ECOLI (P64557) Hypothetical protein ygfM|
          Length = 259

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 260 EDASLAWWEWEYPAGRVEVLARLPRVASAAFLPS 159
           +D  L W +W+  A R+  ++RL  +  A F+P+
Sbjct: 50  QDLELDWVDWDNGALRIGAMSRLQPLRDARFIPA 83

>YGFM_ECO57 (P64558) Hypothetical protein ygfM|
          Length = 259

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 260 EDASLAWWEWEYPAGRVEVLARLPRVASAAFLPS 159
           +D  L W +W+  A R+  ++RL  +  A F+P+
Sbjct: 50  QDLELDWVDWDNGALRIGAMSRLQPLRDARFIPA 83


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,819,290
Number of Sequences: 219361
Number of extensions: 325671
Number of successful extensions: 1209
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)