ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart60e10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB088409.1| Triticum aestivum 1-FFT-A mRNA for fructan:fructan 1-fructosyltransferase, complete cds Length = 2304 Score = 611 bits (308), Expect = e-172 Identities = 388/415 (93%) Strand = Plus / Plus Query: 1 cgagatgataccggggtacctgtaccgcggcctcgccggcaccggcatgtacgagtgcat 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 945 cgagatgataccggggtacctgtaccgcggccccgccggcaccggcatgtacgagtgcat 1004 Query: 61 cgacatgtacgccgtgggcggcggccgcaaggccagcgacatgtacaactcgacggcgga 120 |||| |||||||||| ||||| |||||||||||||||||||||||||||||||| || | Sbjct: 1005 cgacctgtacgccgttggcggtggccgcaaggccagcgacatgtacaactcgaccgccaa 1064 Query: 121 gggcgtgctgtacgtactgaaagagagcagcgacgacgaccggcgcgactattacgcgct 180 || ||| ||||||| || || |||||||||||||| ||||||||||||||||||||||| Sbjct: 1065 ggatgtgttgtacgtgctcaaggagagcagcgacgatgaccggcgcgactattacgcgct 1124 Query: 181 cgggaggttcgacgcggcggccaacacatggacgccgatcgacgccgggctggagctcgg 240 ||||||||||||||| ||||||||||||||||||||||||||| ||| || ||| ||||| Sbjct: 1125 cgggaggttcgacgcagcggccaacacatggacgccgatcgacaccgagcaggaactcgg 1184 Query: 241 tgtcgcgctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgt 300 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1185 cgtcgcgctgcggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgt 1244 Query: 301 gaagcagcggcggatcgtgtgggggtacgtcgtcgagaccgactcctggaccgccgacgc 360 |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| Sbjct: 1245 gaagcagcggcggatcgtctgggggtacgttgtcgagaccgactcctggagcgccgacgc 1304 Query: 361 cgccnagggctgggccaacctccagtcgattccgaggacggtggagcttgacgag 415 |||| |||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1305 cgccaaggggtgggccaacctccagtcgattccgagaacggtggagcttgacgag 1359
>dbj|AB088410.1| Triticum aestivum 1-FFT-B mRNA for fructan:fructan 1-fructosyltransferase, complete cds Length = 2251 Score = 587 bits (296), Expect = e-164 Identities = 385/415 (92%) Strand = Plus / Plus Query: 1 cgagatgataccggggtacctgtaccgcggcctcgccggcaccggcatgtacgagtgcat 60 |||| |||||||||||||| |||||||||| | ||||||||||||||||||||||||||| Sbjct: 906 cgagttgataccggggtacttgtaccgcgggcccgccggcaccggcatgtacgagtgcat 965 Query: 61 cgacatgtacgccgtgggcggcggccgcaaggccagcgacatgtacaactcgacggcgga 120 |||||||| |||||| ||||| |||||||||||||||||||||||||| |||||||| | Sbjct: 966 cgacatgttcgccgtcggcggtggccgcaaggccagcgacatgtacaattcgacggccaa 1025 Query: 121 gggcgtgctgtacgtactgaaagagagcagcgacgacgaccggcgcgactattacgcgct 180 || |||||||||||| || || |||||||||||||||||||||||||||||||||||||| Sbjct: 1026 ggacgtgctgtacgtgctcaaggagagcagcgacgacgaccggcgcgactattacgcgct 1085 Query: 181 cgggaggttcgacgcggcggccaacacatggacgccgatcgacgccgggctggagctcgg 240 ||||||||||||||||||||||||||||||||||||||||||| ||| || ||| ||||| Sbjct: 1086 cgggaggttcgacgcggcggccaacacatggacgccgatcgacaccgagcgggaactcgg 1145 Query: 241 tgtcgcgctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgt 300 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1146 cgtcgcgctgcggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgt 1205 Query: 301 gaagcagcggcggatcgtgtgggggtacgtcgtcgagaccgactcctggaccgccgacgc 360 |||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||| || Sbjct: 1206 gaaggagcggcggatcgtctgggggtacgtcgtcgagaccgactcctggagtgccgatgc 1265 Query: 361 cgccnagggctgggccaacctccagtcgattccgaggacggtggagcttgacgag 415 ||| |||| ||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 1266 ggccaaggggtgggccaaccttcagtcgattccgagaacggtggagcttgacgag 1320
>dbj|AB029888.1| Triticum aestivum 1-SST mRNA for sucrose:sucrose 1-fructosytransferase, complete cds Length = 2330 Score = 389 bits (196), Expect = e-105 Identities = 360/415 (86%) Strand = Plus / Plus Query: 1 cgagatgataccggggtacctgtaccgcggcctcgccggcaccggcatgtacgagtgcat 60 |||| |||| ||||||||| |||||||||||| | ||||||||| |||||||||||| Sbjct: 958 cgagctgatgccggggtacatgtaccgcggccccaagggcaccggcgagtacgagtgcat 1017 Query: 61 cgacatgtacgccgtgggcggcggccgcaaggccagcgacatgtacaactcgacggcgga 120 |||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 1018 cgacctctacgccgtcggcgggggccgcaaggccagcgacatgtacaactcgacggccga 1077 Query: 121 gggcgtgctgtacgtactgaaagagagcagcgacgacgaccggcgcgactattacgcgct 180 || |||||||||||| || || |||||||||||||||||||||| ||||| ||| |||| Sbjct: 1078 ggacgtgctgtacgtgctcaaggagagcagcgacgacgaccggcacgactggtactcgct 1137 Query: 181 cgggaggttcgacgcggcggccaacacatggacgccgatcgacgccgggctggagctcgg 240 || |||||||||| || ||||||| |||||||||||||||| | |||||||||||| Sbjct: 1138 gggccggttcgacgccgccgccaacaagtggacgccgatcgacgaggagctggagctcgg 1197 Query: 241 tgtcgcgctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgt 300 |||| ||| |||||||||| |||| |||| |||||||||||||||||||||||||||| Sbjct: 1198 cgtcgggctgcggtacgactggggcaagtactacgcgtccaagtccttctacgaccccgt 1257 Query: 301 gaagcagcggcggatcgtgtgggggtacgtcgtcgagaccgactcctggaccgccgacgc 360 |||| ||||||| ||||||||| |||||||| |||||||||||| | ||||||| Sbjct: 1258 gaagaagcggcgcgtcgtgtgggcgtacgtcggcgagaccgactcggagcgcgccgacat 1317 Query: 361 cgccnagggctgggccaacctccagtcgattccgaggacggtggagcttgacgag 415 | || |||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1318 caccaaggggtgggccaacctccagtcgattccgaggacagtggagcttgacgag 1372
>emb|AJ567377.2|HVU567377 Hordeum vulgare partial mRNA for sucrose-sucrose-1-fructosyltransferase (1-sst gene) Length = 2157 Score = 365 bits (184), Expect = 8e-98 Identities = 357/415 (86%) Strand = Plus / Plus Query: 1 cgagatgataccggggtacctgtaccgcggcctcgccggcaccggcatgtacgagtgcat 60 |||| |||| ||||||||| |||||||||| | | ||||||||| |||||||||||| Sbjct: 831 cgagctgatgccggggtacatgtaccgcgggcccaagggcaccggcgagtacgagtgcat 890 Query: 61 cgacatgtacgccgtgggcggcggccgcaaggccagcgacatgtacaactcgacggcgga 120 |||| | |||||||| || |||||| ||| |||||||||||||||||||||||||||||| Sbjct: 891 cgacctctacgccgtcgggggcggcagcagggccagcgacatgtacaactcgacggcgga 950 Query: 121 gggcgtgctgtacgtactgaaagagagcagcgacgacgaccggcgcgactattacgcgct 180 || |||||||||||| || || |||||||||||||||||||||| ||||| ||| |||| Sbjct: 951 ggacgtgctgtacgtgctcaaggagagcagcgacgacgaccggcacgactggtactcgct 1010 Query: 181 cgggaggttcgacgcggcggccaacacatggacgccgatcgacgccgggctggagctcgg 240 ||| |||||||||| || ||||||| |||||||||||||||| || ||| |||||||| Sbjct: 1011 cggccggttcgacgccgccgccaacaagtggacgccgatcgacgacgagctcgagctcgg 1070 Query: 241 tgtcgcgctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgt 300 |||| ||| ||||||||| || | |||| ||||||||||||| |||||||||||||| Sbjct: 1071 cgtcgggctacggtacgaccggggaaagtactacgcgtccaagtcattctacgaccccgt 1130 Query: 301 gaagcagcggcggatcgtgtgggggtacgtcgtcgagaccgactcctggaccgccgacgc 360 |||| ||||||| ||||||||| || ||||| |||||||||||| | ||||||| Sbjct: 1131 gaagaagcggcgcgtcgtgtgggcgtgcgtcggcgagaccgactcggagcgcgccgacat 1190 Query: 361 cgccnagggctgggccaacctccagtcgattccgaggacggtggagcttgacgag 415 | || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1191 caccaagggctgggccaacctccagtcgattccgaggacggtggagcttgacgag 1245
>dbj|AB159786.1| Triticum aestivum 1-SST gene for sucrose:sucrose 1-fructosyltransferase, complete cds Length = 3326 Score = 337 bits (170), Expect = 2e-89 Identities = 331/385 (85%) Strand = Plus / Plus Query: 1 cgagatgataccggggtacctgtaccgcggcctcgccggcaccggcatgtacgagtgcat 60 |||| |||| ||||||||| |||||||||||| | ||||||||| |||||||||||| Sbjct: 1210 cgagctgatgccggggtacatgtaccgcggccccaagggcaccggcgagtacgagtgcat 1269 Query: 61 cgacatgtacgccgtgggcggcggccgcaaggccagcgacatgtacaactcgacggcgga 120 |||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 1270 cgacctctacgccgtcggcgggggccgcaaggccagcgacatgtacaactcgacggccga 1329 Query: 121 gggcgtgctgtacgtactgaaagagagcagcgacgacgaccggcgcgactattacgcgct 180 || |||||||||||| || || |||||||||||||||||||||| ||||| ||| |||| Sbjct: 1330 ggacgtgctgtacgtgctcaaggagagcagcgacgacgaccggcacgactggtactcgct 1389 Query: 181 cgggaggttcgacgcggcggccaacacatggacgccgatcgacgccgggctggagctcgg 240 || |||||||||| || ||||||| |||||||||||||||| | |||||||||||| Sbjct: 1390 gggccggttcgacgccgccgccaacaagtggacgccgatcgacgaggagctggagctcgg 1449 Query: 241 tgtcgcgctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgt 300 |||| ||| |||||||||| |||| |||| |||||||||||||||||||||||||||| Sbjct: 1450 cgtcgggctgcggtacgactggggcaagtactacgcgtccaagtccttctacgaccccgt 1509 Query: 301 gaagcagcggcggatcgtgtgggggtacgtcgtcgagaccgactcctggaccgccgacgc 360 |||| ||||||| ||||||||| |||||||| |||||||||||| | ||||||| Sbjct: 1510 gaagaagcggcgcgtcgtgtgggcgtacgtcggcgagaccgactcggagcgcgccgacat 1569 Query: 361 cgccnagggctgggccaacctccag 385 | || |||| ||||||||||||||| Sbjct: 1570 caccaaggggtgggccaacctccag 1594 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 383 cagtcgattccgaggacggtggagcttgacgag 415 ||||||||||||||||| ||||||||||||||| Sbjct: 2622 cagtcgattccgaggacagtggagcttgacgag 2654
>gb|AY575717.1| Triticum monococcum vacuolar invertase1 (vin1) mRNA, complete cds Length = 2414 Score = 125 bits (63), Expect = 1e-25 Identities = 224/278 (80%) Strand = Plus / Plus Query: 138 tgaaagagagcagcgacgacgaccggcgcgactattacgcgctcgggaggttcgacgcgg 197 |||| |||||||||||||||||||| | ||||| |||||||||||||||| |||||| | Sbjct: 1071 tgaaggagagcagcgacgacgaccgccacgactggtacgcgctcgggaggtacgacgccg 1130 Query: 198 cggccaacacatggacgccgatcgacgccgggctggagctcggtgtcgcgctccggtacg 257 ||||||||| | |||||||||||||| | | |||| | || ||| ||| |||||| Sbjct: 1131 cggccaacaagtacacgccgatcgacgcggagatggacgtgggcatcgggctgaggtacg 1190 Query: 258 actatggcaggtacgacgcgtccaagtccttctacgaccccgtgaagcagcggcggatcg 317 ||| |||| || | ||||||||||| |||||||||||||| ||| | || || | Sbjct: 1191 actggggcaagttctacgcgtccaagaccttctacgacccctccaagaaccgccgcgtgc 1250 Query: 318 tgtgggggtacgtcgtcgagaccgactcctggaccgccgacgccgccnagggctgggcca 377 | ||||||| ||| ||||||||||||| | |||||||| |||| |||| ||||| Sbjct: 1251 tctgggggtggatcggcgagaccgactccgagcgcgccgacgtcgccaagggatgggcgt 1310 Query: 378 acctccagtcgattccgaggacggtggagcttgacgag 415 |||||||||||| |||||||||||||||||||||||| Sbjct: 1311 ccctccagtcgatcccgaggacggtggagcttgacgag 1348 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 36 ccggcaccggcatgtacgagtgcatcgac 64 ||||||||||||||| |||||||||||| Sbjct: 996 ccggcaccggcatgtgggagtgcatcgac 1024
>emb|AJ297369.1|FAR297369 Festuca arundinacea mRNA for sucrose:sucrose 1-fructosyltransferase (1-SST gene) Length = 2045 Score = 115 bits (58), Expect = 1e-22 Identities = 130/154 (84%) Strand = Plus / Plus Query: 143 gagagcagcgacgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggcc 202 ||||||||||||||||| || | |||||| ||||||||||||||||||||||| || ||| Sbjct: 1039 gagagcagcgacgacgagcgccacgactactacgcgctcgggaggttcgacgccgccgcc 1098 Query: 203 aacacatggacgccgatcgacgccgggctggagctcggtgtcgcgctccggtacgactat 262 |||| ||||| || |||||| | |||||| ||||| ||| |||| ||||||||| Sbjct: 1099 aacatctggacacccatcgaccaggagctggacctcgggatcgggctcaggtacgactgg 1158 Query: 263 ggcaggtacgacgcgtccaagtccttctacgacc 296 |||| |||| |||| ||||||||||||||||||| Sbjct: 1159 ggcaagtactacgcctccaagtccttctacgacc 1192 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 11 ccggggtacctgtaccgcggcctcgccggcaccggcatgtacgagtgcatcgac 64 |||||| || || ||||||| | || |||||||||||||||||||||||||||| Sbjct: 910 ccggggaacatgcaccgcgggcccgacggcaccggcatgtacgagtgcatcgac 963
>gb|AF069309.1| Triticum aestivum vacuolar invertase (WIVRV) mRNA, partial cds Length = 1840 Score = 99.6 bits (50), Expect = 7e-18 Identities = 229/289 (79%) Strand = Plus / Plus Query: 127 gctgtacgtactgaaagagagcagcgacgacgaccggcgcgactattacgcgctcgggag 186 ||||||||| |||| ||||| |||||||||||||| | ||||| |||||||||||||| Sbjct: 510 gctgtacgtgatgaaggagagtagcgacgacgaccgccacgactggtacgcgctcgggag 569 Query: 187 gttcgacgcggcggccaacacatggacgccgatcgacgccgggctggagctcggtgtcgc 246 || ||||| |||||||||| | |||||||||||||| | | |||| | || ||| Sbjct: 570 gtatgacgccgcggccaacaagtacacgccgatcgacgcggagatggacgtgggcatcgg 629 Query: 247 gctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgtgaagca 306 ||| ||||||||| |||| || | ||||||||||| ||||||| |||||| ||| | Sbjct: 630 gctgaggtacgactggggcaagttctacgcgtccaagaccttctatgacccctccaagaa 689 Query: 307 gcggcggatcgtgtgggggtacgtcgtcgagaccgactcctggaccgccgacgccgccna 366 || || | | ||||||| ||| ||||||||||||| | |||||||| |||| | Sbjct: 690 ccgccgtgtgctctgggggtggatcggcgagaccgactccgagcgcgccgacgtcgccaa 749 Query: 367 gggctgggccaacctccagtcgattccgaggacggtggagcttgacgag 415 ||| ||||| |||||||||||| ||||||||||||||||| |||||| Sbjct: 750 gggatgggcgtccctccagtcgatcccgaggacggtggagctggacgag 798 Score = 48.1 bits (24), Expect = 0.023 Identities = 42/48 (87%) Strand = Plus / Plus Query: 36 ccggcaccggcatgtacgagtgcatcgacatgtacgccgtgggcggcg 83 ||||||||||||||| |||||||||||| | ||| |||| ||||||| Sbjct: 446 ccggcaccggcatgtgggagtgcatcgacttctaccccgtcggcggcg 493
>emb|AJ563384.1|ZMA563384 Zea mays partial ivr2 gene for vacuolar invertase, exons 1-2 Length = 1978 Score = 89.7 bits (45), Expect = 7e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 152 gacgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggccaacacatgg 211 ||||||||||| | |||||| |||||||| ||||||| ||||||||| |||||| | ||| Sbjct: 540 gacgacgaccgccacgactactacgcgctggggaggtacgacgcggccgccaacgcctgg 599 Query: 212 acgccgatcgacgccgg 228 ||||||||||||||||| Sbjct: 600 acgccgatcgacgccgg 616 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 37 cggcaccggcatgtacgagtgcatcgac 64 |||||||||||||| |||||||||||| Sbjct: 395 cggcaccggcatgtgggagtgcatcgac 422
>gb|AY107166.1| Zea mays PCO109921 mRNA sequence Length = 1901 Score = 89.7 bits (45), Expect = 7e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 152 gacgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggccaacacatgg 211 ||||||||||| | |||||| |||||||| ||||||| ||||||||| |||||| | ||| Sbjct: 609 gacgacgaccgccacgactactacgcgctggggaggtacgacgcggccgccaacgcctgg 668 Query: 212 acgccgatcgacgccgg 228 ||||||||||||||||| Sbjct: 669 acgccgatcgacgccgg 685 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 37 cggcaccggcatgtacgagtgcatcgac 64 |||||||||||||| |||||||||||| Sbjct: 464 cggcaccggcatgtgggagtgcatcgac 491
>gb|U31451.1|ZMU31451 Zea mays invertase mRNA, partial cds Length = 1530 Score = 89.7 bits (45), Expect = 7e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 152 gacgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggccaacacatgg 211 ||||||||||| | |||||| |||||||| ||||||| ||||||||| |||||| | ||| Sbjct: 595 gacgacgaccgccacgactactacgcgctggggaggtacgacgcggccgccaacgcctgg 654 Query: 212 acgccgatcgacgccgg 228 ||||||||||||||||| Sbjct: 655 acgccgatcgacgccgg 671 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 37 cggcaccggcatgtacgagtgcatcgac 64 |||||||||||||| |||||||||||| Sbjct: 450 cggcaccggcatgtgggagtgcatcgac 477
>gb|AY245431.1| Lolium perenne sucrose:sucrose 1-fructosyltransferase mRNA, complete cds Length = 1962 Score = 79.8 bits (40), Expect = 6e-12 Identities = 228/291 (78%) Strand = Plus / Plus Query: 122 ggcgtgctgtacgtactgaaagagagcagcgacgacgaccggcgcgactattacgcgctc 181 |||||||| | ||| || || ||||||||||||||||| || | |||||| ||||||||| Sbjct: 1015 ggcgtgctcttcgtgctcaaggagagcagcgacgacgagcgccacgactactacgcgctc 1074 Query: 182 gggaggttcgacgcggcggccaacacatggacgccgatcgacgccgggctggagctcggt 241 || ||||||||||| | |||||| |||||||| |||||| | |||||| || || Sbjct: 1075 ggaaggttcgacgccgtcgccaacgtttggacgcccatcgaccgggagctggaccttggg 1134 Query: 242 gtcgcgctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgtg 301 ||| |||| | ||||||| || | |||| |||| ||||||||||||||||||| | Sbjct: 1135 atcgggctcagatacgactggggaaagtactacgcctccaagtccttctacgaccagaag 1194 Query: 302 aagcagcggcggatcgtgtgggggtacgtcgtcgagaccgactcctggaccgccgacgcc 361 ||| | || || ||||| |||| ||| ||| ||||||||||||| | |||||| | Sbjct: 1195 aagaaccgccgcatcgtatgggcatacatcggcgagaccgactccgagcaggccgacatc 1254 Query: 362 gccnagggctgggccaacctccagtcgattccgaggacggtggagcttgac 412 || |||| |||||||| ||| | ||||||| || ||||||||||||||| Sbjct: 1255 accaagggatgggccaatctcatgacgattccaagaacggtggagcttgac 1305 Score = 56.0 bits (28), Expect = 9e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 11 ccggggtacctgtaccgcggcctcgccggcaccggcatgtacgagtgcatcgacatgtac 70 |||||| || || ||||||| | || ||||||||| |||||||||||||||||| | ||| Sbjct: 907 ccggggaacatgcaccgcgggcccgacggcaccggaatgtacgagtgcatcgacctctac 966 Query: 71 gccgtgggcggc 82 |||| |||||| Sbjct: 967 cccgtcggcggc 978
>gb|U16123.1|ZMU16123 Zea mays invertase (Ivr1) gene, complete cds Length = 4233 Score = 73.8 bits (37), Expect = 4e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 248 ctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgt 300 ||||||||||||||||||| |||| ||||||| ||| |||||||||||||||| Sbjct: 1569 ctccggtacgactatggcaagtactacgcgtcgaagaccttctacgaccccgt 1621
>gb|AF171874.1|AF171874 Zea mays soluble acid invertase IVR1 (Ivr1) mRNA, partial sequence Length = 1880 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 248 ctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgt 300 |||||||||||||| || | |||| ||||||||||| |||||||||||||||| Sbjct: 1049 ctccggtacgactacggaaagtactacgcgtccaagaccttctacgaccccgt 1101
>gb|DQ073969.1| Lolium perenne cell wall invertase mRNA, complete cds Length = 1752 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 248 ctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgtgaagcag 307 |||| ||||||||| |||| | | ||||||||||| |||||| |||||||||||||||| Sbjct: 934 ctccagtacgactacggcaacttctacgcgtccaagaccttcttcgaccccgtgaagcag 993 Query: 308 cggcggatc 316 || |||||| Sbjct: 994 cgccggatc 1002
>gb|DQ267825.1| Dendrocalamopsis oldhamii vacuolar invertase BObetaFRUCT3 mRNA, complete cds Length = 2155 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 152 gacgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggccaacacatgg 211 ||||||||||||| |||||| |||||||| || |||| ||||||||| |||||||| ||| Sbjct: 1063 gacgacgaccggcacgactactacgcgctgggcaggtacgacgcggctgccaacacgtgg 1122 Query: 212 acgcc 216 |||| Sbjct: 1123 gcgcc 1127
>gb|AF210723.1|AF210723 Hordeum vulgare variety Steptoe sucrose:fructan 6-fructosyltransferase (6-SFT) gene, partial cds Length = 527 Score = 63.9 bits (32), Expect = 4e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 152 gacgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggccaacacatgg 211 |||||||| |||| |||||| ||| |||| || | || |||| ||||||||||||| ||| Sbjct: 30 gacgacgaacggcacgactactactcgctgggcacgtacgactcggcggccaacacctgg 89 Query: 212 acgccgatcgac 223 |||||||||||| Sbjct: 90 acgccgatcgac 101
>gb|AF083856.1|AF083856 Saccharum hybrid cultivar H65-7052 soluble acid invertase (scinvh3'2) mRNA, partial cds Length = 1402 Score = 63.9 bits (32), Expect = 4e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 152 gacgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggccaacacatgg 211 ||||||||||| | ||||| |||||||||||||||| |||||||| |||||| | ||| Sbjct: 105 gacgacgaccgacatgactactacgcgctcgggaggtatgacgcggccgccaacgcgtgg 164 Query: 212 acgccgatcgacgccg 227 |||||| | ||||||| Sbjct: 165 acgccgctggacgccg 180
>gb|AF062735.1|AF062735 Saccharum officinarum soluble acid invertase mRNA, partial cds Length = 1808 Score = 63.9 bits (32), Expect = 4e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 152 gacgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggccaacacatgg 211 ||||||||||| | ||||| | |||||||||||||| |||||||| |||||| | ||| Sbjct: 778 gacgacgaccgacatgactactgcgcgctcgggaggtatgacgcggccgccaacgcgtgg 837 Query: 212 acgccgatcgacgccg 227 |||||| ||||||||| Sbjct: 838 acgccgctcgacgccg 853
>gb|AF062734.1|AF062734 Saccharum robustum soluble acid invertase mRNA, partial cds Length = 1808 Score = 63.9 bits (32), Expect = 4e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 152 gacgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggccaacacatgg 211 ||||||||||| | ||||| | |||||||||||||| |||||||| |||||| | ||| Sbjct: 778 gacgacgaccgacatgactactgcgcgctcgggaggtatgacgcggccgccaacgcgtgg 837 Query: 212 acgccgatcgacgccg 227 |||||| ||||||||| Sbjct: 838 acgccgctcgacgccg 853
>ref|XM_473317.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2001 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 247 gctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgt 300 ||||||||||||||| |||| || | ||||||||||| | |||||||||||||| Sbjct: 1125 gctccggtacgactacggcaagttctacgcgtccaagacgttctacgaccccgt 1178
>emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020O11, complete sequence Length = 113677 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 247 gctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgt 300 ||||||||||||||| |||| || | ||||||||||| | |||||||||||||| Sbjct: 42788 gctccggtacgactacggcaagttctacgcgtccaagacgttctacgaccccgt 42735
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 247 gctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgt 300 ||||||||||||||| |||| || | ||||||||||| | |||||||||||||| Sbjct: 26740407 gctccggtacgactacggcaagttctacgcgtccaagacgttctacgaccccgt 26740460
>gb|AF276703.1|AF276703 Oryza sativa vacuolar acid invertase (INV2) gene, complete cds Length = 7858 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 247 gctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgt 300 ||||||||||||||| |||| || | ||||||||||| | |||||||||||||| Sbjct: 2546 gctccggtacgactacggcaagttctacgcgtccaagacgttctacgaccccgt 2599
>dbj|AB125218.1| Lolium perenne mRNA for putative fructosyltransferase2, complete cds Length = 2462 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 37 cggcaccggcatgtacgagtgcatcgacatgtacgccgtgggcggc 82 |||||||||||||||||||||| ||||||| | | ||||||||||| Sbjct: 938 cggcaccggcatgtacgagtgcctcgacatcttccccgtgggcggc 983 Score = 58.0 bits (29), Expect = 2e-05 Identities = 112/140 (80%) Strand = Plus / Plus Query: 273 acgcgtccaagtccttctacgaccccgtgaagcagcggcggatcgtgtgggggtacgtcg 332 ||||||||||||||||||||||||| | ||| | ||||| |||| |||| | ||||| Sbjct: 1171 acgcgtccaagtccttctacgacccgatcaagaaccggcgtgtcgtttgggctttcgtcg 1230 Query: 333 tcgagaccgactcctggaccgccgacgccgccnagggctgggccaacctccagtcgattc 392 |||||||||||| | |||||| ||| |||| ||||| |||| |||||||| Sbjct: 1231 gcgagaccgactctgagcaggccgacaaagccaagggatgggcgtccctcatgtcgattc 1290 Query: 393 cgaggacggtggagcttgac 412 |||||||||||||||||||| Sbjct: 1291 cgaggacggtggagcttgac 1310
>dbj|AK099312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147H06, full insert sequence Length = 2243 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 247 gctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgt 300 ||||||||||||||| |||| || | ||||||||||| | |||||||||||||| Sbjct: 1272 gctccggtacgactacggcaagttctacgcgtccaagacgttctacgaccccgt 1325
>dbj|AK099126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042C22, full insert sequence Length = 1376 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 247 gctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgt 300 ||||||||||||||| |||| || | ||||||||||| | |||||||||||||| Sbjct: 1208 gctccggtacgactacggcaagttctacgcgtccaagacgttctacgaccccgt 1261
>dbj|AK065130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P13, full insert sequence Length = 2255 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 247 gctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgt 300 ||||||||||||||| |||| || | ||||||||||| | |||||||||||||| Sbjct: 1271 gctccggtacgactacggcaagttctacgcgtccaagacgttctacgaccccgt 1324
>gb|AY302083.1| Saccharum hybrid cultivar soluble acid invertase (ShinvA) mRNA, partial cds Length = 2274 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 167 gactattacgcgctcgggaggttcgacgcggcggccaacacatggacgccgatcgacgcc 226 ||||| |||||||||||||||| |||||||| |||||| | ||||||||| | |||||| Sbjct: 1012 gactactacgcgctcgggaggtatgacgcggccgccaacgcgtggacgccgctggacgcc 1071 Query: 227 g 227 | Sbjct: 1072 g 1072
>gb|AF492836.1| Lolium perenne putative sucrose:sucrose 1-fructosyltransferase mRNA, complete cds Length = 2508 Score = 58.0 bits (29), Expect = 2e-05 Identities = 202/260 (77%) Strand = Plus / Plus Query: 153 acgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggccaacacatgga 212 ||||||| ||| |||||| |||||||| ||| |||||||||| || |||||||| |||| Sbjct: 1066 acgacgagtggcacgactactacgcgcttgggtggttcgacgccgccgccaacacgtgga 1125 Query: 213 cgccgatcgacgccgggctggagctcggtgtcgcgctccggtacgactatggcaggtacg 272 |||| ||| ||| | ||| || || ||| ||| ||||||||| |||| |||| Sbjct: 1126 cgccacaggaccccgaggcggaccttgggatcggcctcaggtacgactggggcaagtact 1185 Query: 273 acgcgtccaagtccttctacgaccccgtgaagcagcggcggatcgtgtgggggtacgtcg 332 ||||||||||||||||||| ||||| | ||| | ||||| |||| |||| | ||||| Sbjct: 1186 acgcgtccaagtccttctatgacccgatcaagaaccggcgtgtcgtttgggctttcgtcg 1245 Query: 333 tcgagaccgactcctggaccgccgacgccgccnagggctgggccaacctccagtcgattc 392 |||||||||||| | |||||| ||| |||| ||||| |||| |||||||| Sbjct: 1246 gcgagaccgactctgagcaggccgacaaagccaagggatgggcgtccctcatgtcgattc 1305 Query: 393 cgaggacggtggagcttgac 412 | |||||||||||||||||| Sbjct: 1306 ccaggacggtggagcttgac 1325 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 37 cggcaccggcatgtacgagtgc 58 |||||||||||||||||||||| Sbjct: 953 cggcaccggcatgtacgagtgc 974
>dbj|AK072245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002K22, full insert sequence Length = 2443 Score = 58.0 bits (29), Expect = 2e-05 Identities = 67/80 (83%) Strand = Plus / Plus Query: 329 gtcgtcgagaccgactcctggaccgccgacgccgccnagggctgggccaacctccagtcg 388 |||| ||||||||||||| | |||||||| |||| |||| ||||| |||||||||| Sbjct: 1341 gtcggcgagaccgactccgagcgcgccgacgtcgccaagggttgggcttccctccagtcg 1400 Query: 389 attccgaggacggtggagct 408 ||||| ||||||||||||| Sbjct: 1401 attcctcggacggtggagct 1420
>gb|AF210722.1|AF210722 Hordeum vulgare variety Morex sucrose:fructan 6-fructosyltransferase (6-SFT) gene, partial cds Length = 547 Score = 56.0 bits (28), Expect = 9e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 152 gacgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggccaacacatgg 211 |||||||| |||| |||||| ||| |||| || | || |||| ||||||||||||| ||| Sbjct: 30 gacgacgaacggcacgactactactcgctgggcacgtacgactcggcggccaacacctgg 89 Query: 212 acgccgatcgac 223 ||||| |||||| Sbjct: 90 acgcccatcgac 101
>emb|X83233.1|HVSF6FT Hordeum vulgare mRNA for sucrose:fructan 6-fructosyltransferase Length = 2091 Score = 56.0 bits (28), Expect = 9e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 152 gacgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggccaacacatgg 211 |||||||| |||| |||||| ||| |||| || | || |||| ||||||||||||| ||| Sbjct: 967 gacgacgaacggcacgactactactcgctgggcacgtacgactcggcggccaacacgtgg 1026 Query: 212 acgccgatcgac 223 ||||| |||||| Sbjct: 1027 acgcccatcgac 1038
>emb|AJ563423.1|ZMA563423 Zea mays partial ivr2b pseudogene Length = 7411 Score = 54.0 bits (27), Expect = 4e-04 Identities = 58/67 (86%), Gaps = 1/67 (1%) Strand = Plus / Plus Query: 152 gacgacgaccggcgcgactattacgcgctcgggaggt-tcgacgcggcggccaacacatg 210 ||||||||||| | |||||| ||||||||||| |||| ||||||||| |||||| | || Sbjct: 5757 gacgacgaccgccacgactactacgcgctcggcaggtaacgacgcggccgccaacgcctg 5816 Query: 211 gacgccg 217 ||||||| Sbjct: 5817 gacgccg 5823 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 273 acgcgtccaagtccttctacgaccc 297 ||||||||||| ||||||||||||| Sbjct: 5869 acgcgtccaagaccttctacgaccc 5893
>gb|AF050129.1|AF050129 Zea mays cell wall invertase Incw1 gene, complete cds Length = 5364 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Plus Query: 248 ctccggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgtg 301 ||||| |||||||| |||| ||| ||||||||||| | ||||||||||||||| Sbjct: 2169 ctccgctacgactacggcaactactacgcgtccaagacgttctacgaccccgtg 2222
>emb|AJ532551.1|LTE532551 Lolium temulentum partial mRNA for putative soluble acid invertase (inv1:2 gene) Length = 1998 Score = 50.1 bits (25), Expect = 0.006 Identities = 129/164 (78%) Strand = Plus / Plus Query: 252 ggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgtgaagcagcggc 311 ||||||||| |||| || | ||||||||||| ||||||||||||| | |||||||||| Sbjct: 783 ggtacgactggggcaagttctacgcgtccaagaccttctacgacccggccaagcagcggc 842 Query: 312 ggatcgtgtgggggtacgtcgtcgagaccgactcctggaccgccgacgccgccnagggct 371 | | | ||||||| ||| ||||||||||||| | ||||| | |||| |||| | Sbjct: 843 gcgtgctctgggggtggatcggcgagaccgactccgagcgagccgatgtcgccaagggat 902 Query: 372 gggccaacctccagtcgattccgaggacggtggagcttgacgag 415 |||| ||| |||||| ||||||||||||||||| |||||| Sbjct: 903 gggcatccctaatgtcgatcccgaggacggtggagctcgacgag 946 Score = 42.1 bits (21), Expect = 1.4 Identities = 54/65 (83%) Strand = Plus / Plus Query: 143 gagagcagcgacgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggcc 202 |||||||||||||||||||| | |||| ||| |||| |||| | ||||||||| ||| Sbjct: 674 gagagcagcgacgacgaccgacatgactggtacacgctagggaaatacgacgcggcagcc 733 Query: 203 aacac 207 ||||| Sbjct: 734 aacac 738 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 37 cggcaccggcatgtacgagtgcatcgac 64 |||||||||||||| |||||||||||| Sbjct: 595 cggcaccggcatgtgggagtgcatcgac 622
>gb|AF252607.1| Psathyrostachys juncea sucrose:fructan 6-fructosyltransferase (6-SFT) mRNA, partial cds Length = 1315 Score = 48.1 bits (24), Expect = 0.023 Identities = 57/68 (83%) Strand = Plus / Plus Query: 152 gacgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggccaacacatgg 211 ||||| || |||| |||||| ||| |||| || |||| |||| ||||||| ||||| ||| Sbjct: 30 gacgatgaacggcacgactactactcgctaggcaggtacgactcggcggcaaacacgtgg 89 Query: 212 acgccgat 219 |||||||| Sbjct: 90 acgccgat 97
>gb|U17695.1|ZMU17695 Zea mays cell wall invertase mRNA, complete cds Length = 2149 Score = 48.1 bits (24), Expect = 0.023 Identities = 42/48 (87%) Strand = Plus / Plus Query: 254 tacgactatggcaggtacgacgcgtccaagtccttctacgaccccgtg 301 |||||||| |||| ||| ||||||||||| | ||||||||||||||| Sbjct: 979 tacgactacggcaactactacgcgtccaagacgttctacgaccccgtg 1026
>gb|AY110034.1| Zea mays CL1139_2 mRNA sequence Length = 2161 Score = 48.1 bits (24), Expect = 0.023 Identities = 42/48 (87%) Strand = Plus / Plus Query: 254 tacgactatggcaggtacgacgcgtccaagtccttctacgaccccgtg 301 |||||||| |||| ||| ||||||||||| | ||||||||||||||| Sbjct: 991 tacgactacggcaactactacgcgtccaagacgttctacgaccccgtg 1038
>gb|AF481763.1| Lolium perenne fructosyltransferase (FT1) mRNA, complete cds Length = 2386 Score = 46.1 bits (23), Expect = 0.090 Identities = 29/31 (93%) Strand = Plus / Plus Query: 385 gtcgattccgaggacggtggagcttgacgag 415 ||||||||||||||||||||| || |||||| Sbjct: 1304 gtcgattccgaggacggtggaactcgacgag 1334 Score = 42.1 bits (21), Expect = 1.4 Identities = 54/65 (83%) Strand = Plus / Plus Query: 143 gagagcagcgacgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggcc 202 |||||||||||||||||||| | |||| ||| |||| |||| | ||||||||| ||| Sbjct: 1062 gagagcagcgacgacgaccgacatgactggtacacgctagggaaatacgacgcggcagcc 1121 Query: 203 aacac 207 ||||| Sbjct: 1122 aacac 1126 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 37 cggcaccggcatgtacgagtgcatcgac 64 |||||||||||||| |||||||||||| Sbjct: 983 cggcaccggcatgtgggagtgcatcgac 1010
>emb|AJ635225.1| Triticum aestivum mRNA for acid beta-fructofuranosidase precursor (inv1 gene) Length = 2250 Score = 46.1 bits (23), Expect = 0.090 Identities = 44/51 (86%) Strand = Plus / Plus Query: 167 gactattacgcgctcgggaggttcgacgcggcggccaacacatggacgccg 217 ||||| |||||||| || |||| |||||||||| ||||||||||||||| Sbjct: 1146 gactactacgcgctgggaaggtacgacgcggcgaagaacacatggacgccg 1196
>emb|AJ532550.1|LTE532550 Lolium temulentum mRNA for putative fructan 6-fructosyltransferase (6ft gene) Length = 2331 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Plus Query: 182 gggaggttcgacgcggcggccaacacatggacgcc 216 ||||||| ||||||||| || |||||||||||||| Sbjct: 1059 gggaggtacgacgcggcagcgaacacatggacgcc 1093 Score = 40.1 bits (20), Expect = 5.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 273 acgcgtccaagtccttctacgaccccgtgaagcagcggcg 312 |||| |||| |||||||||||| || ||||||||||||| Sbjct: 1150 acgcttccacgtccttctacgatccgctgaagcagcggcg 1189
>gb|AF043346.1|AF043346 Zea mays cell wall invertase (incw3) gene, complete cds Length = 6997 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 273 acgcgtccaagtccttctacga 294 |||||||||||||||||||||| Sbjct: 3440 acgcgtccaagtccttctacga 3461
>gb|AY111968.1| Zea mays CL1139_-3 mRNA sequence Length = 2057 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 273 acgcgtccaagtccttctacga 294 |||||||||||||||||||||| Sbjct: 1075 acgcgtccaagtccttctacga 1096
>gb|DQ267823.1| Dendrocalamopsis oldhamii cell wall invertase BObetaFRUCT1 mRNA, complete cds Length = 1903 Score = 44.1 bits (22), Expect = 0.36 Identities = 61/74 (82%) Strand = Plus / Plus Query: 251 cggtacgactatggcaggtacgacgcgtccaagtccttctacgaccccgtgaagcagcgg 310 ||||||||||| |||| | | |||||||||| | ||||||||||| | ||||| ||| Sbjct: 937 cggtacgactacggcaacttctacgcgtccaaaacgttctacgacccggcgaagcggcgc 996 Query: 311 cggatcgtgtgggg 324 |||||| ||||||| Sbjct: 997 cggatcctgtgggg 1010
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 acgccgatcgacgccgggctg 232 ||||||||||||||||||||| Sbjct: 572937 acgccgatcgacgccgggctg 572917
>gb|AC137586.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0054A16, complete sequence Length = 164605 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 67221 gagcagcgacgacgaccggagcgac 67197
>gb|AC137588.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0060K21, complete sequence Length = 153973 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 49798 gagcagcgacgacgaccggagcgac 49774
>gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0048F12, complete sequence Length = 139627 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 74364 gagcagcgacgacgaccggagcgac 74388
>gb|AC144453.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0050A24, complete sequence Length = 142574 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 4378 gagcagcgacgacgaccggagcgac 4402
>gb|AC136523.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0018C06, complete sequence Length = 179695 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 133502 gagcagcgacgacgaccggagcgac 133526
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 20268765 gagcagcgacgacgaccggagcgac 20268741 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 19449421 gagcagcgacgacgaccggagcgac 19449445 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 cgcggcctcgccggcaccggcatg 49 ||||||||||||||||||| |||| Sbjct: 31649600 cgcggcctcgccggcaccgccatg 31649577
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 372 gggccaacctccagtcgattccgag 396 |||||||||||||||| |||||||| Sbjct: 837768 gggccaacctccagtccattccgag 837744
>gb|AC091233.8| Oryza sativa chromosome 3 BAC OSJNBa0053G10 genomic sequence, complete sequence Length = 145155 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 103616 gagcagcgacgacgaccggagcgac 103592
>gb|AY162186.1| Triticum monococcum extracellular invertase (exin1) mRNA, complete cds Length = 2279 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 273 acgcgtccaagtccttctacgaccc 297 |||||||||||||||||| |||||| Sbjct: 979 acgcgtccaagtccttcttcgaccc 1003
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 aaagagagcagcgacgacgac 160 ||||||||||||||||||||| Sbjct: 1623214 aaagagagcagcgacgacgac 1623234
>gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A15 genomic sequence, complete sequence Length = 156929 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 64072 gagcagcgacgacgaccggagcgac 64048
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 26777585 gagcagcgacgacgaccggagcgac 26777609 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 26768421 gagcagcgacgacgaccggagcgac 26768445 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 14471166 gagcagcgacgacgaccggagcgac 14471142 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 2265930 gagcagcgacgacgaccggagcgac 2265906
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 21167639 gagcagcgacgacgaccggagcgac 21167615 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 15453867 gagcagcgacgacgaccggagcgac 15453843 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 cggcctcgccggcaccggca 47 |||||||||||||||||||| Sbjct: 14396491 cggcctcgccggcaccggca 14396472
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 5254931 gagcagcgacgacgaccggagcgac 5254907 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 aactcgacggcggagggcgt 126 |||||||||||||||||||| Sbjct: 8380217 aactcgacggcggagggcgt 8380198
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 12050688 gagcagcgacgacgaccggagcgac 12050712 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 11629929 gagcagcgacgacgaccggagcgac 11629953
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 20261794 gagcagcgacgacgaccggagcgac 20261770 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 19442448 gagcagcgacgacgaccggagcgac 19442472 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 cgcggcctcgccggcaccggcatg 49 ||||||||||||||||||| |||| Sbjct: 31740116 cgcggcctcgccggcaccgccatg 31740093
>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1715_A07 Length = 130907 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 121645 gagcagcgacgacgaccggagcgac 121621
>dbj|AP004379.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0589E08 Length = 138416 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 53694 gagcagcgacgacgaccggagcgac 53670
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 21477880 gagcagcgacgacgaccggagcgac 21477856 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 15536358 gagcagcgacgacgaccggagcgac 15536334 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 cggcctcgccggcaccggca 47 |||||||||||||||||||| Sbjct: 14478492 cggcctcgccggcaccggca 14478473
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 26705755 gagcagcgacgacgaccggagcgac 26705779 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 26696591 gagcagcgacgacgaccggagcgac 26696615 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 14425450 gagcagcgacgacgaccggagcgac 14425426 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 2265874 gagcagcgacgacgaccggagcgac 2265850
>emb|AL731889.5|CNS08C8T Oryza sativa chromosome 12, . BAC OJ1122_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 83015 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 2705 gagcagcgacgacgaccggagcgac 2681
>emb|AL731753.2|CNS08C82 Oryza sativa chromosome 12, . BAC OJ1112_B07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 118101 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 46126 gagcagcgacgacgaccggagcgac 46150
>emb|BX000561.2|CNS08CE7 Oryza sativa chromosome 12, . BAC OJ1014_F06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104849 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 30557 gagcagcgacgacgaccggagcgac 30533 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 21393 gagcagcgacgacgaccggagcgac 21369
>emb|CR533581.1| Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0062G09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 28333 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 gagcagcgacgacgaccggcgcgac 169 ||||||||||||||||||| ||||| Sbjct: 10882 gagcagcgacgacgaccggagcgac 10906
>ref|NM_188421.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 570 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 cggcctcgccggcaccggca 47 |||||||||||||||||||| Sbjct: 525 cggcctcgccggcaccggca 506
>ref|NM_186853.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1716 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 aactcgacggcggagggcgt 126 |||||||||||||||||||| Sbjct: 1375 aactcgacggcggagggcgt 1394
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 accgcggcctcgccggcaccggca 47 ||||||||||||| |||||||||| Sbjct: 4333731 accgcggcctcgctggcaccggca 4333754
>gb|AC147925.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032N11 map near 50283S, complete sequence Length = 139217 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 cggcctcgccggcaccggca 47 |||||||||||||||||||| Sbjct: 11325 cggcctcgccggcaccggca 11306
>gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0039A07 map near 50283S, complete sequence Length = 158158 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 cggcctcgccggcaccggca 47 |||||||||||||||||||| Sbjct: 142103 cggcctcgccggcaccggca 142084
>gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete sequence Length = 150743 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 cgcggcctcgccggcaccggcatg 49 ||||||||||||||||||| |||| Sbjct: 31067 cgcggcctcgccggcaccgccatg 31090
>ref|XM_580746.2| PREDICTED: Bos taurus similar to matrilin 4 isoform 2 precursor (LOC504598), mRNA Length = 1890 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 gcatcgacatgtacgccgtgggcg 80 |||||| ||||||||||||||||| Sbjct: 1568 gcatcgtcatgtacgccgtgggcg 1591
>gb|AY225499.1| Conotelus mexicanus large subunit ribosomal RNA gene, partial sequence Length = 750 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 cgacgcgtccaagtccttct 290 |||||||||||||||||||| Sbjct: 50 cgacgcgtccaagtccttct 69
>gb|AY225498.1| Conotelus sp. MAL-2003b large subunit ribosomal RNA gene, partial sequence Length = 749 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 cgacgcgtccaagtccttct 290 |||||||||||||||||||| Sbjct: 50 cgacgcgtccaagtccttct 69
>gb|AY225497.1| Conotelus sp. MAL-2003a large subunit ribosomal RNA gene, partial sequence Length = 705 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 cgacgcgtccaagtccttct 290 |||||||||||||||||||| Sbjct: 50 cgacgcgtccaagtccttct 69
>gb|AE017286.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough plasmid pDV, complete sequence Length = 202301 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 gcagcgacgacgaccggcgc 166 |||||||||||||||||||| Sbjct: 127274 gcagcgacgacgaccggcgc 127255
>gb|AY310713.1| Nitidulinae sp. JAR-2003 28S ribosomal RNA gene, partial sequence Length = 2185 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 cgacgcgtccaagtccttct 290 |||||||||||||||||||| Sbjct: 145 cgacgcgtccaagtccttct 164
>ref|XM_543015.2| PREDICTED: Canis familiaris similar to Matrilin-4 precursor (LOC485891), mRNA Length = 1875 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 gcatcgacatgtacgccgtgggcg 80 |||||| ||||||||||||||||| Sbjct: 1556 gcatcgtcatgtacgccgtgggcg 1579
>ref|XM_743772.1| Aspergillus fumigatus Af293 hypothetical protein (Afu7g06450) partial mRNA Length = 723 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tggcaggtacgacgcgtcca 281 |||||||||||||||||||| Sbjct: 412 tggcaggtacgacgcgtcca 431
>gb|DP000044.2| Callithrix jacchus target 106 genomic scaffold Length = 574594 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 gcatcgacatgtacgccgtgggcg 80 |||||| ||||||||||||||||| Sbjct: 439694 gcatcgtcatgtacgccgtgggcg 439671
>emb|AJ007581.1|HSA7581 Homo sapiens mRNA for matrilin-4, partial Length = 2003 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 gcatcgacatgtacgccgtgggcg 80 |||||| ||||||||||||||||| Sbjct: 1436 gcatcgtcatgtacgccgtgggcg 1459
>emb|AL021578.4|HS453C12 Human DNA sequence from clone RP3-453C12 on chromosome 20q12-13.12 Contains the MATN4 gene for matrilin 4, the RBPSUHL gene for recombining binding protein suppressor of hairless (Drosophila)-like, the SDC4 (syndecan 4 (amphiglycan, ryudocan)) gene, the C20orf169 gene for a novel protein similar to Drosophila CG11753, the C20orf10 gene for p53 response element (clg01), the C20orf35 gene for uncharacterized hypothalamus protein, the C20orf10 gene, the PIGT gene for phosphatidyl inositol glycan class T, an NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4 (NDUFB4) pseudogene and CpG islands, complete sequence Length = 147620 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 gcatcgacatgtacgccgtgggcg 80 |||||| ||||||||||||||||| Sbjct: 9340 gcatcgtcatgtacgccgtgggcg 9317
>gb|BT009003.1| Triticum aestivum clone wdk2c.pk017.f14:fis, full insert mRNA sequence Length = 1612 Score = 40.1 bits (20), Expect = 5.6 Identities = 59/72 (81%) Strand = Plus / Plus Query: 152 gacgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggccaacacatgg 211 |||||||| |||| |||||| ||| |||| || | || |||| |||| || ||| | ||| Sbjct: 481 gacgacgaacggcacgactactactcgctaggcacgtacgactcggcagcaaacgcgtgg 540 Query: 212 acgccgatcgac 223 |||||||||||| Sbjct: 541 acgccgatcgac 552
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gcgacgacgaccggcgcgac 169 |||||||||||||||||||| Sbjct: 194018 gcgacgacgaccggcgcgac 193999
>gb|AF252608.1| Pascopyrum smithii sucrose:fructan 6-fructosyltransferase (6-SFT) mRNA, partial cds Length = 1294 Score = 40.1 bits (20), Expect = 5.6 Identities = 56/68 (82%) Strand = Plus / Plus Query: 152 gacgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggccaacacatgg 211 |||||||| || | |||||| ||| |||| || | || |||| ||||||| ||||| ||| Sbjct: 30 gacgacgaacgacacgactactactcgctaggcacgtacgactcggcggcaaacacgtgg 89 Query: 212 acgccgat 219 |||||||| Sbjct: 90 acgccgat 97
>gb|AF211253.1| Agropyron cristatum sucrose:fructan 6-fructosyltransferase (6-SFT) mRNA, complete cds Length = 2174 Score = 40.1 bits (20), Expect = 5.6 Identities = 56/68 (82%) Strand = Plus / Plus Query: 152 gacgacgaccggcgcgactattacgcgctcgggaggttcgacgcggcggccaacacatgg 211 |||||||| || | |||||| ||| |||| || | || |||| ||||||| |||| |||| Sbjct: 1001 gacgacgagcgacacgactactactcgctaggcacgtacgactcggcggcaaacatatgg 1060 Query: 212 acgccgat 219 |||||||| Sbjct: 1061 acgccgat 1068
>gb|AF067203.1| Branchiostoma floridae transcription factor BF-1 mRNA, complete cds Length = 2890 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 392 ccgaggacggtggagcttgacgag 415 |||||||||||||||||| ||||| Sbjct: 1189 ccgaggacggtggagcttaacgag 1166
>ref|NM_003833.2| Homo sapiens matrilin 4 (MATN4), transcript variant 1, mRNA Length = 2092 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 gcatcgacatgtacgccgtgggcg 80 |||||| ||||||||||||||||| Sbjct: 1436 gcatcgtcatgtacgccgtgggcg 1459
>ref|NM_030590.1| Homo sapiens matrilin 4 (MATN4), transcript variant 2, mRNA Length = 1969 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 gcatcgacatgtacgccgtgggcg 80 |||||| ||||||||||||||||| Sbjct: 1313 gcatcgtcatgtacgccgtgggcg 1336
>ref|NM_030592.1| Homo sapiens matrilin 4 (MATN4), transcript variant 3, mRNA Length = 1846 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 gcatcgacatgtacgccgtgggcg 80 |||||| ||||||||||||||||| Sbjct: 1190 gcatcgtcatgtacgccgtgggcg 1213
>gb|AE005878.1| Caulobacter crescentus CB15 section 204 of 359 of the complete genome Length = 9963 Score = 40.1 bits (20), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 355 cgacgccgccnagggctgggcca 377 |||||||||| |||||||||||| Sbjct: 3496 cgacgccgccaagggctgggcca 3518
>dbj|AK074597.1| Homo sapiens cDNA FLJ90116 fis, clone HEMBA1006902, highly similar to Homo sapiens mRNA for matrilin-4 Length = 2128 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 gcatcgacatgtacgccgtgggcg 80 |||||| ||||||||||||||||| Sbjct: 1493 gcatcgtcatgtacgccgtgggcg 1516
>dbj|AK074595.1| Homo sapiens cDNA FLJ90114 fis, clone HEMBA1006749, highly similar to Matrilin 4 isoform 2 precursor Length = 2043 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 gcatcgacatgtacgccgtgggcg 80 |||||| ||||||||||||||||| Sbjct: 1408 gcatcgtcatgtacgccgtgggcg 1431
>dbj|AK074593.1| Homo sapiens cDNA FLJ90112 fis, clone HEMBA1006707, highly similar to Homo sapiens mRNA for matrilin-4 Length = 2282 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 gcatcgacatgtacgccgtgggcg 80 |||||| ||||||||||||||||| Sbjct: 1672 gcatcgtcatgtacgccgtgggcg 1695
>dbj|AK074495.1| Homo sapiens cDNA FLJ90014 fis, clone HEMBA1000590, highly similar to Homo sapiens mRNA for matrilin-4 Length = 1480 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 gcatcgacatgtacgccgtgggcg 80 |||||| ||||||||||||||||| Sbjct: 870 gcatcgtcatgtacgccgtgggcg 893
>dbj|AK027323.1| Homo sapiens cDNA FLJ14417 fis, clone HEMBA1005338, highly similar to Homo sapiens mRNA for matrilin-4 Length = 1167 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 gcatcgacatgtacgccgtgggcg 80 |||||| ||||||||||||||||| Sbjct: 528 gcatcgtcatgtacgccgtgggcg 551
>gb|DP000041.1| Gorilla gorilla gorilla target 106 genomic scaffold Length = 355851 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 gcatcgacatgtacgccgtgggcg 80 |||||| ||||||||||||||||| Sbjct: 346806 gcatcgtcatgtacgccgtgggcg 346783
>gb|DP000042.1| Lemur catta target 106 genomic scaffold Length = 452647 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 gcatcgacatgtacgccgtgggcg 80 |||||| ||||||||||||||||| Sbjct: 429211 gcatcgtcatgtacgccgtgggcg 429188
>gb|DP000045.1| Pongo pygmaeus target 106 genomic scaffold Length = 644818 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 gcatcgacatgtacgccgtgggcg 80 |||||| ||||||||||||||||| Sbjct: 462227 gcatcgtcatgtacgccgtgggcg 462204
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cggcctcgccggcaccggca 47 |||||||||||||||||||| Sbjct: 6182170 cggcctcgccggcaccggca 6182189
>gb|AF201416.1| Noterus clavicornis 18S ribosomal RNA gene, partial sequence Length = 1945 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 agcgacgacgaccggcgcga 168 |||||||||||||||||||| Sbjct: 232 agcgacgacgaccggcgcga 213
>gb|AF314058.1|AF314058 Homo sapiens chromosome 20 clone GS1-430E01 map 20q12-q13.12, complete sequence Length = 189656 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 gcatcgacatgtacgccgtgggcg 80 |||||| ||||||||||||||||| Sbjct: 176492 gcatcgtcatgtacgccgtgggcg 176515
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0021G06 Length = 137678 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 aactcgacggcggagggcgt 126 |||||||||||||||||||| Sbjct: 85315 aactcgacggcggagggcgt 85296
>dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0038J17 Length = 180186 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cggcctcgccggcaccggca 47 |||||||||||||||||||| Sbjct: 44368 cggcctcgccggcaccggca 44387
>dbj|AK112018.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-C02, full insert sequence Length = 1367 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 cgcggcctcgccggcaccggcatg 49 ||||||||||||||||||| |||| Sbjct: 735 cgcggcctcgccggcaccgccatg 758
>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0056I06 Length = 138653 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 aactcgacggcggagggcgt 126 |||||||||||||||||||| Sbjct: 11810 aactcgacggcggagggcgt 11791
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgggcggcggccgcaaggcc 94 |||||||||||||||||||| Sbjct: 1761675 tgggcggcggccgcaaggcc 1761694
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 20 ctgtaccgcggcctcgccggcaccggca 47 |||||| ||||| ||||||||||||||| Sbjct: 2398129 ctgtacggcggcttcgccggcaccggca 2398102 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,017,828 Number of Sequences: 3902068 Number of extensions: 2017828 Number of successful extensions: 45008 Number of sequences better than 10.0: 113 Number of HSP's better than 10.0 without gapping: 125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43442 Number of HSP's gapped (non-prelim): 1562 length of query: 415 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 393 effective length of database: 17,147,199,772 effective search space: 6738849510396 effective search space used: 6738849510396 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
