ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart60d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VE5_HPV5B (P26551) Probable protein E5 30 1.3
2GLGB_RHOMR (Q93HU3) 1,4-alpha-glucan branching enzyme (EC 2.4.1.... 28 8.5

>VE5_HPV5B (P26551) Probable protein E5|
          Length = 168

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 204 PAFIKMHVQIKRAGPHHLLHHQVP 133
           P  + + V ++   PHHL+HHQVP
Sbjct: 45  PVPVSVPVALQVPNPHHLVHHQVP 68



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>GLGB_RHOMR (Q93HU3) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 621

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 96  GHALRYRVRHGFREPD 143
           GH  +YR+RHGF + D
Sbjct: 79  GHTYKYRIRHGFYQAD 94


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,234,632
Number of Sequences: 219361
Number of extensions: 334782
Number of successful extensions: 684
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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