Clone Name | bart60d12 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | VE5_HPV5B (P26551) Probable protein E5 | 30 | 1.3 | 2 | GLGB_RHOMR (Q93HU3) 1,4-alpha-glucan branching enzyme (EC 2.4.1.... | 28 | 8.5 |
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>VE5_HPV5B (P26551) Probable protein E5| Length = 168 Score = 30.4 bits (67), Expect = 1.3 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -1 Query: 204 PAFIKMHVQIKRAGPHHLLHHQVP 133 P + + V ++ PHHL+HHQVP Sbjct: 45 PVPVSVPVALQVPNPHHLVHHQVP 68
>GLGB_RHOMR (Q93HU3) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 621 Score = 27.7 bits (60), Expect = 8.5 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +3 Query: 96 GHALRYRVRHGFREPD 143 GH +YR+RHGF + D Sbjct: 79 GHTYKYRIRHGFYQAD 94 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,234,632 Number of Sequences: 219361 Number of extensions: 334782 Number of successful extensions: 684 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 678 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 684 length of database: 80,573,946 effective HSP length: 46 effective length of database: 70,483,340 effective search space used: 1691600160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)