Clone Information

BLAST Search Result

Clone Name	bart60d08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RBP24_HUMAN (Q4ZG46) Ran-binding protein 2-like 4 (RanBP2L4)	35	0.083
2	GCC2_HUMAN (Q8IWJ2) GRIP and coiled-coil domain-containing prote...	35	0.083
3	SAS4_CAEEL (P34402) Spindle assembly abnormal protein 4	33	0.31
4	ARCB_HAEIN (P44578) Aerobic respiration control sensor protein a...	33	0.31
5	SLAP2_THET8 (P35830) S-layer protein precursor (P100 protein) (S...	33	0.31
6	MYH11_CHICK (P10587) Myosin-11 (Myosin heavy chain, gizzard smoo...	33	0.41
7	GCC2_MOUSE (Q8CHG3) GRIP and coiled-coil domain-containing prote...	32	0.54
8	Y306_STRA5 (P67281) UPF0144 protein SAG0306	31	1.2
9	Y295_STRA3 (P67280) UPF0144 protein gbs0295	31	1.2
10	ATG11_DEBHA (Q6BRA6) Autophagy-related protein 11	31	1.2
11	MYS_AEQIR (P24733) Myosin heavy chain, striated muscle	31	1.6
12	OMPA_THEMA (Q01969) Outer membrane protein alpha precursor	31	1.6
13	SYA_STAHJ (Q4L6W5) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-...	30	2.7
14	YEF3_YEAST (P32618) Hypothetical 106.1 kDa protein in GLY1-GDA1 ...	30	3.5
15	MYH9_HUMAN (P35579) Myosin-9 (Myosin heavy chain, nonmuscle IIa)...	30	3.5
16	MYS3_HYDAT (P39922) Myosin heavy chain, clone 203 (Fragment)	29	4.5
17	GRPE_STAS1 (Q49Y23) Protein grpE (HSP-70 cofactor)	29	4.5
18	MYH9_CHICK (P14105) Myosin-9 (Myosin heavy chain, nonmuscle IIa)...	29	4.5
19	PFDA_PYRHO (O58263) Prefoldin alpha subunit (GimC alpha subunit)	29	5.9
20	ATG23_DEBHA (Q6BHF8) Autophagy-related protein 23	29	5.9
21	Y4393_ANASP (Q05070) Hypothetical protein alr4393 precursor	29	5.9
22	DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-re...	29	5.9
23	URK_SHIFL (P0A8F7) Uridine kinase (EC 2.7.1.48) (Uridine monopho...	29	5.9
24	URK_ECOLI (P0A8F4) Uridine kinase (EC 2.7.1.48) (Uridine monopho...	29	5.9
25	URK_ECOL6 (P0A8F5) Uridine kinase (EC 2.7.1.48) (Uridine monopho...	29	5.9
26	URK_ECO57 (P0A8F6) Uridine kinase (EC 2.7.1.48) (Uridine monopho...	29	5.9
27	LY_BPSF6 (P21270) Lysozyme (EC 3.2.1.17)	29	5.9
28	VSI1_REOVD (P03528) Sigma-1 protein precursor (Hemagglutinin) (C...	29	5.9
29	MYOJ_DICDI (P54697) Myosin IJ heavy chain	29	5.9
30	LON_BRECH (P36772) ATP-dependent protease La (EC 3.4.21.53)	28	7.7
31	CI039_HUMAN (Q9NXG0) Protein C9orf39	28	7.7
32	ALM1_SCHPO (Q9UTK5) Abnormal long morphology protein 1 (Sp8)	28	7.7
33	TPM4_PIG (P67937) Tropomyosin alpha-4 chain (Tropomyosin-4)	28	7.7
34	TPM4_HUMAN (P67936) Tropomyosin alpha-4 chain (Tropomyosin-4) (T...	28	7.7
35	TPM4_HORSE (P02561) Tropomyosin alpha-4 chain (Tropomyosin-4) (P...	28	7.7
36	TRAF1_HUMAN (Q13077) TNF receptor-associated factor 1 (Epstein-B...	28	7.7
37	USP45_LACLC (P22865) Secreted 45 kDa protein precursor	28	7.7
38	MYSN_DROME (Q99323) Myosin heavy chain, non-muscle (Zipper prote...	28	7.7
39	NUF1_YEAST (P32380) Protein NUF1 (Spindle poly body spacer prote...	28	7.7

>RBP24_HUMAN (Q4ZG46) Ran-binding protein 2-like 4 (RanBP2L4)|
          Length = 1583

 Score = 35.0 bits (79), Expect = 0.083
 Identities = 20/50 (40%), Positives = 32/50 (64%)
 Frame = +3

Query: 276  KISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITSLQKT 425
            +I+  E  + + +Q L +K++ I  LE++I  + QK  TLQ EITSLQ +
Sbjct: 1060 EIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSS 1109

to top

>GCC2_HUMAN (Q8IWJ2) GRIP and coiled-coil domain-containing protein 2 (Golgi|
            coiled coil protein GCC185) (CTCL tumor antigen se1-1)
            (CLL-associated antigen KW-11) (NY-REN-53 antigen)
          Length = 1583

 Score = 35.0 bits (79), Expect = 0.083
 Identities = 20/50 (40%), Positives = 32/50 (64%)
 Frame = +3

Query: 276  KISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITSLQKT 425
            +I+  E  + + +Q L +K++ I  LE++I  + QK  TLQ EITSLQ +
Sbjct: 1060 EIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSS 1109

to top

>SAS4_CAEEL (P34402) Spindle assembly abnormal protein 4|
          Length = 808

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = +3

Query: 267 LREKISALES-------DIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITSLQ 419
           LR+K+ A E+       DI  R + LK KD+ I KL+KD       + TL+  +  L+
Sbjct: 433 LRDKLRASETKNAQYRQDIRVRDEKLKKKDEEIEKLQKDGNRLKSTLQTLEKRVKQLR 490

to top

>ARCB_HAEIN (P44578) Aerobic respiration control sensor protein arcB homolog|
           (EC 2.7.13.3)
          Length = 325

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 267 LREKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSE 404
           L   ++ LE+++A+R    K     + KLEK+  DKS  +AT+  E
Sbjct: 87  LSSSVNRLENEVAERIAAQKKLSQALEKLEKNSRDKSTLLATISHE 132

to top

>SLAP2_THET8 (P35830) S-layer protein precursor (P100 protein) (Surface layer|
           protein)
          Length = 917

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +3

Query: 270 REKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQ 398
           +E ++A++   A    DL    + ++KLE  +GD S K+ATLQ
Sbjct: 219 KEDVAAVQEFAAALRSDLVGLSEKVSKLEGTVGDLSGKVATLQ 261

to top

>MYH11_CHICK (P10587) Myosin-11 (Myosin heavy chain, gizzard smooth muscle)|
          Length = 1978

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +3

Query: 273  EKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEI 407
            +KI  LES I+D  +DL+S+     K EK   D S+++  L++E+
Sbjct: 1116 KKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160

to top

>GCC2_MOUSE (Q8CHG3) GRIP and coiled-coil domain-containing protein 2 (Golgi|
            coiled coil protein GCC185)
          Length = 1679

 Score = 32.3 bits (72), Expect = 0.54
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +3

Query: 276  KISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITSLQKT 425
            +I+  E  + + +Q L +K+  I  LE+++  + +K  TLQ EITSLQ +
Sbjct: 1152 EIADYERLMKELNQKLTNKNSTIEDLEQEMKIQKEKQETLQEEITSLQSS 1201

to top

>Y306_STRA5 (P67281) UPF0144 protein SAG0306|
          Length = 535

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
 Frame = +3

Query: 270 REKISALESDIADRSQDLKSKDDGIAKLEK-------DIGDKSQKIATLQSEITSLQ 419
           R+++  +E+ + DR+  L  KD+ ++  EK        + DKS+ I   + EI +L+
Sbjct: 96  RQELKQMEARLTDRASSLDRKDENLSNKEKMLDSKEQSLTDKSRHINEREQEIATLE 152

to top

>Y295_STRA3 (P67280) UPF0144 protein gbs0295|
          Length = 535

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
 Frame = +3

Query: 270 REKISALESDIADRSQDLKSKDDGIAKLEK-------DIGDKSQKIATLQSEITSLQ 419
           R+++  +E+ + DR+  L  KD+ ++  EK        + DKS+ I   + EI +L+
Sbjct: 96  RQELKQMEARLTDRASSLDRKDENLSNKEKMLDSKEQSLTDKSRHINEREQEIATLE 152

to top

>ATG11_DEBHA (Q6BRA6) Autophagy-related protein 11|
          Length = 1282

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/50 (30%), Positives = 30/50 (60%)
 Frame = +3

Query: 267 LREKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITSL 416
           L++K+S  +++I D  +D+    D      +++   ++KIATLQS+I  +
Sbjct: 811 LKDKLSLRDAEILDLRKDITRLHDVNEGFTEEVTKLNEKIATLQSDINDV 860

to top

>MYS_AEQIR (P24733) Myosin heavy chain, striated muscle|
          Length = 1938

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +3

Query: 288  LESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEIT 410
            +E+D A+  +D+   ++ + K E+D   K  +I+TLQ EI+
Sbjct: 940  MEADNANLKKDIGDLENTLQKAEQDKAHKDNQISTLQGEIS 980

to top

>OMPA_THEMA (Q01969) Outer membrane protein alpha precursor|
          Length = 400

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = +3

Query: 264 QLREKISALESDIADRSQDLKSKDDGIAKL-EKDIGDKSQKIATLQSEITS 413
           ++ EK++ALE D+ ++  DL    +GI  L EKDI +   KI+++  E+ +
Sbjct: 185 EVNEKLAALEKDLGNKIADL----EGIVNLHEKDIINIYNKISSVNEELNN 231

to top

>SYA_STAHJ (Q4L6W5) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 876

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 297 DIADRSQDLKSKD-DGIAKLEKDIGDKSQKIATLQSEITSLQKTGSV 434
           +I     D KSK  D I  L  D+G+K   IAT+  E T   K G +
Sbjct: 787 EIRQTMDDFKSKQQDAIIILASDLGEKVSLIATVPKEQTDKIKAGDI 833

to top

>YEF3_YEAST (P32618) Hypothetical 106.1 kDa protein in GLY1-GDA1 intergenic|
           region
          Length = 956

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 270 REKISALESDIADRSQD---LKSKDDGIAKLEKDIGDKSQKIATLQSEITSLQ 419
           +EKIS + +D+   SQ+   L SKD    K  K + + +  +A +  EI SLQ
Sbjct: 303 KEKISKMRNDMQKWSQEDTELLSKDTIKEKYFKLLNESNASVANINKEIESLQ 355

to top

>MYH9_HUMAN (P35579) Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle|
            myosin heavy chain IIa) (NMMHC II-a) (NMMHC-IIA)
            (Cellular myosin heavy chain, type A) (Nonmuscle myosin
            heavy chain-A) (NMMHC-A)
          Length = 1959

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +3

Query: 273  EKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEI 407
            +KI  LES I++  +DL+S+     K EK   D  +++  L++E+
Sbjct: 1103 KKIRELESQISELQEDLESERASRNKAEKQKRDLGEELEALKTEL 1147

to top

>MYS3_HYDAT (P39922) Myosin heavy chain, clone 203 (Fragment)|
          Length = 539

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = +3

Query: 267 LREKISALESDIADRSQDLKSKDDGIAKLEK-------DIGDKSQKIATLQSEITSLQ 419
           L +  + LES I +  QDLK + D   KLEK       D+ D   K++  ++ +   Q
Sbjct: 223 LNKTKNKLESSIREIEQDLKKEKDSKMKLEKEKKKVESDLKDNRDKLSETETRLKETQ 280

to top

>GRPE_STAS1 (Q49Y23) Protein grpE (HSP-70 cofactor)|
          Length = 203

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +3

Query: 291 ESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITSLQK 422
           E D  + ++D+  KD+ I +L+KD+ +  +K   L +E  + ++
Sbjct: 41  EDDSQEIAEDVDPKDEEIQQLKKDVQENEEKYLRLYAEFENYKR 84

to top

>MYH9_CHICK (P14105) Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle|
            myosin heavy chain IIa) (NMMHC II-a) (NMMHC-IIA)
            (Cellular myosin heavy chain, type A) (Nonmuscle myosin
            heavy chain-A) (NMMHC-A)
          Length = 1959

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 273  EKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEI 407
            +KI  LES I +  +DL+S+     K EK   D  +++  L++E+
Sbjct: 1104 KKIRELESQITELQEDLESERASRNKAEKQKRDLGEELEALKTEL 1148

to top

>PFDA_PYRHO (O58263) Prefoldin alpha subunit (GimC alpha subunit)|
          Length = 148

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 273 EKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSE 404
           E IS LE  + +  + +K     +A+LEK IG+ ++K   +Q +
Sbjct: 95  EAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 138

to top

>ATG23_DEBHA (Q6BHF8) Autophagy-related protein 23|
          Length = 905

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 267 LREKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATL 395
           LRE+I  LE  + D+S   K  +  I  L  +I +K  +I++L
Sbjct: 515 LREQIKRLEKSVEDKSISQKEYESQIKILNDEIKEKDTEISSL 557

to top

>Y4393_ANASP (Q05070) Hypothetical protein alr4393 precursor|
          Length = 496

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +3

Query: 264 QLREKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITSLQK 422
           Q  +KIS L+  I +R+ ++  +++ IAK E  + +   +   L+ E+  L+K
Sbjct: 231 QRDQKISQLDKIIQNRNLEIAQREEVIAKRESRLKELETQQDYLEQEVARLEK 283

to top

>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1)
          Length = 1248

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = +3

Query: 264 QLREKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITSLQKTGSVA 437
           +L+ ++  +ESD   + QDL+ + D +   ++ I  + Q    L++E++ L  TG VA
Sbjct: 488 ELQVEMKKMESDFEQKLQDLQGEKDALHSEKQQIATEKQ---DLEAEVSQL--TGEVA 540

to top

>URK_SHIFL (P0A8F7) Uridine kinase (EC 2.7.1.48) (Uridine monophosphokinase)|
           (Cytidine monophosphokinase)
          Length = 213

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 347 EAGEGHWGQVTEDCYSAERDHISPE 421
           + G+ H G + EDCY  ++ H+S E
Sbjct: 35  QVGDEHIGVIPEDCYYKDQSHLSME 59

to top

>URK_ECOLI (P0A8F4) Uridine kinase (EC 2.7.1.48) (Uridine monophosphokinase)|
           (Cytidine monophosphokinase)
          Length = 213

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 347 EAGEGHWGQVTEDCYSAERDHISPE 421
           + G+ H G + EDCY  ++ H+S E
Sbjct: 35  QVGDEHIGVIPEDCYYKDQSHLSME 59

to top

>URK_ECOL6 (P0A8F5) Uridine kinase (EC 2.7.1.48) (Uridine monophosphokinase)|
           (Cytidine monophosphokinase)
          Length = 213

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 347 EAGEGHWGQVTEDCYSAERDHISPE 421
           + G+ H G + EDCY  ++ H+S E
Sbjct: 35  QVGDEHIGVIPEDCYYKDQSHLSME 59

to top

>URK_ECO57 (P0A8F6) Uridine kinase (EC 2.7.1.48) (Uridine monophosphokinase)|
           (Cytidine monophosphokinase)
          Length = 213

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 347 EAGEGHWGQVTEDCYSAERDHISPE 421
           + G+ H G + EDCY  ++ H+S E
Sbjct: 35  QVGDEHIGVIPEDCYYKDQSHLSME 59

to top

>LY_BPSF6 (P21270) Lysozyme (EC 3.2.1.17)|
          Length = 316

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +3

Query: 264 QLREKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITSLQ 419
           QL  ++  LE+ +AD   D  +    +   E++IG  + +++TL   +TS+Q
Sbjct: 104 QLGARVGQLETGLADVRVDHDNLVARVDTAERNIGSLTTELSTLTLRVTSIQ 155

to top

>VSI1_REOVD (P03528) Sigma-1 protein precursor (Hemagglutinin) (Cell attachment|
           protein) (Minor outer capsid protein)
          Length = 455

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +3

Query: 264 QLREKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITSLQ 419
           QL  ++  LE+ +AD   D  +    +   E++IG  + +++TL   +TS+Q
Sbjct: 104 QLGARVGQLETGLADVRVDHDNLVARVDTAERNIGSLTTELSTLTLRVTSIQ 155

to top

>MYOJ_DICDI (P54697) Myosin IJ heavy chain|
          Length = 2245

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +3

Query: 264  QLREKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITSLQK 422
            QL E +S LE    +++Q L        KLEKD+ D+   I  LQS+    ++
Sbjct: 1049 QLSECLSKLE----EQTQQLDHSSKLNKKLEKDLSDQHDSIEKLQSQFNETEQ 1097

to top

>LON_BRECH (P36772) ATP-dependent protease La (EC 3.4.21.53)|
          Length = 779

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +3

Query: 267 LREKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKI-ATLQSEITSLQKTGSVAA 440
           LRE++ A++ ++ D+       D+  A+LEK   D  ++I A ++ E+  L+K  S +A
Sbjct: 229 LREQMKAIQKELGDKDGRQGEVDELRAQLEK--SDAPERIKAKIEKELERLEKMPSTSA 285

to top

>CI039_HUMAN (Q9NXG0) Protein C9orf39|
          Length = 1084

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +3

Query: 267 LREKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITSLQK 422
           L+  +   + D   R ++L+    G   +EK+  +   KI+ L++E+TSL++
Sbjct: 404 LKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRR 455

to top

>ALM1_SCHPO (Q9UTK5) Abnormal long morphology protein 1 (Sp8)|
          Length = 1727

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +3

Query: 264 QLREKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITS 413
           +LREK+ ALE D+  + Q ++ +     K  ++    S++I  L+SE+ S
Sbjct: 551 ELREKVRALECDVEIQKQTVQYQISNAVK--ENSNTLSEQIKNLESELNS 598

to top

>TPM4_PIG (P67937) Tropomyosin alpha-4 chain (Tropomyosin-4)|
          Length = 247

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 273 EKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITSLQKT 425
           E+I  L   + +     +  +  +AKLEK I D  +K+A  + E   L +T
Sbjct: 186 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQT 236

to top

>TPM4_HUMAN (P67936) Tropomyosin alpha-4 chain (Tropomyosin-4) (TM30p1)|
          Length = 247

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 273 EKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITSLQKT 425
           E+I  L   + +     +  +  +AKLEK I D  +K+A  + E   L +T
Sbjct: 186 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQT 236

to top

>TPM4_HORSE (P02561) Tropomyosin alpha-4 chain (Tropomyosin-4) (Platelet beta|
           tropomyosin)
          Length = 247

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 273 EKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITSLQKT 425
           E+I  L   + +     +  +  +AKLEK I D  +K+A  + E   L +T
Sbjct: 186 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQT 236

to top

>TRAF1_HUMAN (Q13077) TNF receptor-associated factor 1 (Epstein-Barr|
           virus-induced protein 6)
          Length = 416

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 270 REKISALESDIADRSQDLKSKDDGIAKLEKDI 365
           RE+I +LE  + +  Q L  KD  + KLE+ +
Sbjct: 226 RERILSLEQRVVELQQTLAQKDQALGKLEQSL 257

to top

>USP45_LACLC (P22865) Secreted 45 kDa protein precursor|
          Length = 461

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 264 QLREKISALESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITSLQKT 425
           Q + ++ +L+S +    Q   S    IAK+E ++   + +IATL   I    KT
Sbjct: 49  QAQAQVDSLQSKVDSLQQKQTSTKAQIAKIESELKALNAQIATLNESIKERTKT 102

to top

>MYSN_DROME (Q99323) Myosin heavy chain, non-muscle (Zipper protein) (Myosin II)|
            (Non-muscle MHC)
          Length = 2057

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +3

Query: 288  LESDIADRSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEI 407
            LES +A+  +DL+++    AK EK   D S+++  L++E+
Sbjct: 1200 LESQLAEIQEDLEAEKAARAKAEKVRRDLSEELEALKNEL 1239

to top

>NUF1_YEAST (P32380) Protein NUF1 (Spindle poly body spacer protein SPC110)|
          Length = 944

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 8/58 (13%)
 Frame = +3

Query: 273 EKISALESDIAD--------RSQDLKSKDDGIAKLEKDIGDKSQKIATLQSEITSLQK 422
           +KI  L+  IA+        RS+D+K KD+ I+ L +++  +  +I++L+S I   +K
Sbjct: 572 DKIEELKIRIAENSAKVSEKRSKDIKQKDEQISDLTQNLKLQEDEISSLKSIIDRYKK 629


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,836,626
Number of Sequences: 219361
Number of extensions: 477648
Number of successful extensions: 2725
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 2597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2721
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result